Wall clock time and date at job start Mon Mar 30 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.25139 * 2 1 4 4 C 1.50642 * 109.25528 * 119.47036 * 2 1 3 5 5 C 1.38886 * 117.74150 * 318.37347 * 4 2 1 6 6 C 1.38047 * 120.53614 * 180.64951 * 5 4 2 7 7 Cl 1.73599 * 120.13429 * 179.71380 * 6 5 4 8 8 C 1.38388 * 119.73586 * 359.42961 * 6 5 4 9 9 C 1.37909 * 119.76236 * 0.16402 * 8 6 5 10 10 C 1.37675 * 122.55625 * 138.20662 * 4 2 1 11 11 C 1.50627 * 122.56266 * 359.14429 * 10 4 2 12 12 C 1.52727 * 110.60011 * 17.80882 * 11 10 4 13 13 C 1.52734 * 109.25599 * 240.56082 * 2 1 3 14 14 H 1.08998 * 109.68679 * 308.27118 * 13 2 1 15 15 C 1.50704 * 109.68024 * 68.82772 * 13 2 1 16 16 H 1.08001 * 119.99811 * 359.97438 * 15 13 2 17 17 C 1.37876 * 119.99896 * 179.97438 * 15 13 2 18 18 N 1.31513 * 119.99872 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 120.00105 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46738 * 90.00263 * 19 17 15 21 21 H 1.48497 * 109.47244 * 210.00079 * 19 17 15 22 22 H 1.48499 * 109.47102 * 330.00468 * 19 17 15 23 23 H 1.09004 * 109.46995 * 300.52194 * 1 2 3 24 24 H 1.08992 * 109.47223 * 60.53129 * 1 2 3 25 25 H 1.09004 * 109.46648 * 180.52803 * 1 2 3 26 26 H 1.09007 * 109.47325 * 179.47040 * 3 2 1 27 27 H 1.08999 * 109.47571 * 299.47210 * 3 2 1 28 28 H 1.09008 * 109.47352 * 59.47345 * 3 2 1 29 29 H 1.08005 * 119.73288 * 0.33759 * 5 4 2 30 30 H 1.07999 * 120.11856 * 180.13534 * 8 6 5 31 31 H 1.07999 * 119.71950 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.25795 * 138.10302 * 11 10 4 33 33 H 1.09004 * 109.24635 * 257.52313 * 11 10 4 34 34 H 1.09000 * 109.68134 * 189.20065 * 12 11 10 35 35 H 1.08997 * 109.67558 * 68.65744 * 12 11 10 36 36 H 0.97000 * 120.00156 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0344 1.4444 0.0000 4 6 2.0268 -0.6997 1.2381 5 6 1.3726 -0.4381 2.4350 6 6 1.7882 -1.0375 3.6071 7 17 0.9675 -0.6973 5.0985 8 6 2.8580 -1.9151 3.5874 9 6 3.5029 -2.1818 2.3979 10 6 3.0879 -1.5767 1.2182 11 6 3.8287 -1.9243 -0.0464 12 6 3.5515 -0.8881 -1.1336 13 6 2.0337 -0.7087 -1.2557 14 1 1.5547 -1.6838 -1.3442 15 6 1.7172 0.1251 -2.4705 16 1 1.2056 1.0697 -2.3588 17 6 2.0808 -0.3179 -3.7245 18 7 2.7034 -1.4684 -3.8605 19 14 1.6880 0.7152 -5.2304 20 1 2.8160 1.6419 -5.5029 21 1 1.4843 -0.1745 -6.4018 22 1 0.4515 1.4997 -4.9837 23 1 -0.3633 0.5219 0.8853 24 1 -0.3633 0.5055 -0.8946 25 1 -0.3633 -1.0277 0.0095 26 1 3.1245 1.4486 0.0095 27 1 1.6769 1.9542 -0.8946 28 1 1.6614 1.9596 0.8853 29 1 0.5350 0.2436 2.4498 30 1 3.1869 -2.3892 4.5003 31 1 4.3380 -2.8665 2.3834 32 1 4.8987 -1.9515 0.1597 33 1 3.5053 -2.9054 -0.3942 34 1 3.9577 -1.2352 -2.0837 35 1 4.0127 0.0614 -0.8618 36 1 2.9595 -1.7799 -4.7427 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260418482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:12 Heat of formation + Delta-G solvation = -16.886945 kcal Electronic energy + Delta-G solvation = -18258.933746 eV Core-core repulsion = 15539.111253 eV Total energy + Delta-G solvation = -2719.822493 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.37725 -38.29325 -37.09654 -34.95324 -34.19168 -31.15313 -30.53556 -27.98699 -27.92887 -25.95354 -23.74695 -23.10808 -21.67013 -19.55465 -18.09390 -17.45537 -16.93136 -16.15624 -16.04892 -15.30886 -15.06044 -14.75681 -14.39661 -14.28570 -14.10740 -13.67681 -13.43852 -13.02112 -12.81289 -12.73049 -12.57664 -12.43579 -12.26614 -12.19428 -12.10627 -11.83756 -11.64721 -11.57715 -11.23887 -10.64074 -10.43005 -10.28412 -9.67829 -9.29624 -8.00593 -6.10260 0.28700 0.42890 1.20570 1.43591 1.46134 1.53820 2.48553 2.73051 3.27909 3.82534 3.90351 4.06028 4.30199 4.32246 4.33808 4.42292 4.59500 4.67420 4.79497 4.81973 4.93927 5.04405 5.06842 5.12396 5.18004 5.29664 5.32141 5.38251 5.42851 5.52934 5.53736 5.58598 5.76005 5.95004 5.97387 6.07444 6.21895 6.50197 6.99588 7.56000 9.04537 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.034685 B = 0.005737 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.068259 B = 4879.434226 C = 5430.144031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.021 4.021 3 C -0.119 4.119 4 C -0.056 4.056 5 C -0.116 4.116 6 C -0.047 4.047 7 Cl -0.073 7.073 8 C -0.117 4.117 9 C -0.111 4.111 10 C -0.080 4.080 11 C -0.076 4.076 12 C -0.110 4.110 13 C 0.065 3.935 14 H -0.011 1.011 15 C -0.510 4.510 16 H 0.062 0.938 17 C 0.012 3.988 18 N -0.918 5.918 19 Si 0.942 3.058 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.268 1.268 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.137 0.863 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.083 0.696 14.006 14.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.021 4.021 3 C -0.176 4.176 4 C -0.056 4.056 5 C -0.135 4.135 6 C -0.073 4.073 7 Cl -0.044 7.044 8 C -0.135 4.135 9 C -0.129 4.129 10 C -0.080 4.080 11 C -0.113 4.113 12 C -0.148 4.148 13 C 0.047 3.953 14 H 0.007 0.993 15 C -0.548 4.548 16 H 0.080 0.920 17 C -0.185 4.185 18 N -0.559 5.559 19 Si 0.769 3.231 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.193 1.193 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.155 0.845 30 H 0.171 0.829 31 H 0.168 0.832 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.067 0.620 14.007 14.021 hybrid contribution -0.220 0.260 -1.188 1.236 sum -0.153 0.880 12.819 12.850 Atomic orbital electron populations 1.21798 0.94283 1.00693 1.01409 1.19458 0.95394 0.95408 0.91849 1.21772 1.00228 0.94533 1.01049 1.19837 0.94737 0.96335 0.94702 1.21173 1.00919 1.00954 0.90445 1.20879 0.97532 1.01691 0.87193 1.98338 1.78514 1.94539 1.32980 1.21142 0.94929 0.98035 0.99431 1.21351 1.00727 0.99988 0.90854 1.20055 0.95795 0.96187 0.95963 1.20485 0.98996 0.99371 0.92401 1.21525 0.99286 0.96340 0.97646 1.18550 0.92124 0.93615 0.91021 0.99260 1.21567 1.36087 1.05562 0.91591 0.91963 1.25633 0.95579 0.95943 1.01385 1.70021 1.41573 1.21078 1.23216 0.85796 0.78648 0.78816 0.79824 1.20502 1.21678 1.19304 0.91616 0.92806 0.94370 0.93875 0.92336 0.92633 0.84535 0.82869 0.83226 0.90322 0.92235 0.91833 0.94427 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.52 7.82 71.98 0.56 -3.96 16 2 C -0.02 -0.82 0.41 -53.04 -0.02 -0.84 16 3 C -0.12 -4.35 7.80 71.98 0.56 -3.79 16 4 C -0.06 -1.97 4.71 -19.86 -0.09 -2.06 16 5 C -0.12 -3.55 8.71 22.38 0.20 -3.35 16 6 C -0.05 -1.26 6.31 22.26 0.14 -1.12 16 7 Cl -0.07 -1.70 28.96 -2.72 -0.08 -1.78 16 8 C -0.12 -2.92 9.84 22.23 0.22 -2.70 16 9 C -0.11 -3.04 9.61 22.36 0.21 -2.82 16 10 C -0.08 -2.74 5.74 -19.86 -0.11 -2.85 16 11 C -0.08 -2.83 5.67 29.73 0.17 -2.66 16 12 C -0.11 -5.00 5.10 30.61 0.16 -4.85 16 13 C 0.07 3.11 1.33 -11.52 -0.02 3.10 16 14 H -0.01 -0.59 8.09 -2.39 -0.02 -0.61 16 15 C -0.51 -26.39 7.13 25.60 0.18 -26.21 16 16 H 0.06 3.14 5.65 -2.91 -0.02 3.12 16 17 C 0.01 0.67 5.28 84.65 0.45 1.11 16 18 N -0.92 -51.82 11.40 21.45 0.24 -51.58 16 19 Si 0.94 42.71 29.54 68.60 2.03 44.73 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 H 0.07 1.96 6.39 -2.39 -0.02 1.95 16 24 H 0.05 2.06 7.19 -2.39 -0.02 2.04 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.04 1.61 6.46 -2.38 -0.02 1.60 16 27 H 0.06 2.26 6.04 -2.39 -0.01 2.25 16 28 H 0.05 1.72 8.09 -2.38 -0.02 1.71 16 29 H 0.14 3.84 6.31 -2.91 -0.02 3.82 16 30 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 31 H 0.15 3.26 8.05 -2.91 -0.02 3.24 16 32 H 0.08 2.54 8.13 -2.39 -0.02 2.52 16 33 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.06 3.31 6.02 -2.39 -0.01 3.29 16 35 H 0.04 1.67 6.27 -2.39 -0.01 1.65 16 36 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -56.44 292.00 5.87 -50.57 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.08 Total: 11.06 kcal Atomic # 6 Polarization: -55.60 SS G_CDS: 2.60 Total: -53.00 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.24 Total: -51.58 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.08 Total: -1.78 kcal Total: -56.44 5.87 -50.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.681 kcal (2) G-P(sol) polarization free energy of solvation -56.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds