Wall clock time and date at job start Mon Mar 30 2020 06:20:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 C 1.38234 * 119.99710 * 2 1
4 4 C 1.38325 * 119.99200 * 180.02562 * 3 2 1
5 5 Cl 1.73596 * 120.01916 * 179.97438 * 4 3 2
6 6 C 1.38385 * 119.97021 * 359.73050 * 4 3 2
7 7 C 1.50701 * 120.00712 * 180.27399 * 6 4 3
8 8 C 1.38188 * 119.98528 * 0.54180 * 6 4 3
9 9 C 1.50702 * 119.99183 * 179.73103 * 8 6 4
10 10 H 1.08992 * 109.47222 * 354.20059 * 9 8 6
11 11 C 1.50706 * 109.46926 * 234.20155 * 9 8 6
12 12 H 1.07999 * 119.99743 * 0.02562 * 11 9 8
13 13 C 1.37875 * 119.99649 * 179.97438 * 11 9 8
14 14 N 1.31506 * 120.00600 * 0.02562 * 13 11 9
15 15 Si 1.86802 * 119.99551 * 179.97438 * 13 11 9
16 16 H 1.48505 * 109.46752 * 90.00089 * 15 13 11
17 17 H 1.48502 * 109.47100 * 209.99863 * 15 13 11
18 18 H 1.48497 * 109.47546 * 330.00274 * 15 13 11
19 19 C 1.53000 * 109.46933 * 114.20486 * 9 8 6
20 20 C 1.52994 * 117.49995 * 299.99493 * 19 9 8
21 21 C 1.52999 * 60.03419 * 252.50051 * 20 19 9
22 22 C 1.38223 * 119.99035 * 180.02562 * 2 1 3
23 23 H 1.09005 * 109.47396 * 269.97872 * 1 2 3
24 24 H 1.08998 * 109.47398 * 29.97936 * 1 2 3
25 25 H 1.08997 * 109.47342 * 149.97972 * 1 2 3
26 26 H 1.08005 * 120.00508 * 0.04322 * 3 2 1
27 27 H 1.09005 * 109.46704 * 264.76078 * 7 6 4
28 28 H 1.08996 * 109.47350 * 24.75912 * 7 6 4
29 29 H 1.09000 * 109.47341 * 144.76584 * 7 6 4
30 30 H 0.96995 * 120.00499 * 179.97438 * 14 13 11
31 31 H 1.09005 * 115.55118 * 85.67378 * 19 9 8
32 32 H 1.08997 * 117.50087 * 0.02562 * 20 19 9
33 33 H 1.09003 * 117.49791 * 145.00246 * 20 19 9
34 34 H 1.09001 * 117.49521 * 107.49861 * 21 20 19
35 35 H 1.09002 * 117.49911 * 252.51693 * 21 20 19
36 36 H 1.07999 * 119.99109 * 359.95956 * 22 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1980 1.1972 0.0000
4 6 3.5813 1.1971 -0.0005
5 17 4.4499 2.7001 -0.0012
6 6 4.2725 -0.0018 0.0046
7 6 5.7795 -0.0029 0.0102
8 6 3.5805 -1.1980 -0.0011
9 6 4.3331 -2.5036 -0.0017
10 1 5.4007 -2.3076 -0.1010
11 6 3.8682 -3.3508 -1.1581
12 1 3.1045 -2.9806 -1.8260
13 6 4.4187 -4.5981 -1.3639
14 7 5.3490 -5.0487 -0.5509
15 14 3.8419 -5.6485 -2.7969
16 1 4.6753 -5.3572 -3.9910
17 1 3.9711 -7.0846 -2.4414
18 1 2.4210 -5.3388 -3.0974
19 6 4.0705 -3.2442 1.3111
20 6 4.4756 -2.5447 2.6101
21 6 5.2860 -3.7380 2.0998
22 6 2.1978 -1.1972 -0.0005
23 1 -0.3634 -0.0004 1.0277
24 1 -0.3634 0.8901 -0.5135
25 1 -0.3634 -0.8898 -0.5141
26 1 1.6580 2.1326 0.0007
27 1 6.1465 -0.0991 -1.0116
28 1 6.1419 0.9309 0.4400
29 1 6.1400 -0.8413 0.6062
30 1 5.7359 -5.9263 -0.6955
31 1 3.1726 -3.8619 1.3309
32 1 4.9289 -1.5567 2.5295
33 1 3.8443 -2.7021 3.4846
34 1 6.2727 -3.5351 1.6834
35 1 5.1874 -4.6805 2.6384
36 1 1.6575 -2.1323 -0.0003
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260116152.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:20:56
Heat of formation + Delta-G solvation = 19.991647 kcal
Electronic energy + Delta-G solvation = -17994.512475 eV
Core-core repulsion = 15276.289158 eV
Total energy + Delta-G solvation = -2718.223317 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 264.098 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.34949 -36.61397 -35.96997 -33.44152 -32.64150 -30.83378 -28.92445 -27.24256
-24.43482 -23.62668 -21.70733 -21.21705 -20.06042 -18.71831 -16.61920 -15.62047
-15.27565 -14.66512 -14.50750 -14.10351 -13.81146 -13.03483 -12.89480 -12.80657
-12.44230 -12.37930 -11.99853 -11.84616 -11.54809 -11.10166 -11.07250 -10.97709
-10.67454 -10.55202 -10.45100 -10.32520 -9.98043 -9.83027 -9.69950 -8.78006
-8.71974 -8.32669 -7.94120 -7.78571 -6.03376 -4.10154 1.78094 1.92913
2.56447 3.27721 3.35156 3.38076 4.21536 4.42321 5.05831 5.21049
5.27347 5.33336 5.49179 5.67864 5.78980 5.84524 5.90378 5.98292
6.10578 6.20020 6.20897 6.24344 6.28492 6.36375 6.50845 6.68728
6.73194 6.79766 6.92027 7.04688 7.09905 7.19711 7.25520 7.46404
7.56107 7.77623 7.94034 8.31212 8.91650 9.53997 11.02414
Molecular weight = 264.10amu
Principal moments of inertia in cm(-1)
A = 0.018503 B = 0.006955 C = 0.006396
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1512.897063 B = 4024.715504 C = 4376.844215
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C -0.091 4.091
3 C -0.135 4.135
4 C -0.033 4.033
5 Cl -0.093 7.093
6 C -0.091 4.091
7 C -0.115 4.115
8 C -0.012 4.012
9 C 0.101 3.899
10 H 0.047 0.953
11 C -0.516 4.516
12 H 0.058 0.942
13 C 0.069 3.931
14 N -0.873 5.873
15 Si 0.887 3.113
16 H -0.281 1.281
17 H -0.287 1.287
18 H -0.275 1.275
19 C -0.080 4.080
20 C -0.227 4.227
21 C -0.136 4.136
22 C -0.098 4.098
23 H 0.065 0.935
24 H 0.060 0.940
25 H 0.066 0.934
26 H 0.119 0.881
27 H 0.070 0.930
28 H 0.060 0.940
29 H 0.076 0.924
30 H 0.259 0.741
31 H 0.082 0.918
32 H 0.077 0.923
33 H 0.070 0.930
34 H 0.085 0.915
35 H 0.070 0.930
36 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.035 9.051 2.954 10.341
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.091 4.091
3 C -0.154 4.154
4 C -0.060 4.060
5 Cl -0.064 7.064
6 C -0.092 4.092
7 C -0.171 4.171
8 C -0.012 4.012
9 C 0.083 3.917
10 H 0.065 0.935
11 C -0.554 4.554
12 H 0.076 0.924
13 C -0.134 4.134
14 N -0.510 5.510
15 Si 0.715 3.285
16 H -0.208 1.208
17 H -0.213 1.213
18 H -0.199 1.199
19 C -0.099 4.099
20 C -0.264 4.264
21 C -0.173 4.173
22 C -0.116 4.116
23 H 0.084 0.916
24 H 0.079 0.921
25 H 0.085 0.915
26 H 0.137 0.863
27 H 0.088 0.912
28 H 0.079 0.921
29 H 0.094 0.906
30 H 0.069 0.931
31 H 0.100 0.900
32 H 0.096 0.904
33 H 0.089 0.911
34 H 0.104 0.896
35 H 0.088 0.912
36 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -3.833 9.022 2.991 10.248
hybrid contribution -0.218 -0.563 -0.782 0.988
sum -4.051 8.459 2.209 9.636
Atomic orbital electron populations
1.20709 0.91460 1.02366 1.01855 1.19763 0.95671 0.92714 1.00986
1.20575 0.91651 0.97932 1.05254 1.20680 0.91993 0.85598 1.07690
1.98299 1.77448 1.33455 1.97205 1.19661 0.96495 0.90960 1.02045
1.20845 0.91105 1.02429 1.02736 1.20360 0.93610 0.95305 0.91929
1.17628 0.95540 0.86295 0.92229 0.93509 1.21002 1.22615 1.00722
1.11065 0.92396 1.24931 0.94900 0.97628 0.95972 1.70012 1.26114
1.18534 1.36302 0.86669 0.79221 0.79645 0.82919 1.20756 1.21302
1.19946 1.22183 0.97761 0.99821 0.90149 1.23078 1.06558 0.97227
0.99536 1.22443 0.97103 0.95045 1.02730 1.21061 0.94225 0.97107
0.99213 0.91603 0.92120 0.91489 0.86299 0.91161 0.92071 0.90564
0.93085 0.89968 0.90427 0.91111 0.89629 0.91156 0.85445
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.37 10.01 36.00 0.36 -1.01 16
2 C -0.09 -1.50 5.88 -104.63 -0.62 -2.11 16
3 C -0.14 -2.19 9.49 -39.55 -0.38 -2.57 16
4 C -0.03 -0.58 6.31 -39.50 -0.25 -0.83 16
5 Cl -0.09 -1.40 27.21 -51.86 -1.41 -2.82 16
6 C -0.09 -1.73 5.88 -104.59 -0.62 -2.34 16
7 C -0.11 -2.02 8.84 36.01 0.32 -1.70 16
8 C -0.01 -0.24 4.40 -104.63 -0.46 -0.70 16
9 C 0.10 2.34 1.83 -92.92 -0.17 2.17 16
10 H 0.05 1.16 5.48 -51.93 -0.28 0.88 16
11 C -0.52 -13.26 8.07 -34.44 -0.28 -13.54 16
12 H 0.06 1.50 7.44 -52.49 -0.39 1.11 16
13 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16
14 N -0.87 -23.25 11.44 55.43 0.63 -22.62 16
15 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16
16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16
19 C -0.08 -1.78 3.99 -90.58 -0.36 -2.14 16
20 C -0.23 -4.41 9.87 -26.73 -0.26 -4.67 16
21 C -0.14 -2.88 9.06 -26.69 -0.24 -3.12 16
22 C -0.10 -1.87 8.42 -39.57 -0.33 -2.21 16
23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
24 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16
25 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16
26 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16
27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
28 H 0.06 0.96 6.69 -51.93 -0.35 0.61 16
29 H 0.08 1.40 6.47 -51.93 -0.34 1.06 16
30 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16
31 H 0.08 1.92 8.11 -51.93 -0.42 1.50 16
32 H 0.08 1.49 8.08 -51.93 -0.42 1.07 16
33 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16
34 H 0.09 1.90 8.05 -51.93 -0.42 1.48 16
35 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16
36 H 0.13 2.46 7.91 -52.49 -0.42 2.05 16
LS Contribution 310.19 15.07 4.67 4.67
Total: -1.00 -25.96 310.19 -9.62 -35.58
By element:
Atomic # 1 Polarization: 7.88 SS G_CDS: -5.12 Total: 2.76 kcal
Atomic # 6 Polarization: -29.69 SS G_CDS: -3.38 Total: -33.07 kcal
Atomic # 7 Polarization: -23.25 SS G_CDS: 0.63 Total: -22.62 kcal
Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal
Atomic # 17 Polarization: -1.40 SS G_CDS: -1.41 Total: -2.82 kcal
Total LS contribution 4.67 Total: 4.67 kcal
Total: -25.96 -9.62 -35.58 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260116152.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.576 kcal
(2) G-P(sol) polarization free energy of solvation -25.961 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.615 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.584 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.992 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds