Wall clock time and date at job start Mon Mar 30 2020 06:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47380 * 120.00265 * 2 1 3 5 5 C 1.38242 * 120.00084 * 299.72586 * 4 2 1 6 6 C 1.38224 * 120.00865 * 179.76652 * 5 4 2 7 7 C 1.38265 * 120.02769 * 0.50672 * 6 5 4 8 8 C 1.50701 * 119.99327 * 179.76426 * 7 6 5 9 9 C 1.50700 * 115.55020 * 234.68133 * 8 7 6 10 10 H 1.08006 * 120.00171 * 268.76394 * 9 8 7 11 11 C 1.37877 * 120.00130 * 88.76568 * 9 8 7 12 12 N 1.31511 * 120.00362 * 170.02260 * 11 9 8 13 13 Si 1.86804 * 119.99748 * 350.02064 * 11 9 8 14 14 H 1.48506 * 109.46853 * 85.13487 * 13 11 9 15 15 H 1.48497 * 109.47226 * 205.13908 * 13 11 9 16 16 H 1.48498 * 109.47078 * 325.14008 * 13 11 9 17 17 C 1.52997 * 117.49477 * 89.01586 * 8 7 6 18 18 C 1.52996 * 117.50109 * 20.35525 * 8 7 6 19 19 C 1.38190 * 120.01153 * 359.75095 * 7 6 5 20 20 C 1.38326 * 120.01051 * 120.00142 * 4 2 1 21 21 Cl 1.73597 * 120.01369 * 359.95440 * 20 4 2 22 22 H 1.09009 * 109.47376 * 60.00180 * 1 2 3 23 23 H 1.08994 * 109.47580 * 299.99827 * 1 2 3 24 24 H 1.09001 * 109.46788 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47395 * 240.00569 * 2 1 3 26 26 H 1.09003 * 109.47053 * 60.00263 * 3 2 1 27 27 H 1.09000 * 109.47376 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47480 * 300.00156 * 3 2 1 29 29 H 1.07993 * 120.00031 * 0.02562 * 5 4 2 30 30 H 1.07999 * 119.98776 * 180.23020 * 6 5 4 31 31 H 0.96997 * 120.00063 * 179.97438 * 12 11 9 32 32 H 1.09004 * 117.50037 * 359.97438 * 17 8 7 33 33 H 1.09000 * 117.50065 * 145.01780 * 17 8 7 34 34 H 1.08994 * 117.49922 * 214.97795 * 18 8 7 35 35 H 1.09002 * 117.49524 * 359.97438 * 18 8 7 36 36 H 1.07999 * 120.00961 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.7031 -0.2349 2.4860 6 6 2.1598 -0.8892 3.6147 7 6 2.9548 -2.0134 3.4886 8 6 3.4567 -2.7231 4.7197 9 6 4.9496 -2.9130 4.7972 10 1 5.4010 -3.8114 4.4027 11 6 5.7394 -1.9398 5.3718 12 7 7.0081 -2.1832 5.6184 13 14 5.0074 -0.2753 5.8000 14 1 4.3706 -0.3446 7.1398 15 1 6.0824 0.7491 5.8152 16 1 3.9873 0.0926 4.7855 17 6 2.5730 -3.8236 5.3102 18 6 2.7065 -2.4797 6.0307 19 6 3.2889 -2.4866 2.2339 20 6 2.8276 -1.8351 1.1036 21 17 3.2464 -2.4293 -0.4728 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.0855 0.6454 2.5852 30 1 1.8993 -0.5196 4.5954 31 1 7.5638 -1.4984 6.0223 32 1 1.6284 -4.0341 4.8085 33 1 3.0714 -4.6848 5.7552 34 1 3.2927 -2.4572 6.9493 35 1 1.8501 -1.8059 6.0028 36 1 3.9102 -3.3645 2.1355 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260056043.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:15 Heat of formation + Delta-G solvation = 25.345091 kcal Electronic energy + Delta-G solvation = -17854.043719 eV Core-core repulsion = 15136.052544 eV Total energy + Delta-G solvation = -2717.991174 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.50803 -37.09078 -35.97682 -34.52742 -32.15482 -30.25790 -29.13402 -27.09396 -25.86696 -23.40091 -22.60994 -21.16666 -20.12181 -19.13657 -16.95978 -15.90719 -15.36187 -14.92703 -14.62960 -14.18542 -13.74693 -13.64749 -13.29421 -12.93563 -12.73399 -12.52868 -12.21353 -12.15606 -11.44341 -11.36711 -11.17810 -11.14238 -10.96561 -10.83583 -10.52477 -10.43949 -10.19815 -9.95858 -9.74690 -9.44206 -8.72217 -8.60212 -8.23291 -7.76417 -6.17642 -4.20599 1.69742 1.83973 2.54317 3.28028 3.37715 3.44037 4.13033 4.40959 4.80534 4.85761 4.95138 5.11125 5.27212 5.39976 5.53115 5.53594 5.63954 5.67199 5.84899 5.88636 5.94713 6.01068 6.01278 6.04753 6.27469 6.29263 6.33005 6.39686 6.44743 6.58624 6.71009 6.85731 7.02130 7.06397 7.23181 7.45083 7.66398 8.41307 8.84631 9.45615 10.93193 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.021169 B = 0.007030 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.366871 B = 3981.747586 C = 4163.217506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C -0.141 4.141 4 C -0.093 4.093 5 C -0.111 4.111 6 C -0.118 4.118 7 C -0.006 4.006 8 C 0.028 3.972 9 C -0.487 4.487 10 H 0.080 0.920 11 C 0.084 3.916 12 N -0.891 5.891 13 Si 0.864 3.136 14 H -0.275 1.275 15 H -0.295 1.295 16 H -0.244 1.244 17 C -0.169 4.169 18 C -0.197 4.197 19 C -0.087 4.087 20 C -0.034 4.034 21 Cl -0.087 7.087 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.266 0.734 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.080 4.507 -8.729 15.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.079 4.079 3 C -0.199 4.199 4 C -0.094 4.094 5 C -0.129 4.129 6 C -0.136 4.136 7 C -0.007 4.007 8 C 0.027 3.973 9 C -0.524 4.524 10 H 0.098 0.902 11 C -0.120 4.120 12 N -0.527 5.527 13 Si 0.691 3.309 14 H -0.201 1.201 15 H -0.222 1.222 16 H -0.168 1.168 17 C -0.206 4.206 18 C -0.234 4.234 19 C -0.105 4.105 20 C -0.061 4.061 21 Cl -0.058 7.058 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.102 0.898 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.853 4.529 -8.799 15.441 hybrid contribution -0.042 0.935 0.271 0.974 sum -11.895 5.464 -8.528 15.623 Atomic orbital electron populations 1.21817 0.94577 1.01838 1.01460 1.20161 0.95758 0.96014 0.95975 1.21832 1.01445 0.95162 1.01434 1.19434 0.99411 0.95335 0.95206 1.20727 1.01038 0.99889 0.91234 1.21180 0.98052 0.96049 0.98333 1.19805 0.92074 0.94136 0.94692 1.18202 0.94351 0.97573 0.87140 1.20163 0.86316 1.05977 1.39951 0.90208 1.24939 0.94564 0.98390 0.94070 1.69901 1.06511 1.34294 1.42002 0.87058 0.79660 0.84096 0.80055 1.20090 1.22161 1.16810 1.22864 1.00245 0.92794 1.04710 1.23048 1.02452 0.99674 0.98262 1.20824 0.99246 1.00495 0.89965 1.20750 1.02350 0.97435 0.85523 1.98303 1.92605 1.87826 1.27068 0.92731 0.92618 0.92622 0.89795 0.92615 0.92482 0.92702 0.86242 0.86235 0.92420 0.90805 0.89128 0.89081 0.90689 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.01 37.15 0.33 -1.19 16 2 C -0.06 -0.78 2.99 -91.77 -0.27 -1.06 16 3 C -0.14 -1.66 9.00 37.16 0.33 -1.33 16 4 C -0.09 -1.48 4.78 -104.59 -0.50 -1.98 16 5 C -0.11 -1.79 8.71 -39.59 -0.34 -2.13 16 6 C -0.12 -2.19 7.37 -39.58 -0.29 -2.48 16 7 C -0.01 -0.13 4.65 -104.63 -0.49 -0.62 16 8 C 0.03 0.63 1.11 -156.82 -0.17 0.46 16 9 C -0.49 -13.14 9.12 -34.44 -0.31 -13.45 16 10 H 0.08 2.35 8.06 -52.48 -0.42 1.92 16 11 C 0.08 2.35 5.46 -17.82 -0.10 2.25 16 12 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 13 Si 0.86 20.91 25.44 -169.99 -4.32 16.59 16 14 H -0.28 -6.48 7.09 56.52 0.40 -6.08 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.24 -5.55 4.61 56.52 0.26 -5.28 16 17 C -0.17 -3.33 9.94 -26.69 -0.27 -3.60 16 18 C -0.20 -4.03 7.36 -26.70 -0.20 -4.22 16 19 C -0.09 -1.72 9.24 -39.55 -0.37 -2.09 16 20 C -0.03 -0.60 6.31 -39.50 -0.25 -0.85 16 21 Cl -0.09 -1.35 27.01 -51.86 -1.40 -2.75 16 22 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 23 H 0.05 0.58 7.40 -51.93 -0.38 0.20 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.08 1.10 6.17 -51.93 -0.32 0.78 16 26 H 0.05 0.63 7.37 -51.93 -0.38 0.25 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.12 1.61 7.10 -52.49 -0.37 1.24 16 30 H 0.12 2.12 6.23 -52.49 -0.33 1.80 16 31 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 34 H 0.09 1.97 7.56 -51.93 -0.39 1.58 16 35 H 0.07 1.36 6.58 -51.93 -0.34 1.02 16 36 H 0.13 2.72 8.06 -52.49 -0.42 2.29 16 LS Contribution 301.96 15.07 4.55 4.55 Total: -1.00 -28.34 301.96 -8.47 -36.81 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.18 Total: 2.91 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: -2.89 Total: -32.29 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.77 Total: -25.82 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.32 Total: 16.59 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -1.40 Total: -2.75 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.34 -8.47 -36.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260056043.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.160 kcal (2) G-P(sol) polarization free energy of solvation -28.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds