Wall clock time and date at job start Mon Mar 30 2020 06:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50704 * 109.47082 * 2 1 4 4 C 1.38264 * 119.98510 * 264.72778 * 3 2 1 5 5 C 1.38191 * 120.01283 * 179.72545 * 4 3 2 6 6 C 1.38372 * 119.98439 * 0.54428 * 5 4 3 7 7 Cl 1.73602 * 120.01030 * 179.74807 * 6 5 4 8 8 C 1.38330 * 119.97585 * 359.72796 * 6 5 4 9 9 C 1.38212 * 119.98844 * 84.99673 * 3 2 1 10 10 C 1.50703 * 119.99299 * 359.97438 * 9 3 2 11 11 H 1.08997 * 109.46998 * 0.02562 * 10 9 3 12 12 C 1.50697 * 109.47297 * 239.99628 * 10 9 3 13 13 H 1.08004 * 119.99895 * 305.36012 * 12 10 9 14 14 C 1.37880 * 119.99987 * 125.35429 * 12 10 9 15 15 N 1.31512 * 120.00017 * 5.28924 * 14 12 10 16 16 Si 1.86800 * 119.99788 * 185.28534 * 14 12 10 17 17 H 1.48499 * 109.46862 * 90.00550 * 16 14 12 18 18 H 1.48496 * 109.47170 * 210.00026 * 16 14 12 19 19 H 1.48495 * 109.47288 * 330.00288 * 16 14 12 20 20 C 1.53002 * 109.47281 * 119.99766 * 10 9 3 21 21 C 1.53000 * 117.49966 * 244.24947 * 20 10 9 22 22 C 1.52996 * 117.50171 * 175.58925 * 20 10 9 23 23 H 1.08998 * 109.46781 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47084 * 300.00104 * 1 2 3 25 25 H 1.08997 * 109.46987 * 60.00048 * 1 2 3 26 26 H 1.08997 * 109.46987 * 119.99952 * 2 1 3 27 27 H 1.09001 * 109.47084 * 239.99896 * 2 1 3 28 28 H 1.08005 * 119.99158 * 0.02562 * 4 3 2 29 29 H 1.08004 * 120.00910 * 180.25222 * 5 4 3 30 30 H 1.07999 * 120.00841 * 180.02562 * 8 6 5 31 31 H 0.96994 * 119.99881 * 179.97438 * 15 14 12 32 32 H 1.09004 * 115.54874 * 29.91156 * 20 10 9 33 33 H 1.08996 * 117.49697 * 359.97438 * 21 20 10 34 34 H 1.09003 * 117.50077 * 145.01713 * 21 20 10 35 35 H 1.09005 * 117.49703 * 214.98308 * 22 20 10 36 36 H 1.09003 * 117.49925 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3665 2.0357 -1.1925 5 6 2.8218 3.3404 -1.1937 6 6 2.9540 4.0278 -0.0001 7 17 3.5321 5.6647 -0.0003 8 6 2.6249 3.4103 1.1932 9 6 2.1642 2.1070 1.1925 10 6 1.8051 1.4343 2.4924 11 1 1.4644 0.4182 2.2936 12 6 0.7059 2.2093 3.1722 13 1 0.8311 3.2638 3.3695 14 6 -0.4596 1.5723 3.5422 15 7 -0.5717 0.2700 3.3971 16 14 -1.8792 2.5590 4.2496 17 1 -2.7674 3.0082 3.1475 18 1 -2.6509 1.7101 5.1923 19 1 -1.3479 3.7432 4.9711 20 6 3.0353 1.3905 3.4010 21 6 3.5984 0.0144 3.7620 22 6 2.8501 0.8358 4.8148 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 2.2670 1.4977 -2.1237 29 1 3.0789 3.8220 -2.1256 30 1 2.7275 3.9465 2.1251 31 1 -1.3915 -0.1781 3.6578 32 1 3.7461 2.2064 3.2695 33 1 3.0921 -0.8596 3.3525 34 1 4.6795 -0.0749 3.8684 35 1 3.4392 1.2866 5.6135 36 1 1.8516 0.5024 5.0978 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260359814.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:59 Heat of formation + Delta-G solvation = 11.240077 kcal Electronic energy + Delta-G solvation = -18117.585211 eV Core-core repulsion = 15398.982397 eV Total energy + Delta-G solvation = -2718.602814 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.66516 -38.13865 -37.32155 -34.93522 -34.42202 -32.71305 -30.09197 -28.69597 -25.63273 -24.53102 -23.22778 -22.89512 -21.37495 -20.63629 -18.36275 -17.66887 -16.60370 -16.43014 -16.16140 -15.65655 -15.01073 -14.59476 -14.39202 -14.28807 -14.07699 -13.72441 -13.29985 -13.13270 -12.90362 -12.80285 -12.45183 -12.28376 -12.19317 -12.03532 -11.81262 -11.72955 -11.61825 -11.47489 -11.09966 -10.62831 -10.46641 -10.26587 -9.53092 -9.15556 -8.03493 -6.07430 0.41587 0.62771 1.28460 1.39542 1.44019 1.50131 2.45567 2.89414 3.22840 3.38212 4.01340 4.05089 4.15633 4.28018 4.40794 4.45031 4.50968 4.69036 4.73202 4.79234 4.84207 4.90538 4.98677 5.04896 5.14826 5.27300 5.32894 5.37772 5.47088 5.56336 5.57865 5.63165 5.71176 5.81295 5.96320 6.10184 6.19394 6.47386 7.03409 7.54073 9.01283 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.015150 B = 0.007740 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.708652 B = 3616.649591 C = 3761.561104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 C -0.097 4.097 4 C -0.105 4.105 5 C -0.132 4.132 6 C -0.046 4.046 7 Cl -0.083 7.083 8 C -0.120 4.120 9 C -0.036 4.036 10 C 0.083 3.917 11 H 0.078 0.922 12 C -0.501 4.501 13 H 0.038 0.962 14 C 0.037 3.963 15 N -0.899 5.899 16 Si 0.927 3.073 17 H -0.283 1.283 18 H -0.285 1.285 19 H -0.277 1.277 20 C -0.136 4.136 21 C -0.180 4.180 22 C -0.169 4.169 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.154 0.846 29 H 0.150 0.850 30 H 0.112 0.888 31 H 0.260 0.740 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.458 1.456 -7.662 10.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.098 4.098 4 C -0.123 4.123 5 C -0.151 4.151 6 C -0.073 4.073 7 Cl -0.054 7.054 8 C -0.139 4.139 9 C -0.037 4.037 10 C 0.065 3.935 11 H 0.096 0.904 12 C -0.539 4.539 13 H 0.056 0.944 14 C -0.163 4.163 15 N -0.537 5.537 16 Si 0.755 3.245 17 H -0.209 1.209 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.154 4.154 21 C -0.217 4.217 22 C -0.206 4.206 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.171 0.829 29 H 0.167 0.833 30 H 0.130 0.870 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.370 1.450 -7.616 10.034 hybrid contribution -1.037 0.852 0.877 1.603 sum 5.333 2.301 -6.739 8.897 Atomic orbital electron populations 1.21700 0.95170 1.01307 1.01832 1.20413 0.96004 0.92078 1.02250 1.20129 0.99455 0.97335 0.92836 1.21192 0.98784 0.94305 0.97979 1.21078 1.02386 0.94950 0.96637 1.20992 1.04409 0.86301 0.95553 1.98313 1.87551 1.20562 1.98987 1.20819 1.01252 0.95304 0.96529 1.20473 0.92880 0.93229 0.97084 1.17795 0.90437 0.98266 0.87027 0.90383 1.21042 1.00428 0.94814 1.37601 0.94392 1.25308 0.99643 0.95483 0.95847 1.69938 1.27168 1.07946 1.48669 0.86046 0.80921 0.79239 0.78342 1.20875 1.21107 1.20178 1.22549 0.99573 0.95280 0.98039 1.22977 0.99190 0.94948 1.04534 1.22626 1.00561 1.04782 0.92600 0.92768 0.92777 0.93126 0.92264 0.89557 0.82878 0.83263 0.86977 0.93097 0.90042 0.90409 0.88118 0.89137 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 9.77 71.98 0.70 -4.54 16 2 C -0.07 -2.41 5.36 29.85 0.16 -2.25 16 3 C -0.10 -3.53 5.13 -19.86 -0.10 -3.63 16 4 C -0.10 -3.13 9.68 22.26 0.22 -2.91 16 5 C -0.13 -3.90 9.83 22.29 0.22 -3.68 16 6 C -0.05 -1.56 6.32 22.32 0.14 -1.42 16 7 Cl -0.08 -2.47 28.96 -2.72 -0.08 -2.55 16 8 C -0.12 -4.73 8.31 22.29 0.19 -4.54 16 9 C -0.04 -1.49 4.77 -19.87 -0.09 -1.58 16 10 C 0.08 3.80 2.04 -12.29 -0.03 3.77 16 11 H 0.08 3.83 3.78 -2.39 -0.01 3.82 16 12 C -0.50 -25.71 7.41 25.60 0.19 -25.52 16 13 H 0.04 2.02 7.64 -2.91 -0.02 2.00 16 14 C 0.04 1.94 5.33 84.66 0.45 2.39 16 15 N -0.90 -47.18 11.72 21.45 0.25 -46.93 16 16 Si 0.93 42.56 29.54 68.60 2.03 44.59 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 18 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 C -0.14 -5.66 5.09 -10.79 -0.05 -5.72 16 21 C -0.18 -6.64 10.18 30.62 0.31 -6.33 16 22 C -0.17 -6.85 9.79 30.62 0.30 -6.55 16 23 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.05 2.45 6.63 -2.39 -0.02 2.44 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 2.26 6.39 -2.39 -0.02 2.24 16 27 H 0.09 2.35 8.05 -2.39 -0.02 2.33 16 28 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.11 4.60 7.80 -2.91 -0.02 4.57 16 31 H 0.26 13.28 8.31 -92.71 -0.77 12.51 16 32 H 0.08 3.28 7.40 -2.39 -0.02 3.26 16 33 H 0.08 3.01 8.03 -2.39 -0.02 2.99 16 34 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 36 H 0.07 3.40 8.03 -2.39 -0.02 3.38 16 Total: -1.00 -53.53 311.29 5.86 -47.66 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 1.07 Total: 19.74 kcal Atomic # 6 Polarization: -65.11 SS G_CDS: 2.60 Total: -62.52 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.25 Total: -46.93 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 17 Polarization: -2.47 SS G_CDS: -0.08 Total: -2.55 kcal Total: -53.53 5.86 -47.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260359814.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.901 kcal (2) G-P(sol) polarization free energy of solvation -53.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds