Wall clock time and date at job start Mon Mar 30 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38265 * 119.98955 * 2 1 4 4 C 1.38192 * 120.01187 * 180.27701 * 3 2 1 5 5 C 1.38376 * 119.98776 * 359.74358 * 4 3 2 6 6 Cl 1.73598 * 120.01314 * 179.97438 * 5 4 3 7 7 C 1.38333 * 119.97267 * 0.02562 * 5 4 3 8 8 C 1.50697 * 120.00472 * 179.97438 * 7 5 4 9 9 C 1.38223 * 119.98384 * 179.77064 * 2 1 3 10 10 C 1.50702 * 119.99484 * 359.97438 * 9 2 1 11 11 H 1.09000 * 109.46915 * 7.38059 * 10 9 2 12 12 C 1.50693 * 109.47096 * 127.38341 * 10 9 2 13 13 H 1.08001 * 120.00041 * 4.95678 * 12 10 9 14 14 C 1.37875 * 120.00178 * 184.96089 * 12 10 9 15 15 N 1.31520 * 119.99926 * 6.86731 * 14 12 10 16 16 Si 1.86796 * 120.00221 * 186.86815 * 14 12 10 17 17 H 1.48497 * 109.47221 * 60.00033 * 16 14 12 18 18 H 1.48502 * 109.47210 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47334 * 299.99993 * 16 14 12 20 20 C 1.52998 * 109.47232 * 247.38393 * 10 9 2 21 21 C 1.53006 * 117.49972 * 357.87569 * 20 10 9 22 22 C 1.52999 * 60.00108 * 107.48869 * 21 20 10 23 23 H 1.09001 * 109.46777 * 264.85344 * 1 2 3 24 24 H 1.08995 * 109.46634 * 24.85265 * 1 2 3 25 25 H 1.08995 * 109.47128 * 144.85612 * 1 2 3 26 26 H 1.07993 * 119.99122 * 0.02562 * 3 2 1 27 27 H 1.07996 * 120.00627 * 179.76970 * 4 3 2 28 28 H 1.09004 * 109.47081 * 273.75314 * 8 7 5 29 29 H 1.08998 * 109.47770 * 33.74978 * 8 7 5 30 30 H 1.09003 * 109.47372 * 153.75364 * 8 7 5 31 31 H 0.96994 * 120.00035 * 180.02562 * 15 14 12 32 32 H 1.09001 * 115.55978 * 212.18440 * 20 10 9 33 33 H 1.09004 * 117.49893 * 214.98126 * 21 20 10 34 34 H 1.09003 * 117.49713 * 359.97438 * 21 20 10 35 35 H 1.08991 * 117.49881 * 252.51007 * 22 21 20 36 36 H 1.09002 * 117.49782 * 107.48703 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5801 1.1981 -0.0058 5 6 4.2722 -0.0002 -0.0062 6 17 6.0081 -0.0002 -0.0142 7 6 3.5802 -1.1980 -0.0014 8 6 4.3332 -2.5033 -0.0024 9 6 2.1978 -1.1972 0.0048 10 6 1.4438 -2.5021 0.0106 11 1 0.3796 -2.3073 -0.1218 12 6 1.9390 -3.3733 -1.1148 13 1 2.7747 -3.0522 -1.7188 14 6 1.3250 -4.5804 -1.3736 15 7 0.2266 -4.9108 -0.7301 16 14 2.0531 -5.7466 -2.6381 17 1 3.4293 -6.1248 -2.2281 18 1 1.2114 -6.9666 -2.7290 19 1 2.0979 -5.0758 -3.9623 20 6 1.6695 -3.2155 1.3451 21 6 2.6043 -2.5464 2.3548 22 6 1.0946 -2.5603 2.6026 23 1 -0.3633 -0.0922 1.0236 24 1 -0.3632 0.9325 -0.4319 25 1 -0.3633 -0.8403 -0.5915 26 1 1.6579 2.1326 0.0004 27 1 4.1198 2.1335 -0.0095 28 1 4.5687 -2.7861 -1.0285 29 1 5.2572 -2.3903 0.5644 30 1 3.7182 -3.2779 0.4559 31 1 -0.2052 -5.7601 -0.9118 32 1 1.6723 -4.3047 1.3015 33 1 3.2222 -3.1954 2.9754 34 1 3.0589 -1.5981 2.0681 35 1 0.5557 -1.6211 2.4791 36 1 0.7192 -3.2185 3.3862 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260063730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:42 Heat of formation + Delta-G solvation = 21.738519 kcal Electronic energy + Delta-G solvation = -18520.177312 eV Core-core repulsion = 15802.029745 eV Total energy + Delta-G solvation = -2718.147567 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.25544 -38.13193 -37.20985 -34.80200 -34.17142 -33.08083 -29.71062 -28.02578 -27.35877 -25.12867 -23.09860 -22.54577 -21.47896 -20.37845 -18.55277 -17.34661 -16.81515 -16.52842 -16.00525 -15.48850 -15.27384 -14.37871 -14.14029 -14.08349 -13.97032 -13.80027 -13.55441 -13.13818 -12.81948 -12.77973 -12.49482 -12.32674 -12.29587 -12.16585 -11.90572 -11.86809 -11.64467 -11.58491 -11.17928 -10.78639 -10.44197 -10.05109 -9.26687 -9.19007 -8.05789 -6.10843 0.38330 0.57664 1.31926 1.42579 1.44794 1.50360 2.46309 2.83684 3.21908 3.31839 4.01916 4.07364 4.13593 4.25781 4.38978 4.46874 4.47503 4.54657 4.78435 4.81613 4.84325 4.91975 4.94247 5.00257 5.07167 5.21034 5.28824 5.39815 5.44285 5.48523 5.58266 5.66907 5.74134 5.76353 5.88392 6.11309 6.17164 6.44952 6.95478 7.52346 9.01191 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.017585 B = 0.008567 C = 0.007296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.849217 B = 3267.532603 C = 3836.712272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.101 4.101 3 C -0.114 4.114 4 C -0.123 4.123 5 C -0.058 4.058 6 Cl -0.078 7.078 7 C -0.067 4.067 8 C -0.108 4.108 9 C -0.049 4.049 10 C 0.106 3.894 11 H 0.032 0.968 12 C -0.509 4.509 13 H 0.055 0.945 14 C 0.024 3.976 15 N -0.911 5.911 16 Si 0.933 3.067 17 H -0.271 1.271 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.106 4.106 21 C -0.185 4.185 22 C -0.190 4.190 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.053 0.947 26 H 0.156 0.844 27 H 0.150 0.850 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.259 0.741 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.783 10.401 3.609 12.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.102 4.102 3 C -0.132 4.132 4 C -0.141 4.141 5 C -0.085 4.085 6 Cl -0.049 7.049 7 C -0.068 4.068 8 C -0.164 4.164 9 C -0.049 4.049 10 C 0.088 3.912 11 H 0.050 0.950 12 C -0.547 4.547 13 H 0.073 0.927 14 C -0.176 4.176 15 N -0.551 5.551 16 Si 0.760 3.240 17 H -0.197 1.197 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.125 4.125 21 C -0.221 4.221 22 C -0.227 4.227 23 H 0.090 0.910 24 H 0.104 0.896 25 H 0.072 0.928 26 H 0.173 0.827 27 H 0.168 0.832 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.809 10.248 3.619 11.885 hybrid contribution 0.347 -1.181 -0.770 1.452 sum 5.156 9.067 2.849 10.812 Atomic orbital electron populations 1.20810 0.90540 1.02840 1.02399 1.20183 0.97176 0.92720 1.00073 1.21156 0.93240 0.97937 1.00883 1.21112 0.94425 0.96581 1.02004 1.20918 0.83933 0.94994 1.08608 1.98303 1.10618 1.98860 1.97114 1.19598 0.93429 0.94417 0.99314 1.21012 0.98990 0.95008 1.01393 1.20103 0.92639 0.96091 0.96109 1.17348 0.94770 0.87688 0.91411 0.95036 1.21348 1.15414 1.03216 1.14728 0.92699 1.25491 0.94937 0.99486 0.97651 1.70075 1.18379 1.22991 1.43628 0.85998 0.78813 0.78946 0.80292 1.19656 1.21405 1.20240 1.22222 1.01996 0.97862 0.90388 1.23174 0.92405 1.02780 1.03767 1.22949 0.96171 1.02496 1.01064 0.90955 0.89631 0.92805 0.82684 0.83222 0.92773 0.92030 0.89748 0.93227 0.90918 0.89491 0.88987 0.89589 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.42 9.31 71.24 0.66 -2.75 16 2 C -0.10 -3.49 5.88 -19.86 -0.12 -3.61 16 3 C -0.11 -3.23 9.68 22.27 0.22 -3.01 16 4 C -0.12 -3.49 9.83 22.29 0.22 -3.27 16 5 C -0.06 -1.92 6.31 22.33 0.14 -1.78 16 6 Cl -0.08 -2.27 27.37 -2.72 -0.07 -2.35 16 7 C -0.07 -2.54 3.73 -19.84 -0.07 -2.62 16 8 C -0.11 -4.19 6.96 71.23 0.50 -3.69 16 9 C -0.05 -1.98 3.57 -19.87 -0.07 -2.05 16 10 C 0.11 4.94 1.81 -12.29 -0.02 4.91 16 11 H 0.03 1.62 5.51 -2.39 -0.01 1.61 16 12 C -0.51 -26.27 6.54 25.60 0.17 -26.10 16 13 H 0.05 2.86 5.81 -2.91 -0.02 2.84 16 14 C 0.02 1.25 5.05 84.65 0.43 1.68 16 15 N -0.91 -50.64 12.49 21.45 0.27 -50.37 16 16 Si 0.93 42.66 29.54 68.60 2.03 44.69 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 C -0.11 -4.68 4.01 -10.79 -0.04 -4.73 16 21 C -0.18 -6.89 7.74 30.60 0.24 -6.65 16 22 C -0.19 -7.14 10.14 30.60 0.31 -6.83 16 23 H 0.07 2.11 7.77 -2.39 -0.02 2.09 16 24 H 0.08 2.09 8.05 -2.39 -0.02 2.07 16 25 H 0.05 2.00 6.28 -2.39 -0.02 1.98 16 26 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 27 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 28 H 0.05 2.19 7.17 -2.38 -0.02 2.17 16 29 H 0.06 2.12 7.07 -2.39 -0.02 2.10 16 30 H 0.08 3.61 3.94 -2.39 -0.01 3.60 16 31 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 32 H 0.07 3.69 7.26 -2.39 -0.02 3.67 16 33 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 34 H 0.09 3.46 5.08 -2.39 -0.01 3.45 16 35 H 0.09 3.10 7.77 -2.39 -0.02 3.08 16 36 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -55.70 293.71 5.86 -49.84 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 1.09 Total: 18.68 kcal Atomic # 6 Polarization: -63.04 SS G_CDS: 2.55 Total: -60.49 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.27 Total: -50.37 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 17 Polarization: -2.27 SS G_CDS: -0.07 Total: -2.35 kcal Total: -55.70 5.86 -49.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260063730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.579 kcal (2) G-P(sol) polarization free energy of solvation -55.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds