Wall clock time and date at job start Mon Mar 30 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38263 * 119.99237 * 2 1 4 4 C 1.38218 * 120.02930 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99510 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.46862 * 359.97438 * 5 4 3 7 7 C 1.50695 * 109.47455 * 119.99823 * 5 4 3 8 8 H 1.07999 * 120.00208 * 54.93140 * 7 5 4 9 9 C 1.37881 * 119.99387 * 235.20735 * 7 5 4 10 10 N 1.31524 * 119.99314 * 184.52197 * 9 7 5 11 11 Si 1.86790 * 120.00439 * 4.51974 * 9 7 5 12 12 H 1.48506 * 109.47098 * 84.67400 * 11 9 7 13 13 H 1.48501 * 109.47244 * 204.67148 * 11 9 7 14 14 H 1.48498 * 109.47440 * 324.67749 * 11 9 7 15 15 C 1.53010 * 109.46488 * 239.99659 * 5 4 3 16 16 C 1.53000 * 117.49710 * 133.77481 * 15 5 4 17 17 C 1.52992 * 117.49769 * 65.15416 * 15 5 4 18 18 C 1.38238 * 120.01129 * 0.24922 * 4 3 2 19 19 C 1.38332 * 119.98648 * 359.47324 * 18 4 3 20 20 Cl 1.73602 * 120.01588 * 180.29160 * 19 18 4 21 21 C 1.38186 * 119.99430 * 179.97438 * 2 1 3 22 22 C 1.50702 * 120.00921 * 359.97438 * 21 2 1 23 23 H 1.08998 * 109.47094 * 89.99957 * 1 2 3 24 24 H 1.09001 * 109.47192 * 209.99935 * 1 2 3 25 25 H 1.09001 * 109.47160 * 329.99756 * 1 2 3 26 26 H 1.08008 * 119.98682 * 0.02578 * 3 2 1 27 27 H 0.96998 * 119.99319 * 180.02562 * 10 9 7 28 28 H 1.08995 * 115.54805 * 279.47693 * 15 5 4 29 29 H 1.08999 * 117.49799 * 359.97438 * 16 15 5 30 30 H 1.09000 * 117.49998 * 145.01358 * 16 15 5 31 31 H 1.09001 * 117.49587 * 214.97423 * 17 15 5 32 32 H 1.08996 * 117.50544 * 359.97265 * 17 15 5 33 33 H 1.07998 * 120.00195 * 179.74887 * 18 4 3 34 34 H 1.09002 * 109.46682 * 90.00134 * 22 21 2 35 35 H 1.08998 * 109.47402 * 210.00104 * 22 21 2 36 36 H 1.08997 * 109.46687 * 330.00201 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5803 1.1984 -0.0005 5 6 4.3329 2.5040 -0.0011 6 1 3.6240 3.3319 -0.0015 7 6 5.1997 2.5849 1.2289 8 1 5.9092 1.7991 1.4422 9 6 5.0828 3.6593 2.0851 10 7 5.8993 3.7754 3.1097 11 14 3.7651 4.9499 1.7899 12 1 2.4868 4.5001 2.3973 13 1 4.1823 6.2338 2.4086 14 1 3.5785 5.1418 0.3293 15 6 5.2120 2.5853 -1.2508 16 6 5.1891 3.8916 -2.0469 17 6 4.5075 2.6419 -2.6077 18 6 4.2725 0.0018 -0.0063 19 6 3.5816 -1.1966 -0.0005 20 17 4.4502 -2.6998 0.0000 21 6 2.1978 -1.1968 0.0005 22 6 1.4444 -2.5020 0.0017 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6578 2.1327 0.0004 27 1 5.8169 4.5311 3.7122 28 1 6.1572 2.0451 -1.1965 29 1 4.5474 4.6930 -1.6807 30 1 6.1194 4.2112 -2.5166 31 1 4.9894 2.1393 -3.4463 32 1 3.4177 2.6208 -2.6103 33 1 5.3525 0.0027 -0.0108 34 1 1.2624 -2.8173 -1.0257 35 1 2.0337 -3.2612 0.5158 36 1 0.4922 -2.3713 0.5158 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260439398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:39 Heat of formation + Delta-G solvation = 7.918202 kcal Electronic energy + Delta-G solvation = -17785.281105 eV Core-core repulsion = 15066.534244 eV Total energy + Delta-G solvation = -2718.746861 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.78541 -38.50842 -37.35017 -35.17973 -34.20654 -32.73670 -30.86675 -28.30579 -26.88766 -24.68232 -23.13065 -22.98253 -22.01402 -20.23252 -19.15642 -17.12286 -16.84089 -16.62709 -16.11440 -15.56739 -15.32719 -15.10498 -14.61495 -14.04209 -13.93435 -13.72519 -13.51111 -13.36125 -13.14883 -12.96550 -12.81093 -12.61661 -12.25013 -12.17127 -11.94037 -11.81661 -11.69212 -11.63936 -11.42167 -10.87720 -10.66748 -10.50920 -9.44965 -9.19047 -8.29049 -6.32185 0.34533 0.50512 1.23030 1.32643 1.34304 1.43382 2.33194 2.76945 2.99368 3.22295 3.85568 3.93769 4.04552 4.15586 4.24561 4.29214 4.36712 4.51346 4.53521 4.76118 4.79637 4.82457 4.85332 4.91715 4.92400 5.02192 5.06841 5.17549 5.26873 5.33715 5.41189 5.46152 5.51519 5.59723 5.66780 5.86272 6.07198 6.34057 6.72812 7.31523 8.87713 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.017840 B = 0.007014 C = 0.006803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.120655 B = 3990.944100 C = 4114.972995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.075 4.075 3 C -0.140 4.140 4 C -0.037 4.037 5 C 0.074 3.926 6 H 0.050 0.950 7 C -0.497 4.497 8 H 0.032 0.968 9 C 0.013 3.987 10 N -0.948 5.948 11 Si 0.933 3.067 12 H -0.265 1.265 13 H -0.289 1.289 14 H -0.236 1.236 15 C -0.142 4.142 16 C -0.184 4.184 17 C -0.169 4.169 18 C -0.117 4.117 19 C -0.039 4.039 20 Cl -0.076 7.076 21 C -0.106 4.106 22 C -0.111 4.111 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.126 0.874 27 H 0.265 0.735 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.750 -7.969 -10.136 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.075 4.075 3 C -0.158 4.158 4 C -0.038 4.038 5 C 0.055 3.945 6 H 0.068 0.932 7 C -0.535 4.535 8 H 0.050 0.950 9 C -0.184 4.184 10 N -0.588 5.588 11 Si 0.758 3.242 12 H -0.190 1.190 13 H -0.216 1.216 14 H -0.160 1.160 15 C -0.160 4.160 16 C -0.221 4.221 17 C -0.206 4.206 18 C -0.136 4.136 19 C -0.065 4.065 20 Cl -0.047 7.047 21 C -0.107 4.107 22 C -0.167 4.167 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.089 0.911 26 H 0.144 0.856 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.622 -8.003 -9.980 17.283 hybrid contribution 0.641 0.686 0.621 1.126 sum -10.981 -7.317 -9.360 16.178 Atomic orbital electron populations 1.20902 0.88181 1.03872 1.03638 1.19966 0.97771 0.91006 0.98769 1.21201 0.93238 0.98606 1.02762 1.20243 0.93852 0.95475 0.94200 1.17886 0.93141 0.91167 0.92270 0.93243 1.21050 1.19769 1.06298 1.06365 0.94968 1.25939 0.97879 0.99983 0.94570 1.70055 1.39464 1.32095 1.17184 0.85953 0.79817 0.78312 0.80154 1.19035 1.21563 1.16009 1.22376 1.00440 1.01247 0.91973 1.22977 1.02873 0.91730 1.04485 1.22947 0.99658 1.01199 0.96803 1.20706 0.99622 0.90953 1.02273 1.20886 0.92479 0.86330 1.06840 1.98303 1.76882 1.32458 1.97043 1.19769 0.90833 0.97275 1.02820 1.20892 1.00280 0.92043 1.03460 0.89376 0.89483 0.91146 0.85563 0.92600 0.90128 0.89896 0.88166 0.87936 0.88958 0.87512 0.89776 0.91602 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 9.61 71.24 0.68 -1.50 16 2 C -0.07 -2.19 5.88 -19.87 -0.12 -2.31 16 3 C -0.14 -4.92 9.33 22.27 0.21 -4.71 16 4 C -0.04 -1.52 4.55 -19.87 -0.09 -1.61 16 5 C 0.07 3.35 2.04 -12.28 -0.03 3.32 16 6 H 0.05 2.20 4.05 -2.39 -0.01 2.19 16 7 C -0.50 -27.86 8.52 25.60 0.22 -27.65 16 8 H 0.03 2.03 7.91 -2.91 -0.02 2.01 16 9 C 0.01 0.77 5.47 84.65 0.46 1.23 16 10 N -0.95 -59.07 13.96 21.45 0.30 -58.78 16 11 Si 0.93 43.01 27.24 68.60 1.87 44.88 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 14 H -0.24 -9.81 5.93 99.48 0.59 -9.22 16 15 C -0.14 -5.70 4.69 -10.79 -0.05 -5.75 16 16 C -0.18 -6.37 10.18 30.59 0.31 -6.06 16 17 C -0.17 -5.38 10.00 30.59 0.31 -5.08 16 18 C -0.12 -4.73 8.67 22.29 0.19 -4.54 16 19 C -0.04 -1.35 6.32 22.33 0.14 -1.21 16 20 Cl -0.08 -2.32 27.30 -2.72 -0.07 -2.40 16 21 C -0.11 -3.16 5.88 -19.84 -0.12 -3.28 16 22 C -0.11 -2.37 9.21 71.24 0.66 -1.71 16 23 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.09 1.41 5.95 -2.39 -0.01 1.40 16 25 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 26 H 0.13 4.08 7.95 -2.91 -0.02 4.06 16 27 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 28 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 29 H 0.08 2.94 7.61 -2.39 -0.02 2.92 16 30 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.11 4.65 7.97 -2.91 -0.02 4.63 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.45 6.91 -2.39 -0.02 1.43 16 36 H 0.09 1.54 5.95 -2.39 -0.01 1.52 16 Total: -1.00 -64.56 308.48 5.83 -58.73 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.96 Total: 18.40 kcal Atomic # 6 Polarization: -63.62 SS G_CDS: 2.78 Total: -60.84 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.30 Total: -58.78 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.87 Total: 44.88 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.07 Total: -2.40 kcal Total: -64.56 5.83 -58.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.647 kcal (2) G-P(sol) polarization free energy of solvation -64.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds