Wall clock time and date at job start Mon Mar 30 2020 06:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46833 * 2 1 4 4 C 1.50696 * 109.47177 * 119.99901 * 2 1 3 5 5 N 1.32097 * 120.06209 * 300.17242 * 4 2 1 6 6 C 1.31765 * 121.23952 * 180.26140 * 5 4 2 7 7 C 1.50700 * 119.40653 * 179.80161 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.72167 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99985 * 180.27663 * 10 8 7 12 12 Si 1.86800 * 119.99777 * 0.28166 * 10 8 7 13 13 H 1.48498 * 109.47109 * 89.99834 * 12 10 8 14 14 H 1.48507 * 109.46754 * 209.99574 * 12 10 8 15 15 H 1.48498 * 109.47278 * 329.99405 * 12 10 8 16 16 N 1.31612 * 121.18450 * 359.51894 * 6 5 4 17 17 C 1.33416 * 120.90720 * 0.25672 * 16 6 5 18 18 C 1.38668 * 119.81925 * 0.02562 * 17 16 6 19 19 C 1.49933 * 115.58772 * 179.97438 * 18 17 16 20 20 C 1.52645 * 112.29006 * 0.02562 * 19 18 17 21 21 S 1.76553 * 130.09165 * 179.97438 * 17 16 6 22 22 H 1.08999 * 109.47084 * 299.99825 * 1 2 3 23 23 H 1.08996 * 109.47223 * 60.00141 * 1 2 3 24 24 H 1.09003 * 109.46746 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47084 * 240.00174 * 2 1 3 26 26 H 1.09004 * 109.46734 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47101 * 299.99933 * 3 2 1 28 28 H 1.08999 * 109.47143 * 60.00211 * 3 2 1 29 29 H 1.09004 * 109.47210 * 149.72460 * 7 6 5 30 30 H 1.08994 * 109.47551 * 29.72113 * 7 6 5 31 31 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 32 32 H 1.08994 * 108.93139 * 239.25826 * 19 18 17 33 33 H 1.09006 * 108.92316 * 120.74210 * 19 18 17 34 34 H 1.09001 * 110.32754 * 241.10474 * 20 19 18 35 35 H 1.09004 * 110.41196 * 118.93315 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7112 -0.2621 2.4308 6 6 2.1417 -0.8621 3.5221 7 6 1.7536 -0.3127 4.8706 8 6 2.7849 0.6900 5.3202 9 1 3.6360 0.9080 4.6920 10 6 2.6387 1.3338 6.5307 11 7 3.5359 2.2129 6.9205 12 14 1.1664 0.9572 7.6170 13 1 1.5013 -0.1615 8.5342 14 1 0.8171 2.1618 8.4122 15 1 0.0105 0.5722 6.7680 16 7 2.8999 -1.9358 3.4555 17 6 3.2609 -2.4478 2.2775 18 6 2.8350 -1.8446 1.1038 19 6 3.2964 -2.4979 -0.1644 20 6 4.1632 -3.7264 0.0993 21 16 4.2572 -3.8577 1.9079 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6998 -1.1272 5.5930 30 1 0.7810 0.1739 4.7986 31 1 3.4332 2.6655 7.7723 32 1 3.8719 -1.7767 -0.7446 33 1 2.4241 -2.7990 -0.7446 34 1 5.1587 -3.5848 -0.3215 35 1 3.6979 -4.6175 -0.3220 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259976702.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:04 Heat of formation + Delta-G solvation = 27.805965 kcal Electronic energy + Delta-G solvation = -17637.602316 eV Core-core repulsion = 14954.054310 eV Total energy + Delta-G solvation = -2683.548005 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.82641 -36.20385 -35.39150 -33.08131 -32.11251 -30.82907 -28.36407 -27.07682 -25.16911 -24.41454 -22.67966 -21.28277 -20.15906 -18.11878 -16.89582 -16.36144 -15.74279 -15.23059 -14.82445 -14.40402 -14.05740 -13.96047 -13.51415 -13.09058 -13.02701 -12.81085 -12.15666 -12.07085 -12.02746 -11.87061 -11.40457 -11.25632 -11.03673 -10.93519 -10.61752 -10.52439 -10.47292 -10.11071 -10.02575 -9.48594 -8.86003 -8.62277 -8.58741 -7.62223 -6.08687 -4.08638 1.21142 1.31947 1.42685 2.13223 3.31092 3.37606 3.40003 4.10685 4.25498 4.35298 4.40727 4.57752 4.63668 4.70044 4.94234 5.09841 5.18714 5.24025 5.26773 5.38273 5.49590 5.55959 5.64003 5.70224 5.86670 5.93291 5.97135 6.07630 6.31401 6.44702 6.72020 6.97920 7.02593 7.44851 7.58072 8.42331 8.70952 8.91246 9.48256 11.04194 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.018656 B = 0.006541 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.480226 B = 4279.579764 C = 5234.604675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 C -0.141 4.141 4 C 0.211 3.789 5 N -0.510 5.510 6 C 0.391 3.609 7 C 0.048 3.952 8 C -0.508 4.508 9 H 0.071 0.929 10 C 0.074 3.926 11 N -0.896 5.896 12 Si 0.878 3.122 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.263 1.263 16 N -0.499 5.499 17 C 0.171 3.829 18 C -0.244 4.244 19 C -0.068 4.068 20 C -0.104 4.104 21 S -0.069 6.069 22 H 0.071 0.929 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.266 0.734 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.141 -9.085 -17.730 20.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.063 4.063 3 C -0.199 4.199 4 C 0.060 3.940 5 N -0.224 5.224 6 C 0.124 3.876 7 C 0.009 3.991 8 C -0.547 4.547 9 H 0.089 0.911 10 C -0.128 4.128 11 N -0.534 5.534 12 Si 0.705 3.295 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.188 1.188 16 N -0.216 5.216 17 C -0.086 4.086 18 C -0.256 4.256 19 C -0.107 4.107 20 C -0.253 4.253 21 S 0.169 5.831 22 H 0.090 0.910 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.706 -9.519 -15.950 18.771 hybrid contribution -0.877 0.461 -0.786 1.265 sum -3.583 -9.059 -16.736 19.365 Atomic orbital electron populations 1.21769 0.93340 1.01794 1.02847 1.20151 0.96910 0.96660 0.92626 1.21781 1.00962 0.94273 1.02901 1.21396 0.89381 0.89142 0.94064 1.67976 1.25034 1.31620 0.97756 1.23870 0.84409 0.83670 0.95647 1.18690 0.98737 0.96776 0.84905 1.20600 1.07933 1.21435 1.04720 0.91117 1.24878 0.96280 0.94421 0.97208 1.69879 1.34981 1.26729 1.21832 0.86794 0.83540 0.78196 0.80972 1.19899 1.21012 1.18769 1.68029 1.14582 1.14061 1.24894 1.23300 0.96365 0.97349 0.91625 1.21655 1.06814 1.01643 0.95471 1.20026 0.99850 0.95452 0.95331 1.23877 1.04485 1.01681 0.95251 1.85789 1.61553 1.31150 1.04605 0.91027 0.92128 0.93092 0.89982 0.92871 0.92186 0.90776 0.93762 0.93141 0.92418 0.89208 0.89308 0.87474 0.87505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.10 37.16 0.34 -1.30 16 2 C -0.04 -0.56 3.15 -91.77 -0.29 -0.85 16 3 C -0.14 -1.83 9.10 37.16 0.34 -1.50 16 4 C 0.21 3.63 5.50 -82.00 -0.45 3.18 16 5 N -0.51 -10.83 9.82 -6.86 -0.07 -10.90 16 6 C 0.39 9.25 6.85 -157.38 -1.08 8.17 16 7 C 0.05 1.22 4.49 -29.03 -0.13 1.09 16 8 C -0.51 -14.97 9.65 -34.44 -0.33 -15.30 16 9 H 0.07 2.31 7.98 -52.49 -0.42 1.89 16 10 C 0.07 2.18 5.47 -17.82 -0.10 2.09 16 11 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 12 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 16 N -0.50 -11.50 10.38 -9.64 -0.10 -11.60 16 17 C 0.17 3.26 7.61 -16.70 -0.13 3.13 16 18 C -0.24 -3.92 5.98 -104.35 -0.62 -4.55 16 19 C -0.07 -0.71 5.10 -28.43 -0.15 -0.86 16 20 C -0.10 -0.98 7.29 36.98 0.27 -0.71 16 21 S -0.07 -1.01 23.16 -107.50 -2.49 -3.50 16 22 H 0.07 0.98 8.05 -51.93 -0.42 0.57 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.83 6.95 -51.93 -0.36 0.46 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 29 H 0.04 1.11 7.58 -51.93 -0.39 0.71 16 30 H 0.05 1.25 7.19 -51.93 -0.37 0.88 16 31 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.09 0.81 8.13 -51.93 -0.42 0.39 16 33 H 0.09 0.75 8.13 -51.93 -0.42 0.33 16 34 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 304.06 15.07 4.58 4.58 Total: -1.00 -33.41 304.06 -9.23 -42.64 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -4.93 Total: -3.71 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -2.33 Total: -7.40 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.61 Total: -49.51 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -2.49 Total: -3.50 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.41 -9.23 -42.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259976702.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.444 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds