Wall clock time and date at job start Mon Mar 30 2020 06:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47380 * 120.00265 * 2 1 3 5 5 C 1.38242 * 120.00084 * 299.72586 * 4 2 1 6 6 C 1.38224 * 120.00865 * 179.76652 * 5 4 2 7 7 C 1.38265 * 120.02769 * 0.50672 * 6 5 4 8 8 C 1.50701 * 119.99327 * 179.76426 * 7 6 5 9 9 C 1.50700 * 115.55020 * 234.68133 * 8 7 6 10 10 H 1.08006 * 120.00171 * 268.76394 * 9 8 7 11 11 C 1.37877 * 120.00130 * 88.76568 * 9 8 7 12 12 N 1.31511 * 120.00362 * 170.02260 * 11 9 8 13 13 Si 1.86804 * 119.99748 * 350.02064 * 11 9 8 14 14 H 1.48506 * 109.46853 * 85.13487 * 13 11 9 15 15 H 1.48497 * 109.47226 * 205.13908 * 13 11 9 16 16 H 1.48498 * 109.47078 * 325.14008 * 13 11 9 17 17 C 1.52997 * 117.49477 * 89.01586 * 8 7 6 18 18 C 1.52996 * 117.50109 * 20.35525 * 8 7 6 19 19 C 1.38190 * 120.01153 * 359.75095 * 7 6 5 20 20 C 1.38326 * 120.01051 * 120.00142 * 4 2 1 21 21 Cl 1.73597 * 120.01369 * 359.95440 * 20 4 2 22 22 H 1.09009 * 109.47376 * 60.00180 * 1 2 3 23 23 H 1.08994 * 109.47580 * 299.99827 * 1 2 3 24 24 H 1.09001 * 109.46788 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47395 * 240.00569 * 2 1 3 26 26 H 1.09003 * 109.47053 * 60.00263 * 3 2 1 27 27 H 1.09000 * 109.47376 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47480 * 300.00156 * 3 2 1 29 29 H 1.07993 * 120.00031 * 0.02562 * 5 4 2 30 30 H 1.07999 * 119.98776 * 180.23020 * 6 5 4 31 31 H 0.96997 * 120.00063 * 179.97438 * 12 11 9 32 32 H 1.09004 * 117.50037 * 359.97438 * 17 8 7 33 33 H 1.09000 * 117.50065 * 145.01780 * 17 8 7 34 34 H 1.08994 * 117.49922 * 214.97795 * 18 8 7 35 35 H 1.09002 * 117.49524 * 359.97438 * 18 8 7 36 36 H 1.07999 * 120.00961 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.7031 -0.2349 2.4860 6 6 2.1598 -0.8892 3.6147 7 6 2.9548 -2.0134 3.4886 8 6 3.4567 -2.7231 4.7197 9 6 4.9496 -2.9130 4.7972 10 1 5.4010 -3.8114 4.4027 11 6 5.7394 -1.9398 5.3718 12 7 7.0081 -2.1832 5.6184 13 14 5.0074 -0.2753 5.8000 14 1 4.3706 -0.3446 7.1398 15 1 6.0824 0.7491 5.8152 16 1 3.9873 0.0926 4.7855 17 6 2.5730 -3.8236 5.3102 18 6 2.7065 -2.4797 6.0307 19 6 3.2889 -2.4866 2.2339 20 6 2.8276 -1.8351 1.1036 21 17 3.2464 -2.4293 -0.4728 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.0855 0.6454 2.5852 30 1 1.8993 -0.5196 4.5954 31 1 7.5638 -1.4984 6.0223 32 1 1.6284 -4.0341 4.8085 33 1 3.0714 -4.6848 5.7552 34 1 3.2927 -2.4572 6.9493 35 1 1.8501 -1.8059 6.0028 36 1 3.9102 -3.3645 2.1355 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260056043.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:15 Heat of formation + Delta-G solvation = 11.516475 kcal Electronic energy + Delta-G solvation = -17854.643373 eV Core-core repulsion = 15136.052544 eV Total energy + Delta-G solvation = -2718.590828 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.89050 -38.58107 -37.26703 -35.76439 -34.24898 -31.63507 -30.44615 -27.93036 -27.87680 -24.71931 -24.10238 -22.70226 -21.43703 -20.66663 -18.76386 -17.41495 -16.74588 -16.65185 -16.05120 -15.64430 -14.86849 -14.83959 -14.76382 -14.58121 -14.38954 -13.62904 -13.61856 -13.11309 -12.99012 -12.95530 -12.65386 -12.41366 -12.25431 -12.06582 -12.01802 -11.89904 -11.77164 -11.45725 -11.22676 -11.08773 -10.69185 -10.44679 -9.63670 -9.19243 -8.32014 -6.38739 0.30907 0.45731 1.21258 1.35698 1.41556 1.53559 2.38544 2.72646 3.03832 3.24392 3.69061 3.85742 4.00757 4.21952 4.31290 4.35652 4.37471 4.41745 4.57482 4.59826 4.78279 4.84714 4.86639 4.95287 4.98635 5.03556 5.07585 5.13377 5.29487 5.32803 5.44334 5.45939 5.50177 5.61548 5.68551 5.79945 6.02631 6.28065 6.68287 7.30987 8.82768 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.021169 B = 0.007030 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.366871 B = 3981.747586 C = 4163.217506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.062 4.062 3 C -0.140 4.140 4 C -0.085 4.085 5 C -0.101 4.101 6 C -0.124 4.124 7 C -0.027 4.027 8 C 0.005 3.995 9 C -0.486 4.486 10 H 0.031 0.969 11 C 0.026 3.974 12 N -0.946 5.946 13 Si 0.924 3.076 14 H -0.260 1.260 15 H -0.306 1.306 16 H -0.217 1.217 17 C -0.159 4.159 18 C -0.185 4.185 19 C -0.109 4.109 20 C -0.043 4.043 21 Cl -0.074 7.074 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.156 0.844 30 H 0.134 0.866 31 H 0.265 0.735 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.523 7.132 -9.545 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.080 4.080 3 C -0.198 4.198 4 C -0.086 4.086 5 C -0.119 4.119 6 C -0.142 4.142 7 C -0.028 4.028 8 C 0.004 3.996 9 C -0.523 4.523 10 H 0.049 0.951 11 C -0.172 4.172 12 N -0.585 5.585 13 Si 0.748 3.252 14 H -0.184 1.184 15 H -0.233 1.233 16 H -0.139 1.139 17 C -0.196 4.196 18 C -0.222 4.222 19 C -0.128 4.128 20 C -0.069 4.069 21 Cl -0.046 7.046 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.174 0.826 30 H 0.151 0.849 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.127 0.873 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.328 7.134 -9.628 19.456 hybrid contribution 1.036 -0.011 0.390 1.107 sum -14.292 7.123 -9.238 18.448 Atomic orbital electron populations 1.21801 0.92597 1.01935 1.03009 1.20260 0.97314 0.96362 0.94089 1.21837 1.00488 0.94389 1.03046 1.19887 0.97676 0.94214 0.96814 1.21100 1.00267 1.00316 0.90248 1.21350 0.97808 0.95197 0.99889 1.19582 0.94207 0.95383 0.93585 1.18029 0.91792 1.00394 0.89378 1.20317 0.89446 1.04028 1.38546 0.95122 1.25810 0.94748 1.02396 0.94293 1.70061 1.08407 1.35621 1.44420 0.86121 0.79209 0.78775 0.81122 1.18445 1.23313 1.13904 1.22891 1.00575 0.92194 1.03908 1.23074 1.02569 1.00376 0.96170 1.20746 1.00188 1.00686 0.91167 1.20863 1.02530 0.97979 0.85540 1.98302 1.92576 1.87819 1.25856 0.90692 0.91643 0.93283 0.90237 0.91734 0.94033 0.90462 0.82605 0.84865 0.92610 0.88071 0.90212 0.90650 0.87327 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.01 71.98 0.65 -1.72 16 2 C -0.06 -1.37 2.99 -11.54 -0.03 -1.40 16 3 C -0.14 -2.72 9.00 71.98 0.65 -2.07 16 4 C -0.09 -2.45 4.78 -19.84 -0.09 -2.55 16 5 C -0.10 -2.84 8.71 22.27 0.19 -2.64 16 6 C -0.12 -4.17 7.37 22.27 0.16 -4.01 16 7 C -0.03 -1.08 4.65 -19.87 -0.09 -1.17 16 8 C 0.00 0.22 1.11 -53.68 -0.06 0.16 16 9 C -0.49 -27.42 9.12 25.60 0.23 -27.19 16 10 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 11 C 0.03 1.48 5.46 84.66 0.46 1.94 16 12 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16 13 Si 0.92 43.08 25.44 68.60 1.75 44.83 16 14 H -0.26 -11.39 7.09 99.48 0.71 -10.68 16 15 H -0.31 -14.70 7.11 99.48 0.71 -13.99 16 16 H -0.22 -9.03 4.61 99.48 0.46 -8.57 16 17 C -0.16 -6.13 9.94 30.62 0.30 -5.82 16 18 C -0.19 -7.17 7.36 30.62 0.23 -6.95 16 19 C -0.11 -4.36 9.24 22.29 0.21 -4.15 16 20 C -0.04 -1.45 6.31 22.32 0.14 -1.31 16 21 Cl -0.07 -2.26 27.01 -2.72 -0.07 -2.33 16 22 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 23 H 0.06 1.02 7.40 -2.39 -0.02 1.00 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.08 1.84 6.17 -2.39 -0.01 1.82 16 26 H 0.06 1.14 7.37 -2.39 -0.02 1.12 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.16 3.24 7.10 -2.91 -0.02 3.22 16 30 H 0.13 4.06 6.23 -2.91 -0.02 4.04 16 31 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 32 H 0.10 3.35 8.14 -2.38 -0.02 3.33 16 33 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 34 H 0.07 3.16 7.56 -2.39 -0.02 3.14 16 35 H 0.11 3.48 6.58 -2.39 -0.02 3.46 16 36 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -64.49 301.96 5.73 -58.76 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.81 Total: 16.60 kcal Atomic # 6 Polarization: -61.83 SS G_CDS: 2.95 Total: -58.88 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.30 Total: -58.98 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.75 Total: 44.83 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.07 Total: -2.33 kcal Total: -64.49 5.73 -58.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260056043.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.279 kcal (2) G-P(sol) polarization free energy of solvation -64.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds