Wall clock time and date at job start Mon Mar 30 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38263 * 119.98691 * 2 1 4 4 C 1.38192 * 120.01456 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00722 * 180.02562 * 4 3 2 6 6 C 1.38373 * 119.98652 * 359.97438 * 4 3 2 7 7 Cl 1.73599 * 120.01363 * 179.97438 * 6 4 3 8 8 C 1.38335 * 119.97289 * 359.97438 * 6 4 3 9 9 C 1.50697 * 120.00393 * 179.97438 * 8 6 4 10 10 H 1.09000 * 109.47374 * 0.02562 * 9 8 6 11 11 C 1.50699 * 109.46956 * 120.00414 * 9 8 6 12 12 H 1.08003 * 120.00271 * 359.97438 * 11 9 8 13 13 C 1.37879 * 120.00161 * 179.97438 * 11 9 8 14 14 N 1.31509 * 119.99895 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00268 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46809 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46948 * 120.00386 * 15 13 11 18 18 H 1.48497 * 109.47378 * 240.00673 * 15 13 11 19 19 C 1.53006 * 109.47239 * 240.00071 * 9 8 6 20 20 C 1.53001 * 117.49866 * 128.62372 * 19 9 8 21 21 C 1.53000 * 117.49497 * 59.99964 * 19 9 8 22 22 C 1.38220 * 119.98851 * 180.21612 * 2 1 3 23 23 H 1.09004 * 109.47780 * 89.99758 * 1 2 3 24 24 H 1.09007 * 109.47130 * 209.99412 * 1 2 3 25 25 H 1.09003 * 109.47362 * 329.99283 * 1 2 3 26 26 H 1.07997 * 119.98990 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.46510 * 269.97964 * 5 4 3 28 28 H 1.09003 * 109.47230 * 29.96999 * 5 4 3 29 29 H 1.08994 * 109.47094 * 149.97480 * 5 4 3 30 30 H 0.97006 * 120.00358 * 179.97438 * 14 13 11 31 31 H 1.08996 * 115.55031 * 274.33858 * 19 9 8 32 32 H 1.08996 * 117.49555 * 359.97438 * 20 19 9 33 33 H 1.08995 * 117.49577 * 145.02406 * 20 19 9 34 34 H 1.08998 * 117.49694 * 214.97781 * 21 19 9 35 35 H 1.08998 * 117.50118 * 359.97438 * 21 19 9 36 36 H 1.08003 * 119.99349 * 0.04211 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1975 0.0000 4 6 3.5799 1.1982 -0.0005 5 6 4.3330 2.5036 0.0000 6 6 4.2721 0.0000 -0.0005 7 17 6.0081 0.0001 -0.0019 8 6 3.5802 -1.1978 0.0005 9 6 4.3333 -2.5031 0.0000 10 1 5.4050 -2.3043 -0.0009 11 6 3.9703 -3.2930 1.2310 12 1 3.2651 -2.8899 1.9428 13 6 4.5384 -4.5303 1.4486 14 7 5.3974 -5.0209 0.5821 15 14 4.0890 -5.5091 2.9748 16 1 3.1089 -4.7415 3.7843 17 1 3.4896 -6.8066 2.5720 18 1 5.3110 -5.7574 3.7812 19 6 3.9620 -3.3056 -1.2487 20 6 5.1070 -3.8386 -2.1123 21 6 4.2536 -2.6700 -2.6095 22 6 2.1978 -1.1972 -0.0045 23 1 -0.3635 0.0000 -1.0277 24 1 -0.3634 -0.8901 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.6577 2.1326 -0.0004 27 1 4.5144 2.8187 -1.0275 28 1 3.7436 3.2628 0.5142 29 1 5.2854 2.3734 0.5138 30 1 5.7975 -5.8913 0.7353 31 1 3.0671 -3.9219 -1.1626 32 1 6.1247 -3.6171 -1.7911 33 1 4.9656 -4.8058 -2.5944 34 1 3.5509 -2.8685 -3.4187 35 1 4.7096 -1.6799 -2.6152 36 1 1.6575 -2.1323 -0.0087 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260182126.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:45 Heat of formation + Delta-G solvation = 8.845505 kcal Electronic energy + Delta-G solvation = -17988.747119 eV Core-core repulsion = 15270.040468 eV Total energy + Delta-G solvation = -2718.706650 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.65401 -38.18524 -37.25072 -34.75558 -34.11244 -33.35675 -29.45337 -27.90272 -27.36187 -25.41081 -22.97074 -22.47196 -21.50027 -20.40464 -18.43395 -17.47212 -16.75012 -16.55302 -16.00886 -15.16576 -15.10723 -14.58816 -14.30248 -14.10268 -13.99946 -13.78295 -13.44136 -13.13515 -12.93258 -12.86939 -12.71780 -12.40373 -12.29697 -12.18320 -11.96743 -11.74172 -11.59305 -11.57073 -11.27634 -10.62179 -10.50131 -10.15143 -9.33029 -9.16254 -8.02101 -6.14065 0.40295 0.59441 1.39182 1.42691 1.45885 1.52239 2.45257 2.86004 3.24268 3.37280 3.95198 4.00479 4.14111 4.26715 4.47482 4.48501 4.51837 4.59086 4.74678 4.83709 4.87849 4.89645 4.92189 4.95462 5.10345 5.17537 5.27976 5.31459 5.38974 5.48921 5.51092 5.60614 5.65828 5.79783 5.84740 6.10377 6.17337 6.39837 6.92566 7.50911 9.02000 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.007933 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.589717 B = 3528.519208 C = 3887.724554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.082 4.082 3 C -0.131 4.131 4 C -0.082 4.082 5 C -0.111 4.111 6 C -0.073 4.073 7 Cl -0.085 7.085 8 C -0.037 4.037 9 C 0.100 3.900 10 H 0.028 0.972 11 C -0.524 4.524 12 H 0.045 0.955 13 C 0.025 3.975 14 N -0.894 5.894 15 Si 0.942 3.058 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.285 1.285 19 C -0.093 4.093 20 C -0.140 4.140 21 C -0.192 4.192 22 C -0.123 4.123 23 H 0.082 0.918 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.158 0.842 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.257 0.743 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.517 12.210 -3.315 14.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.083 4.083 3 C -0.149 4.149 4 C -0.082 4.082 5 C -0.167 4.167 6 C -0.099 4.099 7 Cl -0.056 7.056 8 C -0.038 4.038 9 C 0.082 3.918 10 H 0.046 0.954 11 C -0.562 4.562 12 H 0.063 0.937 13 C -0.176 4.176 14 N -0.531 5.531 15 Si 0.769 3.231 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.211 1.211 19 C -0.112 4.112 20 C -0.177 4.177 21 C -0.229 4.229 22 C -0.141 4.141 23 H 0.101 0.899 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.175 0.825 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.242 12.056 -3.347 13.983 hybrid contribution 0.473 -1.315 0.883 1.653 sum -5.768 10.741 -2.465 12.439 Atomic orbital electron populations 1.20804 0.88791 1.03524 1.03227 1.20326 0.97823 0.92388 0.97726 1.21017 0.92019 0.98534 1.03351 1.20033 0.94583 0.94093 0.99524 1.20849 0.99898 0.92622 1.03344 1.20920 0.83656 0.94966 1.10393 1.98287 1.11668 1.98519 1.97162 1.20246 0.94624 0.94720 0.94164 1.17471 0.94666 0.87411 0.92251 0.95365 1.21241 1.25953 1.02589 1.06460 0.93694 1.25561 0.95078 0.98391 0.98527 1.70144 1.29028 1.18064 1.35900 0.85750 0.77896 0.78807 0.80642 1.19664 1.20643 1.21090 1.21952 0.98063 1.00842 0.90352 1.22320 0.95851 0.96062 1.03475 1.23006 1.04326 0.96911 0.98681 1.20860 0.92734 0.98221 1.02308 0.89932 0.91810 0.89548 0.82455 0.89974 0.89059 0.91962 0.93350 0.91651 0.91647 0.90619 0.88617 0.90528 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.33 10.01 71.24 0.71 -1.62 16 2 C -0.08 -2.50 5.88 -19.86 -0.12 -2.62 16 3 C -0.13 -3.61 9.36 22.26 0.21 -3.41 16 4 C -0.08 -2.55 5.88 -19.84 -0.12 -2.67 16 5 C -0.11 -2.62 9.62 71.24 0.68 -1.93 16 6 C -0.07 -2.85 6.31 22.33 0.14 -2.71 16 7 Cl -0.09 -3.31 25.35 -2.72 -0.07 -3.38 16 8 C -0.04 -1.60 4.39 -19.84 -0.09 -1.68 16 9 C 0.10 5.01 2.00 -12.29 -0.02 4.99 16 10 H 0.03 1.55 5.93 -2.39 -0.01 1.53 16 11 C -0.52 -28.80 8.23 25.60 0.21 -28.59 16 12 H 0.04 2.50 7.61 -2.91 -0.02 2.48 16 13 C 0.03 1.39 5.30 84.66 0.45 1.84 16 14 N -0.89 -50.44 11.44 21.45 0.25 -50.19 16 15 Si 0.94 43.92 29.54 68.60 2.03 45.95 16 16 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 18 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 19 C -0.09 -4.40 3.86 -10.79 -0.04 -4.45 16 20 C -0.14 -6.33 9.05 30.60 0.28 -6.05 16 21 C -0.19 -7.72 9.87 30.60 0.30 -7.42 16 22 C -0.12 -4.75 8.48 22.26 0.19 -4.57 16 23 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.06 1.43 8.09 -2.38 -0.02 1.41 16 25 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 26 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.09 1.65 8.09 -2.39 -0.02 1.63 16 29 H 0.06 1.58 6.90 -2.39 -0.02 1.56 16 30 H 0.26 13.96 8.31 -92.70 -0.77 13.19 16 31 H 0.07 3.25 8.11 -2.39 -0.02 3.23 16 32 H 0.06 3.21 8.05 -2.39 -0.02 3.19 16 33 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 35 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.11 4.58 8.05 -2.91 -0.02 4.56 16 Total: -1.00 -60.71 311.86 6.05 -54.66 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 1.06 Total: 13.84 kcal Atomic # 6 Polarization: -63.67 SS G_CDS: 2.79 Total: -60.88 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.25 Total: -50.19 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -3.31 SS G_CDS: -0.07 Total: -3.38 kcal Total: -60.71 6.05 -54.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260182126.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.509 kcal (2) G-P(sol) polarization free energy of solvation -60.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds