Wall clock time and date at job start Mon Mar 30 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.25192 * 2 1 4 4 C 1.50638 * 109.24878 * 240.57396 * 2 1 3 5 5 C 1.38885 * 117.74107 * 42.04326 * 4 2 1 6 6 C 1.38053 * 120.53728 * 179.72895 * 5 4 2 7 7 Cl 1.73594 * 120.13373 * 179.97438 * 6 5 4 8 8 C 1.38387 * 119.74159 * 359.97092 * 6 5 4 9 9 C 1.37909 * 119.75700 * 0.12850 * 8 6 5 10 10 C 1.37671 * 122.56533 * 221.97482 * 4 2 1 11 11 C 1.50726 * 122.57216 * 0.74684 * 10 4 2 12 12 C 1.52734 * 110.52992 * 342.16053 * 11 10 4 13 13 C 1.52728 * 109.25020 * 119.46400 * 2 1 3 14 14 H 1.08996 * 109.67988 * 51.61341 * 13 2 1 15 15 C 1.50697 * 109.67990 * 291.06574 * 13 2 1 16 16 H 1.08000 * 119.99815 * 1.05885 * 15 13 2 17 17 C 1.37877 * 120.00128 * 181.06216 * 15 13 2 18 18 N 1.31512 * 120.00092 * 0.02562 * 17 15 13 19 19 Si 1.86807 * 120.00123 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46606 * 90.00217 * 19 17 15 21 21 H 1.48497 * 109.47297 * 209.99909 * 19 17 15 22 22 H 1.48498 * 109.46781 * 330.00359 * 19 17 15 23 23 H 1.09000 * 109.46620 * 300.54024 * 1 2 3 24 24 H 1.09003 * 109.46766 * 60.53381 * 1 2 3 25 25 H 1.08998 * 109.47207 * 180.53889 * 1 2 3 26 26 H 1.08997 * 109.47362 * 179.46507 * 3 2 1 27 27 H 1.09000 * 109.46829 * 299.46553 * 3 2 1 28 28 H 1.09003 * 109.46992 * 59.46293 * 3 2 1 29 29 H 1.08001 * 119.73532 * 359.72887 * 5 4 2 30 30 H 1.08000 * 120.12540 * 180.10784 * 8 6 5 31 31 H 1.07998 * 119.71939 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.30127 * 221.87538 * 11 10 4 33 33 H 1.08998 * 109.25517 * 102.41841 * 11 10 4 34 34 H 1.09002 * 109.68445 * 291.41616 * 12 11 10 35 35 H 1.08999 * 109.68324 * 170.89765 * 12 11 10 36 36 H 0.97001 * 120.00424 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0345 1.4445 0.0000 4 6 2.0266 -0.6987 -1.2387 5 6 1.3779 -0.4294 -2.4368 6 6 1.7888 -1.0336 -3.6082 7 17 0.9700 -0.6899 -5.0998 8 6 2.8561 -1.9142 -3.5887 9 6 3.4995 -2.1837 -2.3990 10 6 3.0853 -1.5786 -1.2191 11 6 3.8257 -1.9291 0.0460 12 6 3.5510 -0.8914 1.1325 13 6 2.0335 -0.7092 1.2554 14 1 1.5529 -1.6834 1.3444 15 6 1.7193 0.1253 2.4703 16 1 1.1944 1.0627 2.3604 17 6 2.1021 -0.3079 3.7220 18 7 2.7419 -1.4491 3.8557 19 14 1.7133 0.7269 5.2279 20 1 0.3878 0.3336 5.7697 21 1 2.7559 0.5071 6.2622 22 1 1.6870 2.1624 4.8486 23 1 -0.3632 0.5222 0.8851 24 1 -0.3633 0.5055 -0.8948 25 1 -0.3633 -1.0276 0.0097 26 1 3.1244 1.4487 0.0096 27 1 1.6770 1.9541 -0.8947 28 1 1.6613 1.9596 0.8852 29 1 0.5452 0.2582 -2.4524 30 1 3.1839 -2.3890 -4.5017 31 1 4.3321 -2.8714 -2.3844 32 1 4.8958 -1.9598 -0.1595 33 1 3.4990 -2.9091 0.3940 34 1 4.0138 0.0570 0.8598 35 1 3.9573 -1.2383 2.0826 36 1 3.0116 -1.7537 4.7363 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260420753.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:14 Heat of formation + Delta-G solvation = -6.324809 kcal Electronic energy + Delta-G solvation = -18260.192835 eV Core-core repulsion = 15540.828350 eV Total energy + Delta-G solvation = -2719.364484 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.98779 -36.94985 -35.84549 -33.40281 -32.40163 -29.77176 -29.06775 -26.47212 -26.23118 -24.28995 -22.39415 -21.55882 -20.20438 -17.99480 -16.30083 -16.08155 -15.41641 -14.69764 -14.42973 -13.85550 -13.56792 -13.38065 -13.01403 -12.71383 -12.57062 -12.26959 -11.91162 -11.43624 -11.36791 -11.10861 -11.02994 -10.93825 -10.78515 -10.59475 -10.51726 -10.32159 -10.25494 -9.86043 -9.49664 -8.94781 -8.64880 -8.47591 -8.27758 -8.01020 -5.99972 -4.05019 1.53535 1.65325 2.35597 3.29073 3.36674 3.38912 3.98505 4.42022 5.08691 5.14331 5.29861 5.36057 5.60112 5.67199 5.78398 5.87667 5.99776 6.11315 6.22506 6.24647 6.38964 6.40723 6.50726 6.61499 6.64076 6.64807 6.68477 6.89786 7.04733 7.08102 7.13286 7.21348 7.27921 7.48565 7.72925 7.96648 8.09247 8.43974 8.96878 9.58970 11.05791 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.034739 B = 0.005739 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.822666 B = 4878.012071 C = 5431.065668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.022 4.022 3 C -0.125 4.125 4 C -0.036 4.036 5 C -0.113 4.113 6 C -0.045 4.045 7 Cl -0.091 7.091 8 C -0.125 4.125 9 C -0.118 4.118 10 C -0.058 4.058 11 C -0.083 4.083 12 C -0.116 4.116 13 C 0.064 3.936 14 H 0.028 0.972 15 C -0.504 4.504 16 H 0.061 0.939 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.886 3.114 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.275 1.275 23 H 0.066 0.934 24 H 0.037 0.963 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.038 0.962 35 H 0.099 0.901 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.077 0.186 -11.695 11.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.023 4.023 3 C -0.182 4.182 4 C -0.037 4.037 5 C -0.132 4.132 6 C -0.071 4.071 7 Cl -0.063 7.063 8 C -0.143 4.143 9 C -0.136 4.136 10 C -0.058 4.058 11 C -0.120 4.120 12 C -0.154 4.154 13 C 0.046 3.954 14 H 0.046 0.954 15 C -0.542 4.542 16 H 0.079 0.921 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.715 3.285 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.200 1.200 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.117 0.883 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.083 0.107 -11.689 11.690 hybrid contribution -0.232 0.422 0.561 0.740 sum -0.149 0.529 -11.128 11.141 Atomic orbital electron populations 1.21855 0.94981 1.01128 1.00677 1.19602 0.94756 0.95211 0.92682 1.21848 1.00910 0.94964 1.00449 1.19951 0.93753 0.95235 0.94725 1.21168 1.00866 1.00470 0.90650 1.20746 0.97509 1.02073 0.86806 1.98326 1.78939 1.94600 1.34403 1.20801 0.95890 0.98979 0.98665 1.21134 1.00306 1.00421 0.91729 1.20096 0.95223 0.94874 0.95623 1.20669 0.97375 1.01299 0.92697 1.21740 1.00184 0.95454 0.98043 1.18665 0.91674 0.95485 0.89594 0.95388 1.21211 1.36208 1.06095 0.90735 0.92128 1.24941 0.95257 0.94984 0.98776 1.69865 1.39593 1.20377 1.23104 0.86685 0.77978 0.80794 0.83084 1.20837 1.21378 1.19974 0.91454 0.94454 0.93443 0.93024 0.95134 0.91036 0.85334 0.85844 0.85808 0.92474 0.91025 0.94323 0.88262 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 7.83 37.16 0.29 -2.07 16 2 C -0.02 -0.44 0.41 -155.83 -0.06 -0.50 16 3 C -0.12 -2.33 7.80 37.16 0.29 -2.04 16 4 C -0.04 -0.66 4.70 -104.62 -0.49 -1.15 16 5 C -0.11 -1.86 8.68 -39.41 -0.34 -2.20 16 6 C -0.05 -0.69 6.31 -39.59 -0.25 -0.94 16 7 Cl -0.09 -1.23 28.96 -51.86 -1.50 -2.73 16 8 C -0.12 -1.79 9.84 -39.65 -0.39 -2.18 16 9 C -0.12 -1.78 9.61 -39.45 -0.38 -2.16 16 10 C -0.06 -1.03 5.74 -104.56 -0.60 -1.63 16 11 C -0.08 -1.56 5.68 -28.01 -0.16 -1.72 16 12 C -0.12 -2.57 5.09 -26.70 -0.14 -2.70 16 13 C 0.06 1.48 1.35 -91.74 -0.12 1.35 16 14 H 0.03 0.73 8.08 -51.93 -0.42 0.31 16 15 C -0.50 -12.70 7.16 -34.44 -0.25 -12.95 16 16 H 0.06 1.50 5.65 -52.49 -0.30 1.20 16 17 C 0.06 1.60 5.28 -17.82 -0.09 1.50 16 18 N -0.89 -24.16 11.31 55.43 0.63 -23.53 16 19 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H 0.07 1.27 7.20 -51.93 -0.37 0.90 16 24 H 0.04 0.59 6.35 -51.93 -0.33 0.26 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.98 6.43 -51.93 -0.33 0.65 16 27 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 28 H 0.07 1.39 6.10 -51.93 -0.32 1.08 16 29 H 0.13 1.99 6.31 -52.49 -0.33 1.66 16 30 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.12 1.58 8.05 -52.49 -0.42 1.16 16 32 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.04 0.84 6.26 -51.93 -0.32 0.51 16 35 H 0.10 2.47 5.93 -51.93 -0.31 2.16 16 36 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 291.81 15.07 4.40 4.40 Total: -1.00 -25.80 291.81 -8.89 -34.69 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.70 Total: 1.14 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: -2.70 Total: -29.38 kcal Atomic # 7 Polarization: -24.16 SS G_CDS: 0.63 Total: -23.53 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.73 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -25.80 -8.89 -34.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260420753.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.367 kcal (2) G-P(sol) polarization free energy of solvation -25.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds