Wall clock time and date at job start Mon Mar 30 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 119.99183 * 2 1 4 4 C 1.38336 * 119.98777 * 179.97438 * 3 2 1 5 5 Cl 1.73604 * 120.01252 * 180.02562 * 4 3 2 6 6 C 1.38372 * 119.97383 * 0.02562 * 4 3 2 7 7 C 1.50693 * 120.00828 * 179.97438 * 6 4 3 8 8 C 1.38199 * 119.98413 * 359.97438 * 6 4 3 9 9 C 1.50699 * 119.98946 * 179.97438 * 8 6 4 10 10 H 1.08997 * 109.47247 * 354.69700 * 9 8 6 11 11 C 1.50696 * 109.47398 * 114.70432 * 9 8 6 12 12 H 1.08007 * 119.99778 * 359.97438 * 11 9 8 13 13 C 1.37880 * 120.00194 * 179.97438 * 11 9 8 14 14 N 1.31510 * 119.99719 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00013 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46923 * 60.00221 * 15 13 11 17 17 H 1.48499 * 109.47070 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47015 * 300.00154 * 15 13 11 19 19 C 1.53011 * 109.46694 * 234.70011 * 9 8 6 20 20 C 1.52998 * 117.49581 * 128.62157 * 19 9 8 21 21 C 1.53001 * 117.49439 * 60.00111 * 19 9 8 22 22 C 1.38221 * 119.99597 * 180.25607 * 2 1 3 23 23 H 1.09004 * 109.46563 * 90.00123 * 1 2 3 24 24 H 1.08996 * 109.46761 * 209.99711 * 1 2 3 25 25 H 1.08994 * 109.47507 * 329.99780 * 1 2 3 26 26 H 1.08001 * 120.00746 * 0.02632 * 3 2 1 27 27 H 1.09005 * 109.47490 * 264.41271 * 7 6 4 28 28 H 1.08997 * 109.47294 * 24.40786 * 7 6 4 29 29 H 1.09002 * 109.47372 * 144.41129 * 7 6 4 30 30 H 0.97005 * 120.00376 * 359.97438 * 14 13 11 31 31 H 1.08994 * 115.54896 * 274.33354 * 19 9 8 32 32 H 1.09002 * 117.49955 * 359.97438 * 20 19 9 33 33 H 1.09003 * 117.49936 * 145.02398 * 20 19 9 34 34 H 1.09003 * 117.49767 * 214.97834 * 21 19 9 35 35 H 1.09000 * 117.50335 * 359.97438 * 21 19 9 36 36 H 1.07995 * 119.98602 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5813 1.1972 0.0005 5 17 4.4498 2.7004 0.0012 6 6 4.2726 -0.0015 0.0005 7 6 5.7795 -0.0026 0.0005 8 6 3.5806 -1.1978 0.0005 9 6 4.3333 -2.5034 0.0000 10 1 5.4012 -2.3071 -0.0954 11 6 4.0703 -3.2355 1.2906 12 1 3.4231 -2.7988 2.0369 13 6 4.6558 -4.4628 1.5188 14 7 5.4442 -4.9942 0.6102 15 14 4.3304 -5.3699 3.1189 16 1 2.8754 -5.6367 3.2495 17 1 5.0720 -6.6564 3.1183 18 1 4.7855 -4.5373 4.2613 19 6 3.8653 -3.3613 -1.1775 20 6 4.9391 -3.9354 -2.1039 21 6 4.0473 -2.7890 -2.5847 22 6 2.1980 -1.1971 -0.0054 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5138 26 1 1.6580 2.1326 0.0004 27 1 6.1429 -0.1029 -1.0223 28 1 6.1435 0.9330 0.4252 29 1 6.1423 -0.8385 0.5986 30 1 5.6135 -4.5230 -0.2206 31 1 2.9811 -3.9711 -0.9926 32 1 5.9788 -3.7017 -1.8748 33 1 4.7614 -4.9235 -2.5286 34 1 3.2828 -3.0227 -3.3258 35 1 4.4999 -1.8012 -2.6718 36 1 1.6577 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260116160.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:57 Heat of formation + Delta-G solvation = 7.530113 kcal Electronic energy + Delta-G solvation = -18040.790353 eV Core-core repulsion = 15322.026663 eV Total energy + Delta-G solvation = -2718.763690 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.92888 -38.62341 -37.38525 -35.06825 -34.49166 -32.42740 -30.23265 -28.72997 -25.78963 -25.31490 -23.51625 -23.24522 -21.57884 -20.67517 -18.80029 -17.19724 -16.86055 -16.37186 -15.94013 -15.62922 -15.38250 -14.89634 -14.62288 -14.12650 -14.02697 -13.75353 -13.66203 -13.21815 -13.01235 -12.76824 -12.68199 -12.52793 -12.43061 -12.05132 -11.98288 -11.78676 -11.75632 -11.57627 -11.33188 -10.82229 -10.51575 -10.27925 -9.43383 -9.27104 -8.40640 -6.21824 0.30543 0.45402 1.17786 1.54749 1.60600 1.79947 2.59245 2.75973 3.07513 3.28301 3.86565 3.91388 4.01765 4.12517 4.23215 4.24921 4.29951 4.42818 4.60832 4.66817 4.71312 4.74401 4.77706 4.86095 4.91678 5.05031 5.07500 5.11308 5.25822 5.27745 5.34060 5.38172 5.49151 5.64436 5.90820 6.03569 6.18395 6.34489 6.82701 7.57967 8.97502 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.018035 B = 0.006823 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.160109 B = 4103.058124 C = 4200.208746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.082 4.082 3 C -0.129 4.129 4 C -0.035 4.035 5 Cl -0.069 7.069 6 C -0.111 4.111 7 C -0.110 4.110 8 C -0.031 4.031 9 C 0.093 3.907 10 H 0.015 0.985 11 C -0.602 4.602 12 H 0.037 0.963 13 C -0.018 4.018 14 N -0.940 5.940 15 Si 1.101 2.899 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.279 1.279 19 C -0.123 4.123 20 C -0.173 4.173 21 C -0.172 4.172 22 C -0.115 4.115 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.152 0.848 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.283 0.717 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.555 11.246 -3.538 13.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.082 4.082 3 C -0.147 4.147 4 C -0.062 4.062 5 Cl -0.040 7.040 6 C -0.111 4.111 7 C -0.166 4.166 8 C -0.031 4.031 9 C 0.074 3.926 10 H 0.033 0.967 11 C -0.640 4.640 12 H 0.055 0.945 13 C -0.219 4.219 14 N -0.579 5.579 15 Si 0.925 3.075 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.205 1.205 19 C -0.142 4.142 20 C -0.210 4.210 21 C -0.209 4.209 22 C -0.133 4.133 23 H 0.102 0.898 24 H 0.086 0.914 25 H 0.103 0.897 26 H 0.170 0.830 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.111 10.010 -2.718 12.038 hybrid contribution 0.120 1.065 -0.753 1.309 sum -5.991 11.074 -3.471 13.060 Atomic orbital electron populations 1.20796 0.88354 1.03663 1.03398 1.20132 0.97825 0.91560 0.98704 1.20986 0.91234 0.99130 1.03361 1.20793 0.92776 0.85932 1.06695 1.98307 1.77136 1.31527 1.97040 1.19731 0.96942 0.91355 1.03105 1.20774 0.90864 1.02689 1.02301 1.19960 0.94274 0.94200 0.94656 1.17561 0.93547 0.88512 0.92949 0.96704 1.22090 1.32871 1.06462 1.02618 0.94494 1.26812 0.93334 0.96268 1.05481 1.70806 1.35178 1.42105 1.09804 0.83120 0.76723 0.75309 0.72298 1.20007 1.21125 1.20465 1.22377 0.99305 1.01786 0.90736 1.22730 0.95784 0.97675 1.04800 1.22996 1.02859 0.97237 0.97813 1.20999 0.93545 0.98007 1.00761 0.89761 0.91443 0.89672 0.83002 0.90963 0.90244 0.92769 0.90277 0.91000 0.90679 0.89457 0.87960 0.89680 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 10.01 71.24 0.71 -1.60 16 2 C -0.08 -2.50 5.88 -19.87 -0.12 -2.62 16 3 C -0.13 -3.76 9.49 22.29 0.21 -3.55 16 4 C -0.04 -1.16 6.31 22.33 0.14 -1.02 16 5 Cl -0.07 -1.91 27.20 -2.72 -0.07 -1.99 16 6 C -0.11 -4.21 5.88 -19.84 -0.12 -4.33 16 7 C -0.11 -3.96 8.84 71.23 0.63 -3.33 16 8 C -0.03 -1.29 4.38 -19.87 -0.09 -1.37 16 9 C 0.09 4.47 1.59 -12.28 -0.02 4.45 16 10 H 0.02 0.78 5.33 -2.39 -0.01 0.77 16 11 C -0.60 -32.92 8.30 25.60 0.21 -32.71 16 12 H 0.04 2.06 7.73 -2.91 -0.02 2.04 16 13 C -0.02 -0.98 5.30 84.66 0.45 -0.54 16 14 N -0.94 -54.81 13.38 21.45 0.29 -54.52 16 15 Si 1.10 49.99 29.90 68.60 2.05 52.04 16 16 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 17 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 19 C -0.12 -5.52 3.63 -10.79 -0.04 -5.56 16 20 C -0.17 -7.20 8.14 30.59 0.25 -6.95 16 21 C -0.17 -6.33 9.87 30.60 0.30 -6.03 16 22 C -0.11 -4.37 8.63 22.27 0.19 -4.17 16 23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.07 1.49 8.09 -2.39 -0.02 1.47 16 25 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 26 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 27 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 28 H 0.08 2.52 6.68 -2.39 -0.02 2.50 16 29 H 0.05 2.22 6.53 -2.39 -0.02 2.21 16 30 H 0.28 15.90 3.57 -92.70 -0.33 15.57 16 31 H 0.07 3.46 8.11 -2.39 -0.02 3.44 16 32 H 0.07 3.29 7.43 -2.39 -0.02 3.27 16 33 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 34 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 35 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.11 4.47 7.91 -2.91 -0.02 4.45 16 Total: -1.00 -60.60 306.27 6.49 -54.11 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 1.50 Total: 19.69 kcal Atomic # 6 Polarization: -72.05 SS G_CDS: 2.72 Total: -69.33 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.29 Total: -54.52 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.05 Total: 52.04 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.07 Total: -1.99 kcal Total: -60.60 6.49 -54.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116160.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.641 kcal (2) G-P(sol) polarization free energy of solvation -60.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds