Wall clock time and date at job start Mon Mar 30 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.25192 * 2 1 4 4 C 1.50638 * 109.24878 * 240.57396 * 2 1 3 5 5 C 1.38885 * 117.74107 * 42.04326 * 4 2 1 6 6 C 1.38053 * 120.53728 * 179.72895 * 5 4 2 7 7 Cl 1.73594 * 120.13373 * 179.97438 * 6 5 4 8 8 C 1.38387 * 119.74159 * 359.97092 * 6 5 4 9 9 C 1.37909 * 119.75700 * 0.12850 * 8 6 5 10 10 C 1.37671 * 122.56533 * 221.97482 * 4 2 1 11 11 C 1.50726 * 122.57216 * 0.74684 * 10 4 2 12 12 C 1.52734 * 110.52992 * 342.16053 * 11 10 4 13 13 C 1.52728 * 109.25020 * 119.46400 * 2 1 3 14 14 H 1.08996 * 109.67988 * 51.61341 * 13 2 1 15 15 C 1.50697 * 109.67990 * 291.06574 * 13 2 1 16 16 H 1.08000 * 119.99815 * 1.05885 * 15 13 2 17 17 C 1.37877 * 120.00128 * 181.06216 * 15 13 2 18 18 N 1.31512 * 120.00092 * 0.02562 * 17 15 13 19 19 Si 1.86807 * 120.00123 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46606 * 90.00217 * 19 17 15 21 21 H 1.48497 * 109.47297 * 209.99909 * 19 17 15 22 22 H 1.48498 * 109.46781 * 330.00359 * 19 17 15 23 23 H 1.09000 * 109.46620 * 300.54024 * 1 2 3 24 24 H 1.09003 * 109.46766 * 60.53381 * 1 2 3 25 25 H 1.08998 * 109.47207 * 180.53889 * 1 2 3 26 26 H 1.08997 * 109.47362 * 179.46507 * 3 2 1 27 27 H 1.09000 * 109.46829 * 299.46553 * 3 2 1 28 28 H 1.09003 * 109.46992 * 59.46293 * 3 2 1 29 29 H 1.08001 * 119.73532 * 359.72887 * 5 4 2 30 30 H 1.08000 * 120.12540 * 180.10784 * 8 6 5 31 31 H 1.07998 * 119.71939 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.30127 * 221.87538 * 11 10 4 33 33 H 1.08998 * 109.25517 * 102.41841 * 11 10 4 34 34 H 1.09002 * 109.68445 * 291.41616 * 12 11 10 35 35 H 1.08999 * 109.68324 * 170.89765 * 12 11 10 36 36 H 0.97001 * 120.00424 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0345 1.4445 0.0000 4 6 2.0266 -0.6987 -1.2387 5 6 1.3779 -0.4294 -2.4368 6 6 1.7888 -1.0336 -3.6082 7 17 0.9700 -0.6899 -5.0998 8 6 2.8561 -1.9142 -3.5887 9 6 3.4995 -2.1837 -2.3990 10 6 3.0853 -1.5786 -1.2191 11 6 3.8257 -1.9291 0.0460 12 6 3.5510 -0.8914 1.1325 13 6 2.0335 -0.7092 1.2554 14 1 1.5529 -1.6834 1.3444 15 6 1.7193 0.1253 2.4703 16 1 1.1944 1.0627 2.3604 17 6 2.1021 -0.3079 3.7220 18 7 2.7419 -1.4491 3.8557 19 14 1.7133 0.7269 5.2279 20 1 0.3878 0.3336 5.7697 21 1 2.7559 0.5071 6.2622 22 1 1.6870 2.1624 4.8486 23 1 -0.3632 0.5222 0.8851 24 1 -0.3633 0.5055 -0.8948 25 1 -0.3633 -1.0276 0.0097 26 1 3.1244 1.4487 0.0096 27 1 1.6770 1.9541 -0.8947 28 1 1.6613 1.9596 0.8852 29 1 0.5452 0.2582 -2.4524 30 1 3.1839 -2.3890 -4.5017 31 1 4.3321 -2.8714 -2.3844 32 1 4.8958 -1.9598 -0.1595 33 1 3.4990 -2.9091 0.3940 34 1 4.0138 0.0570 0.8598 35 1 3.9573 -1.2383 2.0826 36 1 3.0116 -1.7537 4.7363 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260420753.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:14 Heat of formation + Delta-G solvation = -16.665811 kcal Electronic energy + Delta-G solvation = -18260.641254 eV Core-core repulsion = 15540.828350 eV Total energy + Delta-G solvation = -2719.812904 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.37498 -38.29330 -37.09668 -34.95773 -34.18529 -31.15124 -30.52907 -27.98983 -27.92994 -25.95121 -23.74448 -23.10716 -21.67035 -19.55493 -18.09181 -17.45677 -16.93199 -16.15556 -16.05005 -15.30794 -15.06170 -14.74974 -14.39763 -14.28946 -14.10758 -13.67869 -13.43072 -13.02955 -12.79181 -12.72655 -12.58992 -12.41765 -12.27758 -12.20181 -12.11212 -11.83523 -11.64465 -11.57342 -11.24016 -10.64430 -10.42076 -10.28623 -9.67796 -9.29700 -8.00154 -6.10300 0.28767 0.42877 1.20575 1.43473 1.46096 1.53845 2.48480 2.73101 3.27759 3.82530 3.90367 4.05928 4.30156 4.32428 4.33908 4.42440 4.59307 4.67699 4.79631 4.82018 4.93793 5.04461 5.07007 5.12414 5.18087 5.29790 5.32143 5.38488 5.42961 5.53086 5.53872 5.58580 5.75833 5.95107 5.97464 6.07672 6.23215 6.50549 6.99396 7.55977 9.04394 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.034739 B = 0.005739 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.822666 B = 4878.012071 C = 5431.065668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.021 4.021 3 C -0.118 4.118 4 C -0.056 4.056 5 C -0.116 4.116 6 C -0.047 4.047 7 Cl -0.072 7.072 8 C -0.117 4.117 9 C -0.111 4.111 10 C -0.080 4.080 11 C -0.075 4.075 12 C -0.111 4.111 13 C 0.065 3.935 14 H -0.011 1.011 15 C -0.510 4.510 16 H 0.062 0.938 17 C 0.013 3.987 18 N -0.918 5.918 19 Si 0.942 3.058 20 H -0.281 1.281 21 H -0.289 1.289 22 H -0.268 1.268 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.137 0.863 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.036 0.964 35 H 0.066 0.934 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.029 0.653 -13.985 14.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.021 4.021 3 C -0.175 4.175 4 C -0.056 4.056 5 C -0.135 4.135 6 C -0.073 4.073 7 Cl -0.044 7.044 8 C -0.135 4.135 9 C -0.129 4.129 10 C -0.080 4.080 11 C -0.112 4.112 12 C -0.149 4.149 13 C 0.047 3.953 14 H 0.007 0.993 15 C -0.548 4.548 16 H 0.080 0.920 17 C -0.185 4.185 18 N -0.559 5.559 19 Si 0.769 3.231 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.192 1.192 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.155 0.845 30 H 0.171 0.829 31 H 0.168 0.832 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.026 0.586 -13.988 14.000 hybrid contribution -0.239 0.257 1.187 1.238 sum -0.213 0.843 -12.801 12.831 Atomic orbital electron populations 1.21802 0.94264 1.00719 1.01411 1.19457 0.95403 0.95393 0.91851 1.21762 1.00260 0.94541 1.00947 1.19832 0.94777 0.96313 0.94684 1.21171 1.00972 1.00906 0.90442 1.20879 0.97601 1.01619 0.87199 1.98337 1.78591 1.94477 1.32962 1.21143 0.94921 0.98044 0.99430 1.21352 1.00728 0.99990 0.90853 1.20078 0.95777 0.96186 0.95974 1.20505 0.98978 0.99360 0.92395 1.21541 0.99263 0.96316 0.97804 1.18549 0.92173 0.93569 0.91023 0.99319 1.21563 1.35342 1.06174 0.91717 0.91997 1.25630 0.95534 0.95998 1.01367 1.70010 1.40777 1.21768 1.23296 0.85796 0.77485 0.79733 0.80068 1.20757 1.21533 1.19206 0.92768 0.91612 0.94376 0.93891 0.92645 0.92418 0.84529 0.82868 0.83231 0.90333 0.92243 0.94492 0.91578 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.52 7.83 71.98 0.56 -3.95 16 2 C -0.02 -0.82 0.41 -53.04 -0.02 -0.84 16 3 C -0.12 -4.34 7.80 71.98 0.56 -3.77 16 4 C -0.06 -1.97 4.70 -19.86 -0.09 -2.06 16 5 C -0.12 -3.55 8.68 22.38 0.19 -3.35 16 6 C -0.05 -1.26 6.31 22.26 0.14 -1.12 16 7 Cl -0.07 -1.70 28.96 -2.72 -0.08 -1.78 16 8 C -0.12 -2.92 9.84 22.23 0.22 -2.70 16 9 C -0.11 -3.04 9.61 22.36 0.21 -2.83 16 10 C -0.08 -2.75 5.74 -19.83 -0.11 -2.86 16 11 C -0.08 -2.83 5.68 29.77 0.17 -2.66 16 12 C -0.11 -5.07 5.09 30.62 0.16 -4.91 16 13 C 0.07 3.11 1.35 -11.52 -0.02 3.09 16 14 H -0.01 -0.62 8.08 -2.39 -0.02 -0.64 16 15 C -0.51 -26.39 7.16 25.60 0.18 -26.21 16 16 H 0.06 3.12 5.65 -2.91 -0.02 3.11 16 17 C 0.01 0.67 5.28 84.65 0.45 1.12 16 18 N -0.92 -51.73 11.31 21.45 0.24 -51.48 16 19 Si 0.94 42.70 29.54 68.60 2.03 44.73 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 22 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 23 H 0.05 2.06 7.20 -2.39 -0.02 2.04 16 24 H 0.07 1.96 6.35 -2.39 -0.02 1.95 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.04 1.62 6.43 -2.39 -0.02 1.60 16 27 H 0.05 1.73 8.05 -2.39 -0.02 1.71 16 28 H 0.06 2.24 6.10 -2.39 -0.01 2.22 16 29 H 0.14 3.84 6.31 -2.91 -0.02 3.82 16 30 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 31 H 0.15 3.27 8.05 -2.91 -0.02 3.24 16 32 H 0.08 2.54 8.13 -2.39 -0.02 2.52 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.04 1.64 6.26 -2.39 -0.01 1.63 16 35 H 0.07 3.44 5.93 -2.39 -0.01 3.43 16 36 H 0.26 13.94 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -56.38 291.81 5.87 -50.51 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.08 Total: 11.09 kcal Atomic # 6 Polarization: -55.67 SS G_CDS: 2.60 Total: -53.06 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.24 Total: -51.48 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.08 Total: -1.78 kcal Total: -56.38 5.87 -50.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260420753.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.843 kcal (2) G-P(sol) polarization free energy of solvation -56.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds