Wall clock time and date at job start Mon Mar 30 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38263 * 119.99237 * 2 1 4 4 C 1.38218 * 120.02930 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99510 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.46862 * 359.97438 * 5 4 3 7 7 C 1.50695 * 109.47455 * 119.99823 * 5 4 3 8 8 H 1.07999 * 120.00208 * 54.93140 * 7 5 4 9 9 C 1.37881 * 119.99387 * 235.20735 * 7 5 4 10 10 N 1.31524 * 119.99314 * 184.52197 * 9 7 5 11 11 Si 1.86790 * 120.00439 * 4.51974 * 9 7 5 12 12 H 1.48506 * 109.47098 * 84.67400 * 11 9 7 13 13 H 1.48501 * 109.47244 * 204.67148 * 11 9 7 14 14 H 1.48498 * 109.47440 * 324.67749 * 11 9 7 15 15 C 1.53010 * 109.46488 * 239.99659 * 5 4 3 16 16 C 1.53000 * 117.49710 * 133.77481 * 15 5 4 17 17 C 1.52992 * 117.49769 * 65.15416 * 15 5 4 18 18 C 1.38238 * 120.01129 * 0.24922 * 4 3 2 19 19 C 1.38332 * 119.98648 * 359.47324 * 18 4 3 20 20 Cl 1.73602 * 120.01588 * 180.29160 * 19 18 4 21 21 C 1.38186 * 119.99430 * 179.97438 * 2 1 3 22 22 C 1.50702 * 120.00921 * 359.97438 * 21 2 1 23 23 H 1.08998 * 109.47094 * 89.99957 * 1 2 3 24 24 H 1.09001 * 109.47192 * 209.99935 * 1 2 3 25 25 H 1.09001 * 109.47160 * 329.99756 * 1 2 3 26 26 H 1.08008 * 119.98682 * 0.02578 * 3 2 1 27 27 H 0.96998 * 119.99319 * 180.02562 * 10 9 7 28 28 H 1.08995 * 115.54805 * 279.47693 * 15 5 4 29 29 H 1.08999 * 117.49799 * 359.97438 * 16 15 5 30 30 H 1.09000 * 117.49998 * 145.01358 * 16 15 5 31 31 H 1.09001 * 117.49587 * 214.97423 * 17 15 5 32 32 H 1.08996 * 117.50544 * 359.97265 * 17 15 5 33 33 H 1.07998 * 120.00195 * 179.74887 * 18 4 3 34 34 H 1.09002 * 109.46682 * 90.00134 * 22 21 2 35 35 H 1.08998 * 109.47402 * 210.00104 * 22 21 2 36 36 H 1.08997 * 109.46687 * 330.00201 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5803 1.1984 -0.0005 5 6 4.3329 2.5040 -0.0011 6 1 3.6240 3.3319 -0.0015 7 6 5.1997 2.5849 1.2289 8 1 5.9092 1.7991 1.4422 9 6 5.0828 3.6593 2.0851 10 7 5.8993 3.7754 3.1097 11 14 3.7651 4.9499 1.7899 12 1 2.4868 4.5001 2.3973 13 1 4.1823 6.2338 2.4086 14 1 3.5785 5.1418 0.3293 15 6 5.2120 2.5853 -1.2508 16 6 5.1891 3.8916 -2.0469 17 6 4.5075 2.6419 -2.6077 18 6 4.2725 0.0018 -0.0063 19 6 3.5816 -1.1966 -0.0005 20 17 4.4502 -2.6998 0.0000 21 6 2.1978 -1.1968 0.0005 22 6 1.4444 -2.5020 0.0017 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6578 2.1327 0.0004 27 1 5.8169 4.5311 3.7122 28 1 6.1572 2.0451 -1.1965 29 1 4.5474 4.6930 -1.6807 30 1 6.1194 4.2112 -2.5166 31 1 4.9894 2.1393 -3.4463 32 1 3.4177 2.6208 -2.6103 33 1 5.3525 0.0027 -0.0108 34 1 1.2624 -2.8173 -1.0257 35 1 2.0337 -3.2612 0.5158 36 1 0.4922 -2.3713 0.5158 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260439398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:39 Heat of formation + Delta-G solvation = 20.966286 kcal Electronic energy + Delta-G solvation = -17784.715297 eV Core-core repulsion = 15066.534244 eV Total energy + Delta-G solvation = -2718.181054 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.40086 -37.02440 -36.03402 -33.61759 -32.39529 -31.46253 -29.26220 -27.07162 -25.45793 -22.94364 -21.73504 -21.62239 -20.59017 -18.68867 -17.17773 -15.66312 -15.51277 -14.86786 -14.76438 -14.18894 -13.92178 -13.58305 -12.85917 -12.75876 -12.69163 -12.46366 -12.18846 -12.01952 -11.95166 -11.46549 -11.16484 -11.06524 -10.86944 -10.82908 -10.66892 -10.28955 -10.28540 -9.82516 -9.72678 -9.16736 -8.97397 -8.61226 -8.09259 -7.78909 -6.16868 -4.16292 1.74346 1.87402 2.57701 3.21587 3.27443 3.30472 4.18392 4.32750 4.55808 5.06986 5.15349 5.23045 5.30730 5.43258 5.54271 5.65624 5.69828 5.76181 5.82075 5.86647 5.97157 6.04574 6.08160 6.12900 6.18334 6.28243 6.36299 6.54784 6.62577 6.71659 6.81454 6.88562 6.98229 7.12167 7.35851 7.45986 7.63191 8.41190 8.87745 9.44172 10.95793 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.017840 B = 0.007014 C = 0.006803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.120655 B = 3990.944100 C = 4114.972995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.079 4.079 3 C -0.129 4.129 4 C -0.012 4.012 5 C 0.068 3.932 6 H 0.050 0.950 7 C -0.501 4.501 8 H 0.078 0.922 9 C 0.076 3.924 10 N -0.893 5.893 11 Si 0.872 3.128 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.262 1.262 15 C -0.111 4.111 16 C -0.184 4.184 17 C -0.200 4.200 18 C -0.096 4.096 19 C -0.029 4.029 20 Cl -0.090 7.090 21 C -0.109 4.109 22 C -0.112 4.112 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.116 0.884 27 H 0.265 0.735 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.471 -7.446 -8.202 13.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.079 4.079 3 C -0.147 4.147 4 C -0.013 4.013 5 C 0.049 3.951 6 H 0.068 0.932 7 C -0.538 4.538 8 H 0.096 0.904 9 C -0.127 4.127 10 N -0.529 5.529 11 Si 0.699 3.301 12 H -0.200 1.200 13 H -0.214 1.214 14 H -0.187 1.187 15 C -0.130 4.130 16 C -0.221 4.221 17 C -0.237 4.237 18 C -0.115 4.115 19 C -0.055 4.055 20 Cl -0.061 7.061 21 C -0.109 4.109 22 C -0.168 4.168 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.134 0.866 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.147 0.853 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.334 -7.460 -8.016 13.761 hybrid contribution -0.429 0.710 0.049 0.831 sum -8.763 -6.750 -7.967 13.632 Atomic orbital electron populations 1.20799 0.91522 1.02560 1.01897 1.19509 0.95466 0.92060 1.00908 1.21003 0.94121 0.96983 1.02614 1.20409 0.92761 0.96402 0.91721 1.18056 0.93606 0.89937 0.93494 0.93185 1.20836 1.20280 1.07985 1.04685 0.90356 1.25066 0.95465 0.97395 0.94792 1.69889 1.36833 1.30823 1.15405 0.86953 0.82754 0.81551 0.78814 1.20013 1.21365 1.18672 1.22628 1.00600 0.98885 0.90898 1.22868 1.01922 0.92196 1.05152 1.22917 0.99284 1.02866 0.98678 1.20827 1.00519 0.89761 1.00356 1.20748 0.91452 0.86398 1.06926 1.98306 1.76918 1.33735 1.97121 1.19280 0.91411 0.95385 1.04874 1.20798 0.99824 0.94264 1.01957 0.91520 0.91431 0.91741 0.86594 0.92454 0.88497 0.89551 0.89796 0.90078 0.89791 0.85261 0.91638 0.91486 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.61 36.01 0.35 -1.02 16 2 C -0.08 -1.28 5.88 -104.63 -0.62 -1.89 16 3 C -0.13 -2.37 9.33 -39.58 -0.37 -2.74 16 4 C -0.01 -0.25 4.55 -104.63 -0.48 -0.72 16 5 C 0.07 1.51 2.04 -92.92 -0.19 1.32 16 6 H 0.05 1.13 4.05 -51.93 -0.21 0.92 16 7 C -0.50 -13.32 8.52 -34.44 -0.29 -13.62 16 8 H 0.08 2.27 7.91 -52.49 -0.42 1.86 16 9 C 0.08 2.09 5.47 -17.81 -0.10 2.00 16 10 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 11 Si 0.87 20.69 27.24 -169.99 -4.63 16.06 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.26 -5.83 5.93 56.52 0.33 -5.50 16 15 C -0.11 -2.22 4.69 -90.62 -0.43 -2.65 16 16 C -0.18 -3.34 10.18 -26.73 -0.27 -3.62 16 17 C -0.20 -3.40 10.00 -26.74 -0.27 -3.67 16 18 C -0.10 -1.89 8.67 -39.55 -0.34 -2.23 16 19 C -0.03 -0.51 6.32 -39.49 -0.25 -0.76 16 20 Cl -0.09 -1.40 27.30 -51.86 -1.42 -2.82 16 21 C -0.11 -1.75 5.88 -104.59 -0.62 -2.37 16 22 C -0.11 -1.41 9.21 36.01 0.33 -1.08 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.73 5.95 -51.93 -0.31 0.42 16 25 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 26 H 0.12 2.01 7.95 -52.48 -0.42 1.60 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 29 H 0.09 1.62 7.61 -51.93 -0.40 1.23 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.13 2.59 7.97 -52.49 -0.42 2.18 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.84 6.91 -51.93 -0.36 0.48 16 36 H 0.07 0.74 5.95 -51.93 -0.31 0.43 16 LS Contribution 308.48 15.07 4.65 4.65 Total: -1.00 -28.25 308.48 -9.15 -37.40 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.99 Total: 3.44 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: -3.53 Total: -33.05 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.77 Total: -25.69 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.63 Total: 16.06 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -1.42 Total: -2.82 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.25 -9.15 -37.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.368 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds