Wall clock time and date at job start Mon Mar 30 2020 06:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47168 * 2 1 4 4 C 1.53003 * 109.47173 * 240.00036 * 2 1 3 5 5 C 1.50696 * 109.47093 * 120.00143 * 2 1 3 6 6 N 1.31577 * 119.95411 * 359.83688 * 5 2 1 7 7 C 1.33423 * 121.10428 * 179.97438 * 6 5 2 8 8 C 1.41579 * 119.57507 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00314 * 359.97438 * 8 7 6 10 10 C 1.40053 * 119.99842 * 179.97438 * 8 7 6 11 11 N 1.30690 * 120.00396 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99716 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47107 * 90.00188 * 12 10 8 14 14 H 1.48497 * 109.47153 * 210.00202 * 12 10 8 15 15 H 1.48497 * 109.47319 * 330.00683 * 12 10 8 16 16 N 1.33288 * 120.85376 * 0.02562 * 7 6 5 17 17 C 1.33007 * 120.80724 * 359.97438 * 16 7 6 18 18 C 1.39180 * 119.95497 * 0.02562 * 17 16 7 19 19 C 1.49966 * 115.45695 * 180.02562 * 18 17 16 20 20 C 1.52607 * 112.34763 * 359.97438 * 19 18 17 21 21 S 1.76578 * 129.99731 * 180.02562 * 17 16 7 22 22 H 1.08999 * 109.47190 * 300.00125 * 1 2 3 23 23 H 1.09007 * 109.47006 * 59.99518 * 1 2 3 24 24 H 1.09002 * 109.47072 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47129 * 188.44595 * 3 2 1 26 26 H 1.08992 * 109.47347 * 308.45309 * 3 2 1 27 27 H 1.09002 * 109.46945 * 68.45429 * 3 2 1 28 28 H 1.08994 * 109.47175 * 291.26754 * 4 2 1 29 29 H 1.09001 * 109.47005 * 51.26589 * 4 2 1 30 30 H 1.08998 * 109.47005 * 171.26462 * 4 2 1 31 31 H 0.97001 * 120.00276 * 179.97438 * 11 10 8 32 32 H 1.09000 * 108.91622 * 239.24504 * 19 18 17 33 33 H 1.09001 * 108.91697 * 120.75052 * 19 18 17 34 34 H 1.09004 * 110.30806 * 241.08769 * 20 19 18 35 35 H 1.09002 * 110.39860 * 118.96212 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 1.1764 -1.2073 2.0975 7 6 1.5958 -1.8410 3.1942 8 6 0.6466 -2.3627 4.1059 9 1 -0.4094 -2.2461 3.9118 10 6 1.0770 -3.0299 5.2596 11 7 2.3548 -3.1706 5.4949 12 14 -0.1755 -3.7176 6.4629 13 1 -0.5133 -5.1128 6.0825 14 1 0.3951 -3.7027 7.8338 15 1 -1.4041 -2.8842 6.4289 16 7 2.8969 -1.9885 3.4431 17 6 3.8098 -1.5077 2.6036 18 6 3.4097 -0.8408 1.4494 19 6 4.5214 -0.3415 0.5753 20 6 5.8989 -0.6730 1.1423 21 16 5.5726 -1.5637 2.6902 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1195 1.4462 -0.1509 26 1 1.5586 1.9981 -0.8047 27 1 1.8052 1.9108 0.9559 28 1 1.8097 -1.7840 -1.1747 29 1 1.5548 -0.3054 -2.1324 30 1 3.1187 -0.5881 -1.3307 31 1 2.6529 -3.6324 6.2942 32 1 4.4324 0.7401 0.4738 33 1 4.4264 -0.7954 -0.4111 34 1 6.4559 0.2423 1.3425 35 1 6.4519 -1.3079 0.4500 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259867951.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:30 Heat of formation + Delta-G solvation = 13.213899 kcal Electronic energy + Delta-G solvation = -18204.625349 eV Core-core repulsion = 15520.444584 eV Total energy + Delta-G solvation = -2684.180765 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.34219 -37.95003 -36.10938 -35.15978 -32.91130 -31.00324 -28.59532 -28.12119 -27.68412 -25.06619 -24.77727 -22.53509 -20.99201 -19.08945 -18.60498 -17.12275 -16.79520 -16.34504 -15.82062 -15.39122 -15.36141 -14.88780 -14.61390 -14.34334 -13.89467 -13.57361 -13.42126 -13.35259 -12.93824 -12.81798 -12.79608 -12.68831 -12.10152 -11.95667 -11.92153 -11.82238 -11.64030 -11.52254 -11.14832 -11.12159 -11.02854 -9.85296 -9.25955 -8.51591 -8.47479 -6.78515 0.54227 0.65633 0.92256 1.34843 1.45082 1.48890 1.52058 2.15242 2.65151 3.54730 3.71213 3.84128 3.96093 4.08773 4.20753 4.21095 4.34451 4.40231 4.65632 4.69065 4.76865 4.82025 4.86676 4.91223 5.00430 5.04740 5.09623 5.16392 5.19750 5.28433 5.33843 5.51518 5.59795 5.76111 6.05800 6.46085 6.58252 7.08488 8.13944 8.31586 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.018648 B = 0.008182 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.114336 B = 3421.304031 C = 4720.746674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.020 4.020 3 C -0.132 4.132 4 C -0.132 4.132 5 C 0.214 3.786 6 N -0.604 5.604 7 C 0.375 3.625 8 C -0.434 4.434 9 H 0.093 0.907 10 C 0.021 3.979 11 N -0.750 5.750 12 Si 1.001 2.999 13 H -0.259 1.259 14 H -0.263 1.263 15 H -0.253 1.253 16 N -0.534 5.534 17 C 0.154 3.846 18 C -0.343 4.343 19 C -0.054 4.054 20 C -0.081 4.081 21 S -0.152 6.152 22 H 0.035 0.965 23 H 0.080 0.920 24 H 0.035 0.965 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.030 0.970 28 H 0.030 0.970 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.283 0.717 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.173 6.097 -10.592 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.021 4.021 3 C -0.190 4.190 4 C -0.190 4.190 5 C 0.059 3.941 6 N -0.324 5.324 7 C 0.135 3.865 8 C -0.470 4.470 9 H 0.111 0.889 10 C -0.202 4.202 11 N -0.372 5.372 12 Si 0.820 3.180 13 H -0.183 1.183 14 H -0.187 1.187 15 H -0.177 1.177 16 N -0.255 5.255 17 C -0.108 4.108 18 C -0.359 4.359 19 C -0.092 4.092 20 C -0.229 4.229 21 S 0.084 5.916 22 H 0.054 0.946 23 H 0.099 0.901 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.143 0.857 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.517 5.112 -8.876 10.830 hybrid contribution -0.796 0.086 -0.164 0.818 sum 2.721 5.198 -9.039 10.777 Atomic orbital electron populations 1.21545 0.93614 1.00963 1.01048 1.19629 0.96406 0.95654 0.90412 1.21914 1.02541 0.92889 1.01632 1.21919 1.02567 0.98801 0.95703 1.21662 0.87976 0.90434 0.94045 1.68334 1.38983 1.18660 1.06375 1.20301 0.87727 0.89172 0.89306 1.19655 0.93735 1.30402 1.03193 0.88886 1.27134 0.98254 0.94844 0.99976 1.70233 1.17211 1.26390 1.23379 0.84935 0.77793 0.79127 0.76177 1.18310 1.18736 1.17660 1.68896 1.01473 1.24888 1.30257 1.23689 0.98891 0.94843 0.93350 1.21562 0.96866 1.15971 1.01532 1.20171 0.88121 1.02497 0.98375 1.24005 1.00396 1.03920 0.94603 1.85291 0.99341 1.73180 1.33760 0.94610 0.90112 0.94611 0.90442 0.89223 0.95092 0.95088 0.89235 0.90407 0.90615 0.88563 0.88544 0.85677 0.85663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.74 7.67 71.98 0.55 -3.19 16 2 C -0.02 -0.64 0.75 -52.93 -0.04 -0.68 16 3 C -0.13 -3.46 8.15 71.98 0.59 -2.87 16 4 C -0.13 -3.46 8.14 71.98 0.59 -2.87 16 5 C 0.21 9.67 5.59 43.04 0.24 9.91 16 6 N -0.60 -32.81 9.00 -181.58 -1.64 -34.45 16 7 C 0.38 22.63 7.38 135.21 1.00 23.63 16 8 C -0.43 -25.29 9.39 23.53 0.22 -25.07 16 9 H 0.09 5.18 7.85 -2.91 -0.02 5.16 16 10 C 0.02 1.12 5.50 85.30 0.47 1.59 16 11 N -0.75 -42.60 11.45 21.84 0.25 -42.35 16 12 Si 1.00 39.64 29.56 68.60 2.03 41.66 16 13 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 14 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 15 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 16 N -0.53 -32.27 7.94 -190.41 -1.51 -33.78 16 17 C 0.15 7.96 7.61 84.74 0.64 8.61 16 18 C -0.34 -14.90 5.64 -19.42 -0.11 -15.01 16 19 C -0.05 -1.57 4.67 29.49 0.14 -1.44 16 20 C -0.08 -2.15 7.28 71.85 0.52 -1.63 16 21 S -0.15 -6.23 23.16 -56.49 -1.31 -7.54 16 22 H 0.03 1.31 8.06 -2.39 -0.02 1.29 16 23 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 24 H 0.03 1.30 8.07 -2.39 -0.02 1.29 16 25 H 0.08 1.76 4.93 -2.39 -0.01 1.75 16 26 H 0.09 1.75 8.13 -2.39 -0.02 1.73 16 27 H 0.03 0.94 8.12 -2.39 -0.02 0.92 16 28 H 0.03 0.94 8.12 -2.39 -0.02 0.92 16 29 H 0.09 1.74 8.13 -2.39 -0.02 1.72 16 30 H 0.08 1.77 4.92 -2.39 -0.01 1.75 16 31 H 0.28 14.46 8.29 -92.71 -0.77 13.69 16 32 H 0.10 2.40 5.71 -2.39 -0.01 2.38 16 33 H 0.10 2.40 5.71 -2.39 -0.01 2.39 16 34 H 0.12 2.60 8.14 -2.38 -0.02 2.58 16 35 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -74.25 290.67 3.74 -70.52 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.10 Total: 14.96 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 4.81 Total: -9.02 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -2.90 Total: -110.57 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 16 Polarization: -6.23 SS G_CDS: -1.31 Total: -7.54 kcal Total: -74.25 3.74 -70.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867951.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.730 kcal (2) G-P(sol) polarization free energy of solvation -74.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds