Wall clock time and date at job start Mon Mar 30 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38263 * 119.98691 * 2 1 4 4 C 1.38192 * 120.01456 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00722 * 180.02562 * 4 3 2 6 6 C 1.38373 * 119.98652 * 359.97438 * 4 3 2 7 7 Cl 1.73599 * 120.01363 * 179.97438 * 6 4 3 8 8 C 1.38335 * 119.97289 * 359.97438 * 6 4 3 9 9 C 1.50697 * 120.00393 * 179.97438 * 8 6 4 10 10 H 1.09000 * 109.47374 * 0.02562 * 9 8 6 11 11 C 1.50699 * 109.46956 * 120.00414 * 9 8 6 12 12 H 1.08003 * 120.00271 * 359.97438 * 11 9 8 13 13 C 1.37879 * 120.00161 * 179.97438 * 11 9 8 14 14 N 1.31509 * 119.99895 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00268 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46809 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46948 * 120.00386 * 15 13 11 18 18 H 1.48497 * 109.47378 * 240.00673 * 15 13 11 19 19 C 1.53006 * 109.47239 * 240.00071 * 9 8 6 20 20 C 1.53001 * 117.49866 * 128.62372 * 19 9 8 21 21 C 1.53000 * 117.49497 * 59.99964 * 19 9 8 22 22 C 1.38220 * 119.98851 * 180.21612 * 2 1 3 23 23 H 1.09004 * 109.47780 * 89.99758 * 1 2 3 24 24 H 1.09007 * 109.47130 * 209.99412 * 1 2 3 25 25 H 1.09003 * 109.47362 * 329.99283 * 1 2 3 26 26 H 1.07997 * 119.98990 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.46510 * 269.97964 * 5 4 3 28 28 H 1.09003 * 109.47230 * 29.96999 * 5 4 3 29 29 H 1.08994 * 109.47094 * 149.97480 * 5 4 3 30 30 H 0.97006 * 120.00358 * 179.97438 * 14 13 11 31 31 H 1.08996 * 115.55031 * 274.33858 * 19 9 8 32 32 H 1.08996 * 117.49555 * 359.97438 * 20 19 9 33 33 H 1.08995 * 117.49577 * 145.02406 * 20 19 9 34 34 H 1.08998 * 117.49694 * 214.97781 * 21 19 9 35 35 H 1.08998 * 117.50118 * 359.97438 * 21 19 9 36 36 H 1.08003 * 119.99349 * 0.04211 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1975 0.0000 4 6 3.5799 1.1982 -0.0005 5 6 4.3330 2.5036 0.0000 6 6 4.2721 0.0000 -0.0005 7 17 6.0081 0.0001 -0.0019 8 6 3.5802 -1.1978 0.0005 9 6 4.3333 -2.5031 0.0000 10 1 5.4050 -2.3043 -0.0009 11 6 3.9703 -3.2930 1.2310 12 1 3.2651 -2.8899 1.9428 13 6 4.5384 -4.5303 1.4486 14 7 5.3974 -5.0209 0.5821 15 14 4.0890 -5.5091 2.9748 16 1 3.1089 -4.7415 3.7843 17 1 3.4896 -6.8066 2.5720 18 1 5.3110 -5.7574 3.7812 19 6 3.9620 -3.3056 -1.2487 20 6 5.1070 -3.8386 -2.1123 21 6 4.2536 -2.6700 -2.6095 22 6 2.1978 -1.1972 -0.0045 23 1 -0.3635 0.0000 -1.0277 24 1 -0.3634 -0.8901 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.6577 2.1326 -0.0004 27 1 4.5144 2.8187 -1.0275 28 1 3.7436 3.2628 0.5142 29 1 5.2854 2.3734 0.5138 30 1 5.7975 -5.8913 0.7353 31 1 3.0671 -3.9219 -1.1626 32 1 6.1247 -3.6171 -1.7911 33 1 4.9656 -4.8058 -2.5944 34 1 3.5509 -2.8685 -3.4187 35 1 4.7096 -1.6799 -2.6152 36 1 1.6575 -2.1323 -0.0087 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260182126.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:45 Heat of formation + Delta-G solvation = 19.994367 kcal Electronic energy + Delta-G solvation = -17988.263668 eV Core-core repulsion = 15270.040468 eV Total energy + Delta-G solvation = -2718.223199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.24347 -36.48222 -35.80661 -33.00851 -32.76241 -31.72348 -27.85080 -26.62396 -26.09830 -23.51808 -21.27400 -20.87619 -20.19992 -18.67579 -16.50180 -16.07462 -15.32154 -14.62389 -14.29859 -13.88632 -13.63485 -13.03402 -12.99368 -12.79230 -12.62283 -12.35163 -12.10914 -11.79720 -11.60558 -11.16227 -10.96309 -10.94755 -10.66182 -10.49858 -10.43254 -10.17777 -9.86986 -9.77417 -9.60688 -8.73316 -8.67636 -8.26035 -7.93985 -7.73830 -5.97654 -4.04202 1.77145 1.97442 2.90009 3.29716 3.38431 3.42317 4.21511 4.46407 5.09300 5.11867 5.25409 5.34185 5.42991 5.61025 5.63008 5.80230 5.86051 5.97352 5.99432 6.08576 6.12000 6.16028 6.28373 6.42964 6.49991 6.56450 6.68859 6.88505 6.96126 7.02475 7.11220 7.22591 7.29921 7.50544 7.56707 7.83114 8.01107 8.35617 8.97444 9.59129 11.08149 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.007933 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.589717 B = 3528.519208 C = 3887.724554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.089 4.089 3 C -0.138 4.138 4 C -0.083 4.083 5 C -0.112 4.112 6 C -0.050 4.050 7 Cl -0.077 7.077 8 C -0.009 4.009 9 C 0.095 3.905 10 H 0.056 0.944 11 C -0.513 4.513 12 H 0.057 0.943 13 C 0.069 3.931 14 N -0.872 5.872 15 Si 0.887 3.113 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.080 4.080 20 C -0.134 4.134 21 C -0.226 4.226 22 C -0.102 4.102 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.117 0.883 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.258 0.742 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.733 10.138 -3.082 11.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.089 4.089 3 C -0.157 4.157 4 C -0.084 4.084 5 C -0.169 4.169 6 C -0.076 4.076 7 Cl -0.048 7.048 8 C -0.009 4.009 9 C 0.077 3.923 10 H 0.073 0.927 11 C -0.551 4.551 12 H 0.075 0.925 13 C -0.134 4.134 14 N -0.509 5.509 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.099 4.099 20 C -0.172 4.172 21 C -0.264 4.264 22 C -0.120 4.120 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.135 0.865 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.453 9.979 -3.115 11.363 hybrid contribution -0.041 -0.745 0.811 1.102 sum -4.495 9.233 -2.304 10.524 Atomic orbital electron populations 1.20729 0.91703 1.02321 1.01805 1.19927 0.95730 0.93326 0.99898 1.20536 0.92431 0.97267 1.05429 1.19578 0.93702 0.93805 1.01268 1.20779 1.00215 0.93805 1.02109 1.20727 0.83855 0.94264 1.08792 1.98302 1.10965 1.98487 1.97028 1.20418 0.93757 0.95409 0.91354 1.17725 0.95914 0.85855 0.92803 0.92656 1.20990 1.26427 1.02077 1.05583 0.92476 1.24923 0.94927 0.97460 0.96111 1.70037 1.28283 1.17915 1.34647 0.86621 0.78316 0.80044 0.83550 1.19823 1.21133 1.21100 1.22150 0.98507 1.00041 0.89165 1.22415 0.96967 0.94859 1.02914 1.23053 1.05555 0.97849 0.99898 1.20877 0.93349 0.97244 1.00569 0.91617 0.91578 0.92129 0.86507 0.91446 0.91890 0.91181 0.93205 0.90037 0.89608 0.91200 0.91156 0.90521 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 36.00 0.36 -1.01 16 2 C -0.09 -1.45 5.88 -104.62 -0.62 -2.07 16 3 C -0.14 -2.16 9.36 -39.59 -0.37 -2.53 16 4 C -0.08 -1.39 5.88 -104.59 -0.62 -2.01 16 5 C -0.11 -1.51 9.62 36.01 0.35 -1.16 16 6 C -0.05 -0.98 6.31 -39.50 -0.25 -1.23 16 7 Cl -0.08 -1.47 25.35 -51.86 -1.31 -2.78 16 8 C -0.01 -0.18 4.39 -104.59 -0.46 -0.64 16 9 C 0.10 2.30 2.00 -92.92 -0.19 2.11 16 10 H 0.06 1.45 5.93 -51.93 -0.31 1.14 16 11 C -0.51 -13.60 8.23 -34.44 -0.28 -13.89 16 12 H 0.06 1.53 7.61 -52.48 -0.40 1.13 16 13 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 14 N -0.87 -23.89 11.44 55.43 0.63 -23.26 16 15 Si 0.89 20.97 29.54 -169.99 -5.02 15.94 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 C -0.08 -1.83 3.86 -90.62 -0.35 -2.18 16 20 C -0.13 -2.97 9.05 -26.73 -0.24 -3.21 16 21 C -0.23 -4.58 9.87 -26.73 -0.26 -4.85 16 22 C -0.10 -1.98 8.48 -39.59 -0.34 -2.32 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 0.82 8.09 -51.92 -0.42 0.40 16 25 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 26 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 29 H 0.07 0.96 6.90 -51.93 -0.36 0.60 16 30 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.08 1.95 8.11 -51.93 -0.42 1.53 16 32 H 0.09 2.02 8.05 -51.93 -0.42 1.60 16 33 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.13 2.50 8.05 -52.48 -0.42 2.07 16 LS Contribution 311.86 15.07 4.70 4.70 Total: -1.00 -27.38 311.86 -9.62 -37.00 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.26 Total: 1.63 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: -3.36 Total: -33.23 kcal Atomic # 7 Polarization: -23.89 SS G_CDS: 0.63 Total: -23.26 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -1.31 Total: -2.78 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.38 -9.62 -37.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260182126.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.995 kcal (2) G-P(sol) polarization free energy of solvation -27.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds