Wall clock time and date at job start Mon Mar 30 2020 06:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46833 * 2 1 4 4 C 1.50696 * 109.47177 * 119.99901 * 2 1 3 5 5 N 1.32097 * 120.06209 * 300.17242 * 4 2 1 6 6 C 1.31765 * 121.23952 * 180.26140 * 5 4 2 7 7 C 1.50700 * 119.40653 * 179.80161 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.72167 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99985 * 180.27663 * 10 8 7 12 12 Si 1.86800 * 119.99777 * 0.28166 * 10 8 7 13 13 H 1.48498 * 109.47109 * 89.99834 * 12 10 8 14 14 H 1.48507 * 109.46754 * 209.99574 * 12 10 8 15 15 H 1.48498 * 109.47278 * 329.99405 * 12 10 8 16 16 N 1.31612 * 121.18450 * 359.51894 * 6 5 4 17 17 C 1.33416 * 120.90720 * 0.25672 * 16 6 5 18 18 C 1.38668 * 119.81925 * 0.02562 * 17 16 6 19 19 C 1.49933 * 115.58772 * 179.97438 * 18 17 16 20 20 C 1.52645 * 112.29006 * 0.02562 * 19 18 17 21 21 S 1.76553 * 130.09165 * 179.97438 * 17 16 6 22 22 H 1.08999 * 109.47084 * 299.99825 * 1 2 3 23 23 H 1.08996 * 109.47223 * 60.00141 * 1 2 3 24 24 H 1.09003 * 109.46746 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47084 * 240.00174 * 2 1 3 26 26 H 1.09004 * 109.46734 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47101 * 299.99933 * 3 2 1 28 28 H 1.08999 * 109.47143 * 60.00211 * 3 2 1 29 29 H 1.09004 * 109.47210 * 149.72460 * 7 6 5 30 30 H 1.08994 * 109.47551 * 29.72113 * 7 6 5 31 31 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 32 32 H 1.08994 * 108.93139 * 239.25826 * 19 18 17 33 33 H 1.09006 * 108.92316 * 120.74210 * 19 18 17 34 34 H 1.09001 * 110.32754 * 241.10474 * 20 19 18 35 35 H 1.09004 * 110.41196 * 118.93315 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7112 -0.2621 2.4308 6 6 2.1417 -0.8621 3.5221 7 6 1.7536 -0.3127 4.8706 8 6 2.7849 0.6900 5.3202 9 1 3.6360 0.9080 4.6920 10 6 2.6387 1.3338 6.5307 11 7 3.5359 2.2129 6.9205 12 14 1.1664 0.9572 7.6170 13 1 1.5013 -0.1615 8.5342 14 1 0.8171 2.1618 8.4122 15 1 0.0105 0.5722 6.7680 16 7 2.8999 -1.9358 3.4555 17 6 3.2609 -2.4478 2.2775 18 6 2.8350 -1.8446 1.1038 19 6 3.2964 -2.4979 -0.1644 20 6 4.1632 -3.7264 0.0993 21 16 4.2572 -3.8577 1.9079 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6998 -1.1272 5.5930 30 1 0.7810 0.1739 4.7986 31 1 3.4332 2.6655 7.7723 32 1 3.8719 -1.7767 -0.7446 33 1 2.4241 -2.7990 -0.7446 34 1 5.1587 -3.5848 -0.3215 35 1 3.6979 -4.6175 -0.3220 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259976702.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:04 Heat of formation + Delta-G solvation = 5.424580 kcal Electronic energy + Delta-G solvation = -17638.572845 eV Core-core repulsion = 14954.054310 eV Total energy + Delta-G solvation = -2684.518535 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.24234 -37.46623 -36.51229 -35.16394 -33.49006 -32.55030 -29.89423 -28.04620 -26.55390 -25.91187 -24.15305 -22.60385 -21.49007 -19.49661 -19.14707 -17.66036 -16.78834 -16.65774 -16.13451 -15.95695 -15.41503 -15.09433 -14.95688 -14.53543 -14.16427 -13.99814 -13.88163 -13.75209 -13.09124 -12.93351 -12.75193 -12.52796 -12.40922 -12.31533 -12.12700 -12.02295 -11.81077 -11.66840 -11.62421 -11.42085 -10.85790 -10.34180 -10.09940 -8.77317 -8.37341 -6.44582 -0.22793 0.01239 0.16733 1.15244 1.34138 1.36877 1.48637 2.30870 2.60062 2.93236 3.01692 3.18008 3.36499 3.59409 3.77857 4.00647 4.05476 4.19009 4.19513 4.41099 4.55902 4.70094 4.76438 4.80132 4.81855 4.87910 4.91100 4.95251 5.02308 5.06283 5.31551 5.34480 5.41175 5.46405 5.98448 6.11927 6.54582 7.16728 7.17112 8.79715 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.018656 B = 0.006541 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.480226 B = 4279.579764 C = 5234.604675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.039 4.039 3 C -0.140 4.140 4 C 0.193 3.807 5 N -0.532 5.532 6 C 0.355 3.645 7 C 0.057 3.943 8 C -0.519 4.519 9 H 0.015 0.985 10 C 0.015 3.985 11 N -0.944 5.944 12 Si 0.955 3.045 13 H -0.263 1.263 14 H -0.273 1.273 15 H -0.244 1.244 16 N -0.540 5.540 17 C 0.132 3.868 18 C -0.224 4.224 19 C -0.070 4.070 20 C -0.085 4.085 21 S -0.096 6.096 22 H 0.040 0.960 23 H 0.093 0.907 24 H 0.056 0.944 25 H 0.126 0.874 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.036 0.964 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.272 0.728 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.303 -10.791 -21.202 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.059 4.059 3 C -0.197 4.197 4 C 0.044 3.956 5 N -0.247 5.247 6 C 0.087 3.913 7 C 0.018 3.982 8 C -0.558 4.558 9 H 0.034 0.966 10 C -0.183 4.183 11 N -0.583 5.583 12 Si 0.777 3.223 13 H -0.188 1.188 14 H -0.198 1.198 15 H -0.167 1.167 16 N -0.257 5.257 17 C -0.123 4.123 18 C -0.236 4.236 19 C -0.109 4.109 20 C -0.233 4.233 21 S 0.141 5.859 22 H 0.059 0.941 23 H 0.111 0.889 24 H 0.075 0.925 25 H 0.144 0.856 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.154 0.846 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.853 -11.251 -19.459 22.805 hybrid contribution -0.363 0.944 0.078 1.014 sum -4.216 -10.307 -19.381 22.353 Atomic orbital electron populations 1.21754 0.92472 1.02213 1.02939 1.20388 0.97574 0.96148 0.91743 1.21774 1.00422 0.94718 1.02821 1.22259 0.89370 0.89907 0.94089 1.67896 1.25859 1.32102 0.98812 1.23327 0.86958 0.85361 0.95654 1.18391 0.97428 0.95591 0.86772 1.20705 1.07520 1.22992 1.04541 0.96611 1.25922 0.99895 0.93796 0.98684 1.70032 1.37454 1.28054 1.22776 0.85596 0.79447 0.78561 0.78734 1.18776 1.19812 1.16750 1.67868 1.15486 1.14628 1.27760 1.24029 0.97498 0.99143 0.91616 1.22396 1.03945 1.00152 0.97089 1.20278 1.01889 0.96135 0.92555 1.24209 1.06435 1.02728 0.89969 1.85817 1.60397 1.29188 1.10460 0.94090 0.88870 0.92509 0.85601 0.93684 0.88575 0.94500 0.93830 0.92827 0.91913 0.86362 0.85563 0.84647 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.10 71.98 0.65 -2.19 16 2 C -0.04 -0.90 3.15 -11.54 -0.04 -0.93 16 3 C -0.14 -3.42 9.10 71.98 0.66 -2.76 16 4 C 0.19 6.52 5.50 42.83 0.24 6.76 16 5 N -0.53 -23.58 9.82 -175.61 -1.73 -25.30 16 6 C 0.36 17.84 6.85 138.81 0.95 18.79 16 7 C 0.06 3.08 4.49 29.10 0.13 3.21 16 8 C -0.52 -32.70 9.65 25.60 0.25 -32.46 16 9 H 0.02 1.11 7.98 -2.91 -0.02 1.09 16 10 C 0.01 0.92 5.47 84.66 0.46 1.38 16 11 N -0.94 -61.24 13.96 21.45 0.30 -60.94 16 12 Si 0.96 45.67 27.47 68.60 1.88 47.55 16 13 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 14 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 15 H -0.24 -10.84 6.54 99.48 0.65 -10.19 16 16 N -0.54 -26.20 10.38 -184.42 -1.91 -28.12 16 17 C 0.13 5.07 7.61 84.56 0.64 5.72 16 18 C -0.22 -6.77 5.98 -19.69 -0.12 -6.89 16 19 C -0.07 -1.10 5.10 29.49 0.15 -0.95 16 20 C -0.09 -1.16 7.29 71.86 0.52 -0.64 16 21 S -0.10 -2.71 23.16 -56.49 -1.31 -4.01 16 22 H 0.04 1.11 8.05 -2.39 -0.02 1.09 16 23 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.13 1.79 6.95 -2.39 -0.02 1.78 16 26 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 28 H 0.04 1.16 8.05 -2.39 -0.02 1.14 16 29 H 0.04 2.29 7.58 -2.38 -0.02 2.27 16 30 H 0.05 2.77 7.19 -2.39 -0.02 2.75 16 31 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 32 H 0.12 1.34 8.13 -2.39 -0.02 1.32 16 33 H 0.13 1.20 8.13 -2.38 -0.02 1.18 16 34 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -82.44 304.06 2.76 -79.68 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 1.02 Total: 2.11 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 4.50 Total: -10.96 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -3.34 Total: -114.37 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.88 Total: 47.55 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -1.31 Total: -4.01 kcal Total: -82.44 2.76 -79.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259976702.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.101 kcal (2) G-P(sol) polarization free energy of solvation -82.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds