Wall clock time and date at job start Mon Mar 30 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38265 * 119.98955 * 2 1 4 4 C 1.38192 * 120.01187 * 180.27701 * 3 2 1 5 5 C 1.38376 * 119.98776 * 359.74358 * 4 3 2 6 6 Cl 1.73598 * 120.01314 * 179.97438 * 5 4 3 7 7 C 1.38333 * 119.97267 * 0.02562 * 5 4 3 8 8 C 1.50697 * 120.00472 * 179.97438 * 7 5 4 9 9 C 1.38223 * 119.98384 * 179.77064 * 2 1 3 10 10 C 1.50702 * 119.99484 * 359.97438 * 9 2 1 11 11 H 1.09000 * 109.46915 * 7.38059 * 10 9 2 12 12 C 1.50693 * 109.47096 * 127.38341 * 10 9 2 13 13 H 1.08001 * 120.00041 * 4.95678 * 12 10 9 14 14 C 1.37875 * 120.00178 * 184.96089 * 12 10 9 15 15 N 1.31520 * 119.99926 * 6.86731 * 14 12 10 16 16 Si 1.86796 * 120.00221 * 186.86815 * 14 12 10 17 17 H 1.48497 * 109.47221 * 60.00033 * 16 14 12 18 18 H 1.48502 * 109.47210 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47334 * 299.99993 * 16 14 12 20 20 C 1.52998 * 109.47232 * 247.38393 * 10 9 2 21 21 C 1.53006 * 117.49972 * 357.87569 * 20 10 9 22 22 C 1.52999 * 60.00108 * 107.48869 * 21 20 10 23 23 H 1.09001 * 109.46777 * 264.85344 * 1 2 3 24 24 H 1.08995 * 109.46634 * 24.85265 * 1 2 3 25 25 H 1.08995 * 109.47128 * 144.85612 * 1 2 3 26 26 H 1.07993 * 119.99122 * 0.02562 * 3 2 1 27 27 H 1.07996 * 120.00627 * 179.76970 * 4 3 2 28 28 H 1.09004 * 109.47081 * 273.75314 * 8 7 5 29 29 H 1.08998 * 109.47770 * 33.74978 * 8 7 5 30 30 H 1.09003 * 109.47372 * 153.75364 * 8 7 5 31 31 H 0.96994 * 120.00035 * 180.02562 * 15 14 12 32 32 H 1.09001 * 115.55978 * 212.18440 * 20 10 9 33 33 H 1.09004 * 117.49893 * 214.98126 * 21 20 10 34 34 H 1.09003 * 117.49713 * 359.97438 * 21 20 10 35 35 H 1.08991 * 117.49881 * 252.51007 * 22 21 20 36 36 H 1.09002 * 117.49782 * 107.48703 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5801 1.1981 -0.0058 5 6 4.2722 -0.0002 -0.0062 6 17 6.0081 -0.0002 -0.0142 7 6 3.5802 -1.1980 -0.0014 8 6 4.3332 -2.5033 -0.0024 9 6 2.1978 -1.1972 0.0048 10 6 1.4438 -2.5021 0.0106 11 1 0.3796 -2.3073 -0.1218 12 6 1.9390 -3.3733 -1.1148 13 1 2.7747 -3.0522 -1.7188 14 6 1.3250 -4.5804 -1.3736 15 7 0.2266 -4.9108 -0.7301 16 14 2.0531 -5.7466 -2.6381 17 1 3.4293 -6.1248 -2.2281 18 1 1.2114 -6.9666 -2.7290 19 1 2.0979 -5.0758 -3.9623 20 6 1.6695 -3.2155 1.3451 21 6 2.6043 -2.5464 2.3548 22 6 1.0946 -2.5603 2.6026 23 1 -0.3633 -0.0922 1.0236 24 1 -0.3632 0.9325 -0.4319 25 1 -0.3633 -0.8403 -0.5915 26 1 1.6579 2.1326 0.0004 27 1 4.1198 2.1335 -0.0095 28 1 4.5687 -2.7861 -1.0285 29 1 5.2572 -2.3903 0.5644 30 1 3.7182 -3.2779 0.4559 31 1 -0.2052 -5.7601 -0.9118 32 1 1.6723 -4.3047 1.3015 33 1 3.2222 -3.1954 2.9754 34 1 3.0589 -1.5981 2.0681 35 1 0.5557 -1.6211 2.4791 36 1 0.7192 -3.2185 3.3862 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260063730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:42 Heat of formation + Delta-G solvation = 31.654309 kcal Electronic energy + Delta-G solvation = -18519.747331 eV Core-core repulsion = 15802.029745 eV Total energy + Delta-G solvation = -2717.717586 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.80154 -36.64999 -35.86574 -32.98827 -32.75590 -31.54350 -28.07171 -26.46167 -26.02178 -23.31748 -21.57604 -21.05845 -20.10079 -18.76141 -16.71302 -15.91621 -15.37415 -14.74842 -14.40634 -14.01011 -13.77693 -12.93574 -12.70055 -12.68128 -12.36941 -12.29135 -12.07902 -11.67801 -11.13565 -10.98684 -10.94226 -10.86927 -10.76454 -10.61129 -10.43171 -10.28145 -10.17734 -9.90955 -9.53736 -9.08170 -8.63548 -8.28452 -7.87622 -7.77320 -6.08488 -4.10441 1.75314 1.94265 2.64088 3.28933 3.34073 3.37546 4.19613 4.40508 4.87831 5.22400 5.29122 5.39365 5.50461 5.76964 5.81995 5.85748 6.02397 6.08659 6.12424 6.16176 6.20340 6.34534 6.41864 6.55640 6.57536 6.61786 6.70031 6.75623 6.94694 6.99247 7.11347 7.25474 7.31968 7.42809 7.63107 7.77900 7.88754 8.30120 8.90337 9.51419 10.99344 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.017585 B = 0.008567 C = 0.007296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.849217 B = 3267.532603 C = 3836.712272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.124 4.124 4 C -0.130 4.130 5 C -0.050 4.050 6 Cl -0.092 7.092 7 C -0.050 4.050 8 C -0.115 4.115 9 C -0.024 4.024 10 C 0.100 3.900 11 H 0.058 0.942 12 C -0.509 4.509 13 H 0.063 0.937 14 C 0.067 3.933 15 N -0.884 5.884 16 Si 0.885 3.115 17 H -0.275 1.275 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.084 4.084 21 C -0.207 4.207 22 C -0.202 4.202 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.262 0.738 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.884 8.119 3.151 9.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.142 4.142 4 C -0.149 4.149 5 C -0.076 4.076 6 Cl -0.064 7.064 7 C -0.050 4.050 8 C -0.171 4.171 9 C -0.025 4.025 10 C 0.082 3.918 11 H 0.076 0.924 12 C -0.547 4.547 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.521 5.521 16 Si 0.712 3.288 17 H -0.200 1.200 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.103 4.103 21 C -0.244 4.244 22 C -0.239 4.239 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.137 0.863 27 H 0.137 0.863 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.897 7.963 3.164 9.413 hybrid contribution 0.585 -0.550 -0.627 1.019 sum 4.482 7.413 2.537 9.026 Atomic orbital electron populations 1.20845 0.91406 1.02545 1.02231 1.19924 0.96302 0.92577 1.00198 1.20785 0.93084 0.97461 1.02858 1.20712 0.94171 0.96047 1.03969 1.20795 0.82980 0.95035 1.08829 1.98300 1.11970 1.98891 1.97194 1.19632 0.93587 0.93880 0.97947 1.21158 0.98641 0.95064 1.02242 1.20272 0.92176 0.96467 0.93563 1.17601 0.96098 0.86420 0.91726 0.92403 1.21086 1.16273 1.02921 1.14446 0.91878 1.24918 0.94523 0.98129 0.96021 1.69975 1.17239 1.22809 1.42109 0.86765 0.79381 0.80521 0.82110 1.20046 1.21363 1.20269 1.22578 0.98529 0.99703 0.89503 1.23233 0.92395 1.03171 1.05584 1.22897 0.95855 1.02523 1.02631 0.91672 0.92637 0.89872 0.86346 0.86275 0.91419 0.93543 0.87744 0.92851 0.87533 0.90722 0.89104 0.90259 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 9.31 36.01 0.34 -1.52 16 2 C -0.09 -1.63 5.88 -104.62 -0.62 -2.25 16 3 C -0.12 -1.98 9.68 -39.59 -0.38 -2.37 16 4 C -0.13 -2.10 9.83 -39.55 -0.39 -2.49 16 5 C -0.05 -0.89 6.31 -39.50 -0.25 -1.14 16 6 Cl -0.09 -1.46 27.37 -51.86 -1.42 -2.88 16 7 C -0.05 -0.97 3.73 -104.59 -0.39 -1.36 16 8 C -0.12 -2.23 6.96 36.00 0.25 -1.98 16 9 C -0.02 -0.50 3.57 -104.63 -0.37 -0.87 16 10 C 0.10 2.26 1.81 -92.93 -0.17 2.09 16 11 H 0.06 1.42 5.51 -51.93 -0.29 1.14 16 12 C -0.51 -12.73 6.54 -34.44 -0.23 -12.95 16 13 H 0.06 1.59 5.81 -52.49 -0.31 1.29 16 14 C 0.07 1.71 5.05 -17.82 -0.09 1.62 16 15 N -0.88 -23.64 12.49 55.43 0.69 -22.95 16 16 Si 0.88 20.30 29.54 -169.99 -5.02 15.27 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 C -0.08 -1.83 4.01 -90.62 -0.36 -2.19 16 21 C -0.21 -3.94 7.74 -26.73 -0.21 -4.14 16 22 C -0.20 -3.86 10.14 -26.73 -0.27 -4.13 16 23 H 0.06 1.00 7.77 -51.93 -0.40 0.59 16 24 H 0.05 0.76 8.05 -51.93 -0.42 0.34 16 25 H 0.08 1.52 6.28 -51.93 -0.33 1.19 16 26 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.07 1.35 7.17 -51.93 -0.37 0.98 16 29 H 0.05 0.81 7.07 -51.93 -0.37 0.44 16 30 H 0.10 2.19 3.94 -51.93 -0.20 1.98 16 31 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.11 2.58 7.26 -51.93 -0.38 2.20 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.09 1.76 5.08 -51.93 -0.26 1.50 16 35 H 0.08 1.47 7.77 -51.93 -0.40 1.07 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 293.71 15.07 4.43 4.43 Total: -1.00 -25.50 293.71 -9.01 -34.51 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -4.55 Total: 5.27 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: -3.14 Total: -33.66 kcal Atomic # 7 Polarization: -23.64 SS G_CDS: 0.69 Total: -22.95 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -1.42 Total: -2.88 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -25.50 -9.01 -34.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260063730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.167 kcal (2) G-P(sol) polarization free energy of solvation -25.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds