Wall clock time and date at job start Mon Mar 30 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 119.99183 * 2 1 4 4 C 1.38336 * 119.98777 * 179.97438 * 3 2 1 5 5 Cl 1.73604 * 120.01252 * 180.02562 * 4 3 2 6 6 C 1.38372 * 119.97383 * 0.02562 * 4 3 2 7 7 C 1.50693 * 120.00828 * 179.97438 * 6 4 3 8 8 C 1.38199 * 119.98413 * 359.97438 * 6 4 3 9 9 C 1.50699 * 119.98946 * 179.97438 * 8 6 4 10 10 H 1.08997 * 109.47247 * 354.69700 * 9 8 6 11 11 C 1.50696 * 109.47398 * 114.70432 * 9 8 6 12 12 H 1.08007 * 119.99778 * 359.97438 * 11 9 8 13 13 C 1.37880 * 120.00194 * 179.97438 * 11 9 8 14 14 N 1.31510 * 119.99719 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00013 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46923 * 60.00221 * 15 13 11 17 17 H 1.48499 * 109.47070 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47015 * 300.00154 * 15 13 11 19 19 C 1.53011 * 109.46694 * 234.70011 * 9 8 6 20 20 C 1.52998 * 117.49581 * 128.62157 * 19 9 8 21 21 C 1.53001 * 117.49439 * 60.00111 * 19 9 8 22 22 C 1.38221 * 119.99597 * 180.25607 * 2 1 3 23 23 H 1.09004 * 109.46563 * 90.00123 * 1 2 3 24 24 H 1.08996 * 109.46761 * 209.99711 * 1 2 3 25 25 H 1.08994 * 109.47507 * 329.99780 * 1 2 3 26 26 H 1.08001 * 120.00746 * 0.02632 * 3 2 1 27 27 H 1.09005 * 109.47490 * 264.41271 * 7 6 4 28 28 H 1.08997 * 109.47294 * 24.40786 * 7 6 4 29 29 H 1.09002 * 109.47372 * 144.41129 * 7 6 4 30 30 H 0.97005 * 120.00376 * 359.97438 * 14 13 11 31 31 H 1.08994 * 115.54896 * 274.33354 * 19 9 8 32 32 H 1.09002 * 117.49955 * 359.97438 * 20 19 9 33 33 H 1.09003 * 117.49936 * 145.02398 * 20 19 9 34 34 H 1.09003 * 117.49767 * 214.97834 * 21 19 9 35 35 H 1.09000 * 117.50335 * 359.97438 * 21 19 9 36 36 H 1.07995 * 119.98602 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5813 1.1972 0.0005 5 17 4.4498 2.7004 0.0012 6 6 4.2726 -0.0015 0.0005 7 6 5.7795 -0.0026 0.0005 8 6 3.5806 -1.1978 0.0005 9 6 4.3333 -2.5034 0.0000 10 1 5.4012 -2.3071 -0.0954 11 6 4.0703 -3.2355 1.2906 12 1 3.4231 -2.7988 2.0369 13 6 4.6558 -4.4628 1.5188 14 7 5.4442 -4.9942 0.6102 15 14 4.3304 -5.3699 3.1189 16 1 2.8754 -5.6367 3.2495 17 1 5.0720 -6.6564 3.1183 18 1 4.7855 -4.5373 4.2613 19 6 3.8653 -3.3613 -1.1775 20 6 4.9391 -3.9354 -2.1039 21 6 4.0473 -2.7890 -2.5847 22 6 2.1980 -1.1971 -0.0054 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5138 26 1 1.6580 2.1326 0.0004 27 1 6.1429 -0.1029 -1.0223 28 1 6.1435 0.9330 0.4252 29 1 6.1423 -0.8385 0.5986 30 1 5.6135 -4.5230 -0.2206 31 1 2.9811 -3.9711 -0.9926 32 1 5.9788 -3.7017 -1.8748 33 1 4.7614 -4.9235 -2.5286 34 1 3.2828 -3.0227 -3.3258 35 1 4.4999 -1.8012 -2.6718 36 1 1.6577 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260116160.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:57 Heat of formation + Delta-G solvation = 18.657897 kcal Electronic energy + Delta-G solvation = -18040.307816 eV Core-core repulsion = 15322.026663 eV Total energy + Delta-G solvation = -2718.281153 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.47331 -37.01420 -36.08354 -33.61641 -32.65468 -30.86743 -28.97978 -27.02743 -24.46740 -23.42520 -22.00002 -21.62226 -20.10331 -19.03465 -16.88266 -15.78342 -15.44236 -14.81550 -14.42994 -13.93995 -13.77526 -13.30897 -13.07991 -12.92300 -12.52013 -12.43914 -12.12744 -11.90666 -11.60586 -11.35109 -11.05429 -10.86651 -10.82866 -10.63677 -10.41903 -10.22457 -10.11486 -9.98742 -9.57100 -9.13581 -8.63331 -8.33274 -8.01766 -7.82062 -6.29549 -4.09730 1.70200 1.85002 2.49947 3.42981 3.43949 3.62616 4.14107 4.52706 4.72354 5.13747 5.25174 5.32682 5.42325 5.59600 5.68287 5.72020 5.79053 5.80170 5.92355 5.97964 6.08485 6.13882 6.18634 6.19948 6.29694 6.50464 6.59544 6.65151 6.71974 6.80714 6.85993 6.96337 7.04770 7.20479 7.44737 7.60869 8.13529 8.43124 8.89679 9.63628 11.06874 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.018035 B = 0.006823 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.160109 B = 4103.058124 C = 4200.208746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.089 4.089 3 C -0.135 4.135 4 C -0.032 4.032 5 Cl -0.091 7.091 6 C -0.091 4.091 7 C -0.117 4.117 8 C -0.006 4.006 9 C 0.089 3.911 10 H 0.037 0.963 11 C -0.595 4.595 12 H 0.051 0.949 13 C 0.027 3.973 14 N -0.911 5.911 15 Si 1.062 2.938 16 H -0.289 1.289 17 H -0.283 1.283 18 H -0.289 1.289 19 C -0.106 4.106 20 C -0.168 4.168 21 C -0.208 4.208 22 C -0.099 4.099 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.120 0.880 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.285 0.715 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 9.379 -3.181 11.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.090 4.090 3 C -0.153 4.153 4 C -0.058 4.058 5 Cl -0.062 7.062 6 C -0.092 4.092 7 C -0.173 4.173 8 C -0.006 4.006 9 C 0.071 3.929 10 H 0.055 0.945 11 C -0.633 4.633 12 H 0.069 0.931 13 C -0.179 4.179 14 N -0.548 5.548 15 Si 0.891 3.109 16 H -0.215 1.215 17 H -0.208 1.208 18 H -0.215 1.215 19 C -0.125 4.125 20 C -0.205 4.205 21 C -0.245 4.245 22 C -0.117 4.117 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.138 0.862 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.540 8.123 -2.354 9.599 hybrid contribution -0.349 1.533 -0.850 1.787 sum -4.888 9.656 -3.204 11.287 Atomic orbital electron populations 1.20713 0.91333 1.02460 1.01891 1.19757 0.95742 0.92634 1.00819 1.20595 0.91637 0.97981 1.05134 1.20676 0.92012 0.85651 1.07504 1.98302 1.77421 1.33281 1.97185 1.19635 0.96524 0.90940 1.02106 1.20853 0.91099 1.03144 1.02230 1.20113 0.93508 0.94832 0.92147 1.17775 0.94435 0.87003 0.93734 0.94526 1.21810 1.33753 1.06262 1.01480 0.93093 1.25673 0.93664 0.95157 1.03400 1.70747 1.33638 1.41383 1.09063 0.83638 0.76100 0.76300 0.74860 1.21522 1.20838 1.21515 1.22665 0.99484 1.00883 0.89422 1.22765 0.96501 0.96550 1.04710 1.23006 1.03765 0.97872 0.99841 1.20993 0.94077 0.97120 0.99472 0.91565 0.91457 0.92007 0.86159 0.91711 0.91802 0.90017 0.90107 0.89092 0.89482 0.90002 0.90459 0.90124 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 36.00 0.36 -0.99 16 2 C -0.09 -1.46 5.88 -104.63 -0.62 -2.08 16 3 C -0.13 -2.18 9.49 -39.55 -0.38 -2.55 16 4 C -0.03 -0.56 6.31 -39.50 -0.25 -0.81 16 5 Cl -0.09 -1.37 27.20 -51.86 -1.41 -2.78 16 6 C -0.09 -1.76 5.88 -104.59 -0.62 -2.37 16 7 C -0.12 -2.09 8.84 36.00 0.32 -1.77 16 8 C -0.01 -0.12 4.38 -104.63 -0.46 -0.58 16 9 C 0.09 2.07 1.59 -92.92 -0.15 1.92 16 10 H 0.04 0.91 5.33 -51.93 -0.28 0.63 16 11 C -0.60 -15.71 8.30 -34.44 -0.29 -15.99 16 12 H 0.05 1.37 7.73 -52.48 -0.41 0.97 16 13 C 0.03 0.74 5.30 -17.82 -0.09 0.65 16 14 N -0.91 -25.78 13.38 55.43 0.74 -25.04 16 15 Si 1.06 24.40 29.90 -169.99 -5.08 19.31 16 16 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 19 C -0.11 -2.31 3.63 -90.61 -0.33 -2.64 16 20 C -0.17 -3.45 8.14 -26.73 -0.22 -3.66 16 21 C -0.21 -3.90 9.87 -26.73 -0.26 -4.16 16 22 C -0.10 -1.89 8.63 -39.58 -0.34 -2.23 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 25 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 26 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.03 6.68 -51.93 -0.35 0.68 16 29 H 0.08 1.60 6.53 -51.93 -0.34 1.26 16 30 H 0.28 7.68 3.57 -40.82 -0.15 7.54 16 31 H 0.09 2.11 8.11 -51.93 -0.42 1.69 16 32 H 0.09 1.84 7.43 -51.93 -0.39 1.45 16 33 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.13 2.42 7.91 -52.49 -0.42 2.00 16 LS Contribution 306.27 15.07 4.62 4.62 Total: -1.00 -27.70 306.27 -9.36 -37.05 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.91 Total: 4.12 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: -3.31 Total: -37.28 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.74 Total: -25.04 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.08 Total: 19.31 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.41 Total: -2.78 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.70 -9.36 -37.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116160.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.713 kcal (2) G-P(sol) polarization free energy of solvation -27.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds