Wall clock time and date at job start Mon Mar 30 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38264 * 119.98447 * 2 1 4 4 C 1.38193 * 120.01570 * 179.97438 * 3 2 1 5 5 C 1.38373 * 119.98488 * 0.02562 * 4 3 2 6 6 Cl 1.73595 * 120.01648 * 180.02562 * 5 4 3 7 7 C 1.38332 * 119.97326 * 0.27926 * 5 4 3 8 8 C 1.50706 * 120.01023 * 179.72017 * 7 5 4 9 9 H 1.08996 * 109.47164 * 174.74303 * 8 7 5 10 10 C 1.50697 * 109.46482 * 54.74504 * 8 7 5 11 11 H 1.08004 * 119.99917 * 269.97347 * 10 8 7 12 12 C 1.37879 * 120.00066 * 89.97914 * 10 8 7 13 13 N 1.31509 * 119.99899 * 6.06485 * 12 10 8 14 14 Si 1.86802 * 120.00119 * 186.06532 * 12 10 8 15 15 H 1.48505 * 109.46989 * 89.99755 * 14 12 10 16 16 H 1.48493 * 109.47313 * 209.99698 * 14 12 10 17 17 H 1.48506 * 109.47036 * 330.00271 * 14 12 10 18 18 C 1.52995 * 109.46988 * 294.74823 * 8 7 5 19 19 C 1.53003 * 117.49716 * 248.96420 * 18 8 7 20 20 C 1.52995 * 59.99944 * 252.51116 * 19 18 8 21 21 C 1.38215 * 119.98785 * 180.02562 * 2 1 3 22 22 C 1.50692 * 119.99660 * 359.97438 * 21 2 1 23 23 H 1.08996 * 109.46960 * 90.00062 * 1 2 3 24 24 H 1.09002 * 109.46232 * 209.99544 * 1 2 3 25 25 H 1.08999 * 109.47148 * 329.99466 * 1 2 3 26 26 H 1.08001 * 119.99484 * 0.02562 * 3 2 1 27 27 H 1.07997 * 120.00554 * 180.02562 * 4 3 2 28 28 H 0.97009 * 119.99981 * 179.97438 * 13 12 10 29 29 H 1.08997 * 115.55218 * 34.67567 * 18 8 7 30 30 H 1.08998 * 117.49612 * 0.02562 * 19 18 8 31 31 H 1.09002 * 117.49937 * 145.02290 * 19 18 8 32 32 H 1.09000 * 117.50035 * 252.50915 * 20 19 18 33 33 H 1.08996 * 117.52110 * 107.48419 * 20 19 18 34 34 H 1.09004 * 109.47677 * 95.60871 * 22 21 2 35 35 H 1.08999 * 109.47348 * 215.61012 * 22 21 2 36 36 H 1.09001 * 109.47040 * 335.61109 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5800 1.1983 0.0005 5 6 4.2722 0.0002 0.0005 6 17 6.0081 0.0002 0.0019 7 6 3.5803 -1.1977 -0.0058 8 6 4.3334 -2.5031 -0.0122 9 1 3.6285 -3.3296 0.0774 10 6 5.2943 -2.5341 1.1482 11 1 6.3005 -2.1613 1.0263 12 6 4.8889 -3.0387 2.3657 13 7 3.7060 -3.6013 2.4833 14 14 6.0197 -2.9231 3.8480 15 1 5.7616 -1.6511 4.5695 16 1 5.7628 -4.0688 4.7571 17 1 7.4338 -2.9574 3.3957 18 6 5.1118 -2.6363 -1.3226 19 6 4.6455 -3.7026 -2.3159 20 6 5.9399 -3.9066 -1.5263 21 6 2.1979 -1.1971 -0.0005 22 6 1.4441 -2.5019 -0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3632 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6577 2.1327 0.0004 27 1 4.1195 2.1339 0.0010 28 1 3.4210 -3.9567 3.3397 29 1 5.5078 -1.7065 -1.7308 30 1 3.7839 -4.3087 -2.0360 31 1 4.7345 -3.4743 -3.3780 32 1 6.8806 -3.8125 -2.0688 33 1 5.9306 -4.6471 -0.7265 34 1 1.3488 -2.8667 -1.0233 35 1 1.9860 -3.2347 0.5975 36 1 0.4520 -2.3484 0.4242 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260447476.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:32 Heat of formation + Delta-G solvation = 28.313493 kcal Electronic energy + Delta-G solvation = -18352.486153 eV Core-core repulsion = 15634.623698 eV Total energy + Delta-G solvation = -2717.862455 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.16218 -36.58080 -35.50996 -33.11332 -32.40542 -31.50699 -28.17624 -26.23892 -25.58260 -23.63225 -21.47859 -20.73081 -20.17100 -18.82988 -16.50282 -15.77369 -15.11886 -14.76459 -14.50992 -13.81121 -13.64380 -13.12656 -12.61725 -12.40804 -12.28586 -12.13640 -11.93089 -11.70369 -11.49522 -11.07699 -10.89474 -10.71484 -10.69725 -10.40487 -10.20693 -10.16707 -9.96726 -9.75287 -9.31339 -8.89518 -8.67887 -8.30373 -7.70160 -7.48325 -6.03165 -3.99706 1.99042 2.18149 3.20373 3.33276 3.39814 3.43588 4.38987 4.48392 4.85649 5.28203 5.38692 5.48021 5.62652 5.74735 5.77571 5.91542 5.96133 5.98610 6.04423 6.11530 6.35167 6.38653 6.40900 6.47628 6.54571 6.59113 6.83564 6.91576 6.96918 7.04174 7.12446 7.19147 7.24319 7.49604 7.75011 7.86411 8.01192 8.40410 9.06922 9.61563 11.06237 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.014773 B = 0.009577 C = 0.009089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.905564 B = 2922.916617 C = 3080.026369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 C -0.139 4.139 4 C -0.128 4.128 5 C -0.027 4.027 6 Cl -0.074 7.074 7 C -0.011 4.011 8 C 0.087 3.913 9 H 0.078 0.922 10 C -0.489 4.489 11 H 0.068 0.932 12 C 0.066 3.934 13 N -0.891 5.891 14 Si 0.885 3.115 15 H -0.281 1.281 16 H -0.289 1.289 17 H -0.274 1.274 18 C -0.118 4.118 19 C -0.203 4.203 20 C -0.168 4.168 21 C -0.072 4.072 22 C -0.123 4.123 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.260 0.740 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.106 0.894 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.418 4.864 -5.998 8.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.157 4.157 4 C -0.146 4.146 5 C -0.054 4.054 6 Cl -0.045 7.045 7 C -0.012 4.012 8 C 0.069 3.931 9 H 0.096 0.904 10 C -0.526 4.526 11 H 0.086 0.914 12 C -0.136 4.136 13 N -0.529 5.529 14 Si 0.713 3.287 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.198 1.198 18 C -0.136 4.136 19 C -0.240 4.240 20 C -0.205 4.205 21 C -0.073 4.073 22 C -0.179 4.179 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.372 4.760 -5.855 8.265 hybrid contribution 0.764 0.309 1.021 1.312 sum -2.608 5.070 -4.835 7.475 Atomic orbital electron populations 1.20780 0.92123 1.02253 1.01501 1.19717 0.95443 0.92975 1.01613 1.20577 0.93204 0.96966 1.04986 1.20817 0.94156 0.96327 1.03338 1.20646 0.84215 0.94315 1.06187 1.98292 1.10788 1.98689 1.96706 1.20482 0.92419 0.96500 0.91790 1.17817 0.94365 0.90528 0.90398 0.90435 1.21133 0.98104 1.39479 0.93922 0.91368 1.24933 0.95159 0.94660 0.98826 1.69833 1.19504 1.38727 1.24817 0.86688 0.81427 0.77507 0.83065 1.20755 1.21474 1.19836 1.22502 1.01714 0.92181 0.97246 1.22988 0.98908 1.05831 0.96294 1.22676 0.93231 1.02352 1.02226 1.19546 0.92862 0.94588 1.00291 1.20993 0.99337 0.95929 1.01602 0.91919 0.91239 0.92442 0.86820 0.86587 0.93016 0.89427 0.89623 0.90732 0.90775 0.88591 0.92671 0.87555 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.60 36.01 0.35 -1.21 16 2 C -0.10 -1.76 5.88 -104.62 -0.62 -2.37 16 3 C -0.14 -2.40 9.70 -39.59 -0.38 -2.79 16 4 C -0.13 -2.37 9.83 -39.55 -0.39 -2.76 16 5 C -0.03 -0.57 5.92 -39.50 -0.23 -0.81 16 6 Cl -0.07 -1.51 23.48 -51.86 -1.22 -2.73 16 7 C -0.01 -0.24 4.78 -104.58 -0.50 -0.73 16 8 C 0.09 2.03 1.90 -92.93 -0.18 1.85 16 9 H 0.08 1.94 4.55 -51.93 -0.24 1.70 16 10 C -0.49 -12.55 6.37 -34.44 -0.22 -12.77 16 11 H 0.07 1.78 6.32 -52.48 -0.33 1.45 16 12 C 0.07 1.75 5.45 -17.82 -0.10 1.65 16 13 N -0.89 -24.12 12.13 55.43 0.67 -23.45 16 14 Si 0.88 21.31 29.54 -169.99 -5.02 16.29 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 18 C -0.12 -2.46 4.50 -90.62 -0.41 -2.87 16 19 C -0.20 -3.72 10.18 -26.73 -0.27 -3.99 16 20 C -0.17 -3.25 9.88 -26.74 -0.26 -3.51 16 21 C -0.07 -1.49 5.88 -104.63 -0.62 -2.10 16 22 C -0.12 -2.34 8.94 36.00 0.32 -2.01 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 0.97 5.89 -51.93 -0.31 0.67 16 25 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 26 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 27 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.09 1.82 6.37 -51.93 -0.33 1.49 16 30 H 0.09 1.57 8.05 -51.93 -0.42 1.15 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.10 2.00 8.14 -51.93 -0.42 1.58 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.11 2.36 5.63 -51.93 -0.29 2.06 16 36 H 0.05 0.92 5.74 -51.93 -0.30 0.62 16 LS Contribution 301.04 15.07 4.54 4.54 Total: -1.00 -26.90 301.04 -9.26 -36.17 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -4.73 Total: 3.60 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: -3.51 Total: -34.42 kcal Atomic # 7 Polarization: -24.12 SS G_CDS: 0.67 Total: -23.45 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -1.22 Total: -2.73 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.90 -9.26 -36.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260447476.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.481 kcal (2) G-P(sol) polarization free energy of solvation -26.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds