Wall clock time and date at job start Mon Mar 30 2020 06:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50704 * 109.47082 * 2 1 4 4 C 1.38264 * 119.98510 * 264.72778 * 3 2 1 5 5 C 1.38191 * 120.01283 * 179.72545 * 4 3 2 6 6 C 1.38372 * 119.98439 * 0.54428 * 5 4 3 7 7 Cl 1.73602 * 120.01030 * 179.74807 * 6 5 4 8 8 C 1.38330 * 119.97585 * 359.72796 * 6 5 4 9 9 C 1.38212 * 119.98844 * 84.99673 * 3 2 1 10 10 C 1.50703 * 119.99299 * 359.97438 * 9 3 2 11 11 H 1.08997 * 109.46998 * 0.02562 * 10 9 3 12 12 C 1.50697 * 109.47297 * 239.99628 * 10 9 3 13 13 H 1.08004 * 119.99895 * 305.36012 * 12 10 9 14 14 C 1.37880 * 119.99987 * 125.35429 * 12 10 9 15 15 N 1.31512 * 120.00017 * 5.28924 * 14 12 10 16 16 Si 1.86800 * 119.99788 * 185.28534 * 14 12 10 17 17 H 1.48499 * 109.46862 * 90.00550 * 16 14 12 18 18 H 1.48496 * 109.47170 * 210.00026 * 16 14 12 19 19 H 1.48495 * 109.47288 * 330.00288 * 16 14 12 20 20 C 1.53002 * 109.47281 * 119.99766 * 10 9 3 21 21 C 1.53000 * 117.49966 * 244.24947 * 20 10 9 22 22 C 1.52996 * 117.50171 * 175.58925 * 20 10 9 23 23 H 1.08998 * 109.46781 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47084 * 300.00104 * 1 2 3 25 25 H 1.08997 * 109.46987 * 60.00048 * 1 2 3 26 26 H 1.08997 * 109.46987 * 119.99952 * 2 1 3 27 27 H 1.09001 * 109.47084 * 239.99896 * 2 1 3 28 28 H 1.08005 * 119.99158 * 0.02562 * 4 3 2 29 29 H 1.08004 * 120.00910 * 180.25222 * 5 4 3 30 30 H 1.07999 * 120.00841 * 180.02562 * 8 6 5 31 31 H 0.96994 * 119.99881 * 179.97438 * 15 14 12 32 32 H 1.09004 * 115.54874 * 29.91156 * 20 10 9 33 33 H 1.08996 * 117.49697 * 359.97438 * 21 20 10 34 34 H 1.09003 * 117.50077 * 145.01713 * 21 20 10 35 35 H 1.09005 * 117.49703 * 214.98308 * 22 20 10 36 36 H 1.09003 * 117.49925 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3665 2.0357 -1.1925 5 6 2.8218 3.3404 -1.1937 6 6 2.9540 4.0278 -0.0001 7 17 3.5321 5.6647 -0.0003 8 6 2.6249 3.4103 1.1932 9 6 2.1642 2.1070 1.1925 10 6 1.8051 1.4343 2.4924 11 1 1.4644 0.4182 2.2936 12 6 0.7059 2.2093 3.1722 13 1 0.8311 3.2638 3.3695 14 6 -0.4596 1.5723 3.5422 15 7 -0.5717 0.2700 3.3971 16 14 -1.8792 2.5590 4.2496 17 1 -2.7674 3.0082 3.1475 18 1 -2.6509 1.7101 5.1923 19 1 -1.3479 3.7432 4.9711 20 6 3.0353 1.3905 3.4010 21 6 3.5984 0.0144 3.7620 22 6 2.8501 0.8358 4.8148 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 2.2670 1.4977 -2.1237 29 1 3.0789 3.8220 -2.1256 30 1 2.7275 3.9465 2.1251 31 1 -1.3915 -0.1781 3.6578 32 1 3.7461 2.2064 3.2695 33 1 3.0921 -0.8596 3.3525 34 1 4.6795 -0.0749 3.8684 35 1 3.4392 1.2866 5.6135 36 1 1.8516 0.5024 5.0978 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260359814.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:59 Heat of formation + Delta-G solvation = 19.338346 kcal Electronic energy + Delta-G solvation = -18117.234043 eV Core-core repulsion = 15398.982397 eV Total energy + Delta-G solvation = -2718.251646 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.21718 -36.60151 -35.94817 -33.40786 -32.71670 -31.14012 -28.65059 -27.03948 -23.85659 -23.10531 -21.74133 -21.31819 -19.94443 -18.99700 -16.51644 -16.24578 -15.10188 -14.71872 -14.57853 -14.15207 -13.48240 -13.06787 -12.95991 -12.81671 -12.48001 -12.27744 -11.71212 -11.48488 -11.29001 -11.11211 -10.87087 -10.70472 -10.56062 -10.48134 -10.36278 -10.24828 -10.01671 -9.92960 -9.46807 -8.98201 -8.61189 -8.52822 -8.10157 -7.70948 -6.11684 -4.12501 1.82818 2.02935 2.63452 3.26178 3.33673 3.37483 4.28026 4.40322 4.91746 5.21603 5.33545 5.46937 5.56417 5.75521 5.80111 5.98476 6.06786 6.12708 6.16001 6.23122 6.27079 6.42040 6.47259 6.57282 6.59908 6.70383 6.84167 6.87149 6.93261 7.05714 7.13055 7.23726 7.32061 7.51532 7.61433 7.76850 7.87261 8.28763 8.94996 9.48749 10.94948 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.015150 B = 0.007740 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.708652 B = 3616.649591 C = 3761.561104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.076 4.076 3 C -0.085 4.085 4 C -0.112 4.112 5 C -0.140 4.140 6 C -0.040 4.040 7 Cl -0.099 7.099 8 C -0.105 4.105 9 C -0.011 4.011 10 C 0.078 3.922 11 H 0.096 0.904 12 C -0.494 4.494 13 H 0.055 0.945 14 C 0.071 3.929 15 N -0.885 5.885 16 Si 0.886 3.114 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.122 4.122 21 C -0.201 4.201 22 C -0.163 4.163 23 H 0.045 0.955 24 H 0.094 0.906 25 H 0.036 0.964 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.262 0.738 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.394 1.255 -5.791 8.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.085 4.085 4 C -0.130 4.130 5 C -0.159 4.159 6 C -0.066 4.066 7 Cl -0.070 7.070 8 C -0.124 4.124 9 C -0.011 4.011 10 C 0.060 3.940 11 H 0.114 0.886 12 C -0.532 4.532 13 H 0.073 0.927 14 C -0.131 4.131 15 N -0.522 5.522 16 Si 0.714 3.286 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.141 4.141 21 C -0.238 4.238 22 C -0.200 4.200 23 H 0.064 0.936 24 H 0.112 0.888 25 H 0.055 0.945 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.144 0.856 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.302 1.243 -5.749 7.919 hybrid contribution -0.753 0.855 0.342 1.190 sum 4.549 2.098 -5.407 7.371 Atomic orbital electron populations 1.21805 0.94319 1.01208 1.03233 1.20457 0.96871 0.92307 1.01651 1.19939 0.99155 0.96838 0.92578 1.20832 1.00461 0.94177 0.97580 1.20688 1.04047 0.95088 0.96078 1.20886 1.04673 0.85395 0.95659 1.98310 1.87827 1.21884 1.99012 1.20906 1.00024 0.95364 0.96088 1.20578 0.90896 0.92534 0.97137 1.17991 0.90610 0.99508 0.85872 0.88639 1.20901 0.99332 0.95489 1.37490 0.92697 1.24884 0.98218 0.94840 0.95194 1.69860 1.27125 1.07408 1.47825 0.86684 0.82664 0.80269 0.79016 1.20655 1.21284 1.19859 1.22592 0.99589 0.93843 0.98043 1.22976 0.97807 0.96446 1.06603 1.22698 1.01466 1.03866 0.91963 0.93588 0.88762 0.94504 0.90259 0.92889 0.86398 0.86375 0.85556 0.92765 0.90517 0.89537 0.91069 0.91249 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.77 37.16 0.36 -2.41 16 2 C -0.08 -1.35 5.36 -27.88 -0.15 -1.50 16 3 C -0.08 -1.60 5.13 -104.62 -0.54 -2.14 16 4 C -0.11 -1.87 9.68 -39.59 -0.38 -2.25 16 5 C -0.14 -2.31 9.83 -39.55 -0.39 -2.70 16 6 C -0.04 -0.71 6.32 -39.50 -0.25 -0.96 16 7 Cl -0.10 -1.57 28.96 -51.86 -1.50 -3.07 16 8 C -0.11 -2.07 8.31 -39.55 -0.33 -2.40 16 9 C -0.01 -0.22 4.77 -104.63 -0.50 -0.72 16 10 C 0.08 1.75 2.04 -92.92 -0.19 1.56 16 11 H 0.10 2.27 3.78 -51.93 -0.20 2.07 16 12 C -0.49 -12.28 7.41 -34.44 -0.26 -12.53 16 13 H 0.05 1.41 7.64 -52.48 -0.40 1.00 16 14 C 0.07 1.78 5.33 -17.82 -0.09 1.69 16 15 N -0.88 -22.51 11.72 55.43 0.65 -21.86 16 16 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 20 C -0.12 -2.52 5.09 -90.62 -0.46 -2.98 16 21 C -0.20 -3.79 10.18 -26.70 -0.27 -4.06 16 22 C -0.16 -3.29 9.79 -26.70 -0.26 -3.55 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.09 2.11 6.63 -51.93 -0.34 1.77 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.51 6.39 -51.93 -0.33 1.18 16 27 H 0.05 0.80 8.05 -51.93 -0.42 0.38 16 28 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 29 H 0.12 1.66 8.06 -52.48 -0.42 1.23 16 30 H 0.13 2.52 7.80 -52.49 -0.41 2.11 16 31 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 32 H 0.08 1.54 7.40 -51.93 -0.38 1.15 16 33 H 0.09 1.67 8.03 -51.93 -0.42 1.26 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.10 2.35 8.03 -51.93 -0.42 1.94 16 LS Contribution 311.29 15.07 4.69 4.69 Total: -1.00 -24.54 311.29 -9.88 -34.42 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.99 Total: 5.51 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: -3.71 Total: -34.96 kcal Atomic # 7 Polarization: -22.51 SS G_CDS: 0.65 Total: -21.86 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -1.50 Total: -3.07 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -24.54 -9.88 -34.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260359814.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.762 kcal (2) G-P(sol) polarization free energy of solvation -24.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds