Wall clock time and date at job start Mon Mar 30 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.25139 * 2 1 4 4 C 1.50642 * 109.25528 * 119.47036 * 2 1 3 5 5 C 1.38886 * 117.74150 * 318.37347 * 4 2 1 6 6 C 1.38047 * 120.53614 * 180.64951 * 5 4 2 7 7 Cl 1.73599 * 120.13429 * 179.71380 * 6 5 4 8 8 C 1.38388 * 119.73586 * 359.42961 * 6 5 4 9 9 C 1.37909 * 119.76236 * 0.16402 * 8 6 5 10 10 C 1.37675 * 122.55625 * 138.20662 * 4 2 1 11 11 C 1.50627 * 122.56266 * 359.14429 * 10 4 2 12 12 C 1.52727 * 110.60011 * 17.80882 * 11 10 4 13 13 C 1.52734 * 109.25599 * 240.56082 * 2 1 3 14 14 H 1.08998 * 109.68679 * 308.27118 * 13 2 1 15 15 C 1.50704 * 109.68024 * 68.82772 * 13 2 1 16 16 H 1.08001 * 119.99811 * 359.97438 * 15 13 2 17 17 C 1.37876 * 119.99896 * 179.97438 * 15 13 2 18 18 N 1.31513 * 119.99872 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 120.00105 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46738 * 90.00263 * 19 17 15 21 21 H 1.48497 * 109.47244 * 210.00079 * 19 17 15 22 22 H 1.48499 * 109.47102 * 330.00468 * 19 17 15 23 23 H 1.09004 * 109.46995 * 300.52194 * 1 2 3 24 24 H 1.08992 * 109.47223 * 60.53129 * 1 2 3 25 25 H 1.09004 * 109.46648 * 180.52803 * 1 2 3 26 26 H 1.09007 * 109.47325 * 179.47040 * 3 2 1 27 27 H 1.08999 * 109.47571 * 299.47210 * 3 2 1 28 28 H 1.09008 * 109.47352 * 59.47345 * 3 2 1 29 29 H 1.08005 * 119.73288 * 0.33759 * 5 4 2 30 30 H 1.07999 * 120.11856 * 180.13534 * 8 6 5 31 31 H 1.07999 * 119.71950 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.25795 * 138.10302 * 11 10 4 33 33 H 1.09004 * 109.24635 * 257.52313 * 11 10 4 34 34 H 1.09000 * 109.68134 * 189.20065 * 12 11 10 35 35 H 1.08997 * 109.67558 * 68.65744 * 12 11 10 36 36 H 0.97000 * 120.00156 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0344 1.4444 0.0000 4 6 2.0268 -0.6997 1.2381 5 6 1.3726 -0.4381 2.4350 6 6 1.7882 -1.0375 3.6071 7 17 0.9675 -0.6973 5.0985 8 6 2.8580 -1.9151 3.5874 9 6 3.5029 -2.1818 2.3979 10 6 3.0879 -1.5767 1.2182 11 6 3.8287 -1.9243 -0.0464 12 6 3.5515 -0.8881 -1.1336 13 6 2.0337 -0.7087 -1.2557 14 1 1.5547 -1.6838 -1.3442 15 6 1.7172 0.1251 -2.4705 16 1 1.2056 1.0697 -2.3588 17 6 2.0808 -0.3179 -3.7245 18 7 2.7034 -1.4684 -3.8605 19 14 1.6880 0.7152 -5.2304 20 1 2.8160 1.6419 -5.5029 21 1 1.4843 -0.1745 -6.4018 22 1 0.4515 1.4997 -4.9837 23 1 -0.3633 0.5219 0.8853 24 1 -0.3633 0.5055 -0.8946 25 1 -0.3633 -1.0277 0.0095 26 1 3.1245 1.4486 0.0095 27 1 1.6769 1.9542 -0.8946 28 1 1.6614 1.9596 0.8853 29 1 0.5350 0.2436 2.4498 30 1 3.1869 -2.3892 4.5003 31 1 4.3380 -2.8665 2.3834 32 1 4.8987 -1.9515 0.1597 33 1 3.5053 -2.9054 -0.3942 34 1 3.9577 -1.2352 -2.0837 35 1 4.0127 0.0614 -0.8618 36 1 2.9595 -1.7799 -4.7427 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260418482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:13 Heat of formation + Delta-G solvation = -6.526354 kcal Electronic energy + Delta-G solvation = -18258.484477 eV Core-core repulsion = 15539.111253 eV Total energy + Delta-G solvation = -2719.373224 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.99075 -36.95059 -35.84594 -33.40257 -32.40364 -29.77335 -29.07618 -26.47200 -26.22945 -24.29243 -22.39713 -21.55974 -20.20549 -17.99552 -16.30169 -16.08232 -15.41783 -14.69692 -14.42979 -13.85730 -13.56695 -13.38504 -13.01727 -12.71031 -12.57388 -12.26778 -11.91680 -11.43632 -11.37054 -11.11294 -11.01934 -10.93703 -10.81843 -10.57493 -10.51579 -10.32248 -10.25375 -9.86359 -9.50165 -8.94356 -8.65328 -8.47488 -8.28106 -8.01021 -6.00275 -4.04940 1.53402 1.65258 2.35542 3.29082 3.36770 3.38963 3.98375 4.42117 5.08568 5.14391 5.29983 5.36047 5.60061 5.67058 5.78280 5.87424 5.99901 6.11239 6.22200 6.24144 6.39166 6.40592 6.50598 6.61330 6.63844 6.64575 6.68366 6.89626 7.04803 7.08082 7.12948 7.20916 7.27611 7.48305 7.72692 7.96465 8.07808 8.43624 8.97067 9.59015 11.05978 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.034685 B = 0.005737 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.068259 B = 4879.434226 C = 5430.144031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.022 4.022 3 C -0.125 4.125 4 C -0.036 4.036 5 C -0.113 4.113 6 C -0.045 4.045 7 Cl -0.091 7.091 8 C -0.125 4.125 9 C -0.118 4.118 10 C -0.058 4.058 11 C -0.084 4.084 12 C -0.115 4.115 13 C 0.064 3.936 14 H 0.029 0.971 15 C -0.505 4.505 16 H 0.061 0.939 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.886 3.114 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.275 1.275 23 H 0.036 0.964 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.030 0.970 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.038 0.962 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.126 0.216 11.711 11.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.023 4.023 3 C -0.182 4.182 4 C -0.037 4.037 5 C -0.131 4.131 6 C -0.071 4.071 7 Cl -0.063 7.063 8 C -0.143 4.143 9 C -0.136 4.136 10 C -0.058 4.058 11 C -0.121 4.121 12 C -0.153 4.153 13 C 0.046 3.954 14 H 0.047 0.953 15 C -0.543 4.543 16 H 0.079 0.921 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.714 3.286 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.200 1.200 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.057 0.943 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.118 0.129 11.704 11.705 hybrid contribution -0.212 0.427 -0.562 0.737 sum -0.094 0.557 11.142 11.156 Atomic orbital electron populations 1.21853 0.94971 1.01051 1.00770 1.19602 0.94772 0.95196 0.92683 1.21856 1.00804 0.94976 1.00588 1.19956 0.93716 0.95255 0.94746 1.21170 1.00816 1.00516 0.90645 1.20747 0.97432 1.02148 0.86804 1.98326 1.78860 1.94661 1.34418 1.20800 0.95894 0.98974 0.98665 1.21133 1.00296 1.00428 0.91733 1.20071 0.95247 0.94876 0.95609 1.20649 0.97383 1.01314 0.92713 1.21725 1.00221 0.95462 0.97896 1.18668 0.91611 0.95549 0.89591 0.95302 1.21213 1.36988 1.05476 0.90613 0.92111 1.24943 0.95291 0.94941 0.98782 1.69879 1.40346 1.19666 1.23034 0.86687 0.78712 0.80231 0.82922 1.20814 1.21393 1.19979 0.94466 0.91390 0.93470 0.93072 0.90965 0.95116 0.85330 0.85844 0.85809 0.92481 0.91004 0.88491 0.94297 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 7.82 37.16 0.29 -2.07 16 2 C -0.02 -0.44 0.41 -155.83 -0.06 -0.50 16 3 C -0.13 -2.33 7.80 37.16 0.29 -2.04 16 4 C -0.04 -0.66 4.71 -104.62 -0.49 -1.15 16 5 C -0.11 -1.85 8.71 -39.41 -0.34 -2.20 16 6 C -0.05 -0.68 6.31 -39.60 -0.25 -0.93 16 7 Cl -0.09 -1.23 28.96 -51.86 -1.50 -2.73 16 8 C -0.12 -1.79 9.84 -39.65 -0.39 -2.18 16 9 C -0.12 -1.78 9.61 -39.45 -0.38 -2.16 16 10 C -0.06 -1.03 5.74 -104.61 -0.60 -1.63 16 11 C -0.08 -1.56 5.67 -28.06 -0.16 -1.72 16 12 C -0.12 -2.54 5.10 -26.70 -0.14 -2.67 16 13 C 0.06 1.48 1.33 -91.74 -0.12 1.36 16 14 H 0.03 0.75 8.09 -51.93 -0.42 0.33 16 15 C -0.50 -12.70 7.13 -34.44 -0.25 -12.95 16 16 H 0.06 1.50 5.65 -52.49 -0.30 1.21 16 17 C 0.06 1.60 5.28 -17.82 -0.09 1.51 16 18 N -0.89 -24.18 11.40 55.43 0.63 -23.55 16 19 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H 0.04 0.59 6.39 -51.93 -0.33 0.25 16 24 H 0.07 1.30 7.19 -51.93 -0.37 0.92 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.97 6.46 -51.92 -0.34 0.63 16 27 H 0.07 1.40 6.04 -51.93 -0.31 1.09 16 28 H 0.03 0.50 8.09 -51.92 -0.42 0.08 16 29 H 0.13 1.99 6.31 -52.48 -0.33 1.66 16 30 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.12 1.58 8.05 -52.49 -0.42 1.16 16 32 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.10 2.41 6.02 -51.93 -0.31 2.10 16 35 H 0.04 0.84 6.27 -51.93 -0.33 0.52 16 36 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 292.00 15.07 4.40 4.40 Total: -1.00 -25.81 292.00 -8.89 -34.71 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -4.71 Total: 1.12 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: -2.70 Total: -29.35 kcal Atomic # 7 Polarization: -24.18 SS G_CDS: 0.63 Total: -23.55 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.73 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -25.81 -8.89 -34.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.180 kcal (2) G-P(sol) polarization free energy of solvation -25.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds