Wall clock time and date at job start Mon Mar 30 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38264 * 119.98447 * 2 1 4 4 C 1.38193 * 120.01570 * 179.97438 * 3 2 1 5 5 C 1.38373 * 119.98488 * 0.02562 * 4 3 2 6 6 Cl 1.73595 * 120.01648 * 180.02562 * 5 4 3 7 7 C 1.38332 * 119.97326 * 0.27926 * 5 4 3 8 8 C 1.50706 * 120.01023 * 179.72017 * 7 5 4 9 9 H 1.08996 * 109.47164 * 174.74303 * 8 7 5 10 10 C 1.50697 * 109.46482 * 54.74504 * 8 7 5 11 11 H 1.08004 * 119.99917 * 269.97347 * 10 8 7 12 12 C 1.37879 * 120.00066 * 89.97914 * 10 8 7 13 13 N 1.31509 * 119.99899 * 6.06485 * 12 10 8 14 14 Si 1.86802 * 120.00119 * 186.06532 * 12 10 8 15 15 H 1.48505 * 109.46989 * 89.99755 * 14 12 10 16 16 H 1.48493 * 109.47313 * 209.99698 * 14 12 10 17 17 H 1.48506 * 109.47036 * 330.00271 * 14 12 10 18 18 C 1.52995 * 109.46988 * 294.74823 * 8 7 5 19 19 C 1.53003 * 117.49716 * 248.96420 * 18 8 7 20 20 C 1.52995 * 59.99944 * 252.51116 * 19 18 8 21 21 C 1.38215 * 119.98785 * 180.02562 * 2 1 3 22 22 C 1.50692 * 119.99660 * 359.97438 * 21 2 1 23 23 H 1.08996 * 109.46960 * 90.00062 * 1 2 3 24 24 H 1.09002 * 109.46232 * 209.99544 * 1 2 3 25 25 H 1.08999 * 109.47148 * 329.99466 * 1 2 3 26 26 H 1.08001 * 119.99484 * 0.02562 * 3 2 1 27 27 H 1.07997 * 120.00554 * 180.02562 * 4 3 2 28 28 H 0.97009 * 119.99981 * 179.97438 * 13 12 10 29 29 H 1.08997 * 115.55218 * 34.67567 * 18 8 7 30 30 H 1.08998 * 117.49612 * 0.02562 * 19 18 8 31 31 H 1.09002 * 117.49937 * 145.02290 * 19 18 8 32 32 H 1.09000 * 117.50035 * 252.50915 * 20 19 18 33 33 H 1.08996 * 117.52110 * 107.48419 * 20 19 18 34 34 H 1.09004 * 109.47677 * 95.60871 * 22 21 2 35 35 H 1.08999 * 109.47348 * 215.61012 * 22 21 2 36 36 H 1.09001 * 109.47040 * 335.61109 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5800 1.1983 0.0005 5 6 4.2722 0.0002 0.0005 6 17 6.0081 0.0002 0.0019 7 6 3.5803 -1.1977 -0.0058 8 6 4.3334 -2.5031 -0.0122 9 1 3.6285 -3.3296 0.0774 10 6 5.2943 -2.5341 1.1482 11 1 6.3005 -2.1613 1.0263 12 6 4.8889 -3.0387 2.3657 13 7 3.7060 -3.6013 2.4833 14 14 6.0197 -2.9231 3.8480 15 1 5.7616 -1.6511 4.5695 16 1 5.7628 -4.0688 4.7571 17 1 7.4338 -2.9574 3.3957 18 6 5.1118 -2.6363 -1.3226 19 6 4.6455 -3.7026 -2.3159 20 6 5.9399 -3.9066 -1.5263 21 6 2.1979 -1.1971 -0.0005 22 6 1.4441 -2.5019 -0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3632 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6577 2.1327 0.0004 27 1 4.1195 2.1339 0.0010 28 1 3.4210 -3.9567 3.3397 29 1 5.5078 -1.7065 -1.7308 30 1 3.7839 -4.3087 -2.0360 31 1 4.7345 -3.4743 -3.3780 32 1 6.8806 -3.8125 -2.0688 33 1 5.9306 -4.6471 -0.7265 34 1 1.3488 -2.8667 -1.0233 35 1 1.9860 -3.2347 0.5975 36 1 0.4520 -2.3484 0.4242 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260447476.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:32 Heat of formation + Delta-G solvation = 17.434661 kcal Electronic energy + Delta-G solvation = -18352.957894 eV Core-core repulsion = 15634.623698 eV Total energy + Delta-G solvation = -2718.334196 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.65473 -38.15011 -37.06476 -34.89995 -33.82003 -33.17043 -29.77823 -27.76875 -26.97554 -25.47083 -23.00869 -22.23474 -21.63207 -20.48326 -18.38624 -17.24873 -16.68761 -16.54720 -16.11960 -15.29944 -15.09343 -14.59727 -14.22340 -13.96626 -13.75206 -13.54420 -13.39768 -13.29436 -13.04130 -12.85233 -12.57769 -12.52340 -12.21180 -11.95412 -11.79726 -11.70437 -11.55240 -11.36728 -10.94618 -10.70759 -10.39889 -10.17986 -9.19415 -9.00871 -8.02482 -6.01946 0.51395 0.70210 1.38338 1.42080 1.48824 1.65711 2.47269 2.93983 3.25736 3.34127 4.04999 4.11465 4.16613 4.32781 4.42797 4.45749 4.48703 4.61302 4.76978 4.85816 4.88408 4.97289 4.98617 5.04572 5.11113 5.22134 5.27605 5.40040 5.46062 5.49589 5.59410 5.62130 5.70043 5.89145 5.97801 6.13081 6.31284 6.51631 7.07546 7.59319 9.05101 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.014773 B = 0.009577 C = 0.009089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.905564 B = 2922.916617 C = 3080.026369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C -0.133 4.133 4 C -0.130 4.130 5 C -0.051 4.051 6 Cl -0.080 7.080 7 C -0.040 4.040 8 C 0.092 3.908 9 H 0.054 0.946 10 C -0.485 4.485 11 H 0.059 0.941 12 C 0.022 3.978 13 N -0.911 5.911 14 Si 0.926 3.074 15 H -0.286 1.286 16 H -0.287 1.287 17 H -0.272 1.272 18 C -0.137 4.137 19 C -0.181 4.181 20 C -0.169 4.169 21 C -0.096 4.096 22 C -0.115 4.115 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.153 0.847 27 H 0.139 0.861 28 H 0.256 0.744 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.479 6.436 -6.959 10.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.149 4.149 5 C -0.077 4.077 6 Cl -0.051 7.051 7 C -0.041 4.041 8 C 0.074 3.926 9 H 0.072 0.928 10 C -0.523 4.523 11 H 0.077 0.923 12 C -0.176 4.176 13 N -0.552 5.552 14 Si 0.754 3.246 15 H -0.213 1.213 16 H -0.213 1.213 17 H -0.197 1.197 18 C -0.155 4.155 19 C -0.218 4.218 20 C -0.206 4.206 21 C -0.096 4.096 22 C -0.171 4.171 23 H 0.101 0.899 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.170 0.830 27 H 0.157 0.843 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.423 6.331 -6.821 10.304 hybrid contribution 1.059 -0.118 1.259 1.649 sum -3.364 6.213 -5.562 8.992 Atomic orbital electron populations 1.20842 0.89158 1.03295 1.03089 1.20180 0.97670 0.92230 0.99808 1.21054 0.92811 0.98331 1.02891 1.21162 0.95056 0.96274 1.02392 1.20876 0.84144 0.95071 1.07654 1.98276 1.11316 1.98708 1.96835 1.20457 0.93459 0.96194 0.94007 1.17619 0.93623 0.90716 0.90656 0.92795 1.21332 0.98150 1.38081 0.94769 0.92286 1.25454 0.96193 0.95326 1.00647 1.69946 1.20444 1.40036 1.24725 0.86041 0.80349 0.77054 0.81170 1.21281 1.21308 1.19656 1.22409 1.02924 0.92839 0.97330 1.23015 0.97957 1.03632 0.97219 1.22670 0.94803 1.00955 1.02199 1.19815 0.92576 0.96101 1.01145 1.20890 0.99664 0.94771 1.01789 0.89894 0.91398 0.90221 0.82961 0.84321 0.93481 0.89413 0.90031 0.87947 0.88650 0.90770 0.91520 0.91038 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.64 9.60 71.24 0.68 -1.95 16 2 C -0.10 -3.30 5.88 -19.86 -0.12 -3.42 16 3 C -0.13 -4.14 9.70 22.27 0.22 -3.92 16 4 C -0.13 -4.55 9.83 22.29 0.22 -4.33 16 5 C -0.05 -2.13 5.92 22.32 0.13 -1.99 16 6 Cl -0.08 -3.28 23.48 -2.72 -0.06 -3.34 16 7 C -0.04 -1.78 4.78 -19.84 -0.09 -1.88 16 8 C 0.09 4.38 1.90 -12.29 -0.02 4.36 16 9 H 0.05 2.80 4.55 -2.39 -0.01 2.79 16 10 C -0.49 -25.45 6.37 25.60 0.16 -25.29 16 11 H 0.06 3.14 6.32 -2.91 -0.02 3.12 16 12 C 0.02 1.21 5.45 84.66 0.46 1.68 16 13 N -0.91 -50.81 12.13 21.45 0.26 -50.55 16 14 Si 0.93 44.42 29.54 68.60 2.03 46.45 16 15 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 16 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 17 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 18 C -0.14 -5.70 4.50 -10.80 -0.05 -5.75 16 19 C -0.18 -6.46 10.18 30.59 0.31 -6.14 16 20 C -0.17 -6.52 9.88 30.59 0.30 -6.21 16 21 C -0.10 -3.87 5.88 -19.87 -0.12 -3.98 16 22 C -0.12 -4.36 8.94 71.23 0.64 -3.72 16 23 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.07 1.70 5.89 -2.39 -0.01 1.68 16 25 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16 26 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 27 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 28 H 0.26 13.89 8.31 -92.70 -0.77 13.12 16 29 H 0.09 3.63 6.37 -2.39 -0.02 3.62 16 30 H 0.08 2.96 8.05 -2.39 -0.02 2.94 16 31 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 32 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.07 3.26 5.63 -2.39 -0.01 3.25 16 36 H 0.07 2.43 5.74 -2.39 -0.01 2.41 16 Total: -1.00 -58.65 301.04 6.03 -52.62 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 1.08 Total: 17.39 kcal Atomic # 6 Polarization: -65.30 SS G_CDS: 2.73 Total: -62.57 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.26 Total: -50.55 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 17 Polarization: -3.28 SS G_CDS: -0.06 Total: -3.34 kcal Total: -58.65 6.03 -52.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260447476.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.058 kcal (2) G-P(sol) polarization free energy of solvation -58.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds