Wall clock time and date at job start Mon Mar 30 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38235 * 119.99420 * 2 1 4 4 C 1.38338 * 119.98459 * 180.27254 * 3 2 1 5 5 Cl 1.73602 * 120.01011 * 179.77219 * 4 3 2 6 6 C 1.38371 * 119.97338 * 359.74583 * 4 3 2 7 7 C 1.38190 * 119.98574 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.98957 * 179.97438 * 7 6 4 9 9 H 1.09000 * 109.46887 * 181.49476 * 8 7 6 10 10 C 1.50702 * 109.47114 * 301.49380 * 8 7 6 11 11 H 1.08000 * 119.99687 * 57.33938 * 10 8 7 12 12 C 1.37878 * 120.00206 * 237.33570 * 10 8 7 13 13 N 1.31513 * 119.99962 * 172.52960 * 12 10 8 14 14 Si 1.86797 * 119.99958 * 352.53463 * 12 10 8 15 15 H 1.48498 * 109.47506 * 86.85965 * 14 12 10 16 16 H 1.48502 * 109.47018 * 206.86357 * 14 12 10 17 17 H 1.48504 * 109.46983 * 326.86110 * 14 12 10 18 18 C 1.52996 * 109.47130 * 61.49790 * 8 7 6 19 19 C 1.53001 * 117.49856 * 128.49828 * 18 8 7 20 20 C 1.53000 * 117.50053 * 59.87157 * 18 8 7 21 21 C 1.38224 * 119.99238 * 179.74787 * 2 1 3 22 22 C 1.50699 * 119.98660 * 359.97438 * 21 2 1 23 23 H 1.08998 * 109.46735 * 270.25039 * 1 2 3 24 24 H 1.08994 * 109.46722 * 30.25358 * 1 2 3 25 25 H 1.08994 * 109.46776 * 150.24999 * 1 2 3 26 26 H 1.08000 * 120.01129 * 0.04316 * 3 2 1 27 27 H 1.07998 * 120.00375 * 180.02562 * 6 4 3 28 28 H 0.97000 * 120.00328 * 179.97438 * 13 12 10 29 29 H 1.08999 * 115.54935 * 274.20286 * 18 8 7 30 30 H 1.09000 * 117.49902 * 359.97438 * 19 18 8 31 31 H 1.09000 * 117.50160 * 145.01902 * 19 18 8 32 32 H 1.08994 * 117.50037 * 214.97370 * 20 18 8 33 33 H 1.09000 * 117.49774 * 0.02562 * 20 18 8 34 34 H 1.08998 * 109.47126 * 264.54299 * 22 21 2 35 35 H 1.08998 * 109.47205 * 144.54413 * 22 21 2 36 36 H 1.08998 * 109.46696 * 24.54485 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5815 1.1970 -0.0057 5 17 4.4500 2.7001 -0.0117 6 6 4.2726 -0.0018 -0.0061 7 6 3.5806 -1.1979 -0.0013 8 6 4.3332 -2.5036 -0.0023 9 1 3.6245 -3.3314 -0.0249 10 6 5.2221 -2.5701 -1.2174 11 1 5.9619 -1.8019 -1.3879 12 6 5.0910 -3.6115 -2.1114 13 7 5.7604 -3.5947 -3.2433 14 14 3.9625 -5.0463 -1.7149 15 1 2.5824 -4.7288 -2.1618 16 1 4.4429 -6.2629 -2.4180 17 1 3.9651 -5.2879 -0.2497 18 6 5.1895 -2.5996 1.2620 19 6 5.0586 -3.8669 2.1093 20 6 4.4675 -2.5474 2.6099 21 6 2.1980 -1.1971 0.0053 22 6 1.4440 -2.5019 0.0116 23 1 -0.3633 0.0045 1.0277 24 1 -0.3632 0.8877 -0.5177 25 1 -0.3633 -0.8922 -0.5099 26 1 1.6582 2.1326 0.0007 27 1 5.3525 -0.0025 -0.0101 28 1 5.6685 -4.3275 -3.8721 29 1 6.1734 -2.1348 1.1998 30 1 4.3621 -4.6320 1.7662 31 1 5.9566 -4.2362 2.6046 32 1 4.9766 -2.0487 3.4345 33 1 3.3824 -2.4450 2.5959 34 1 1.3473 -2.8607 1.0363 35 1 1.9868 -3.2381 -0.5813 36 1 0.4527 -2.3507 -0.4156 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260478518.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:37 Heat of formation + Delta-G solvation = 24.243103 kcal Electronic energy + Delta-G solvation = -18081.329204 eV Core-core repulsion = 15363.290244 eV Total energy + Delta-G solvation = -2718.038960 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.50934 -36.89705 -36.07215 -33.25675 -32.63068 -31.88055 -28.69250 -26.83675 -25.87653 -23.33060 -21.74945 -21.20039 -20.39301 -18.74536 -17.24268 -15.92615 -15.45212 -14.95363 -14.50075 -14.07657 -13.89167 -13.46856 -12.90633 -12.75054 -12.63085 -12.53504 -12.38583 -12.18078 -11.79016 -11.31139 -11.08300 -10.98869 -10.80799 -10.72056 -10.67145 -10.29356 -10.25826 -9.89194 -9.69970 -9.14084 -9.00747 -8.60766 -8.00224 -7.81880 -6.18106 -4.16640 1.73358 1.92034 2.59858 3.18342 3.26873 3.28893 4.17835 4.31229 4.53568 5.11663 5.14062 5.30019 5.43323 5.51779 5.52954 5.66234 5.69607 5.73273 5.75087 5.95905 5.98494 6.06306 6.12391 6.17657 6.26780 6.35153 6.49227 6.55718 6.60649 6.69766 6.81443 6.88589 6.97265 7.13940 7.36133 7.47913 7.63626 8.40675 8.87167 9.43376 10.94596 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.007835 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.689411 B = 3572.920017 C = 3769.824562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.081 4.081 3 C -0.136 4.136 4 C -0.033 4.033 5 Cl -0.093 7.093 6 C -0.095 4.095 7 C -0.007 4.007 8 C 0.067 3.933 9 H 0.055 0.945 10 C -0.502 4.502 11 H 0.078 0.922 12 C 0.076 3.924 13 N -0.891 5.891 14 Si 0.865 3.135 15 H -0.273 1.273 16 H -0.288 1.288 17 H -0.258 1.258 18 C -0.113 4.113 19 C -0.186 4.186 20 C -0.199 4.199 21 C -0.096 4.096 22 C -0.122 4.122 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.120 0.880 27 H 0.129 0.871 28 H 0.265 0.735 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.211 5.049 8.481 12.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.081 4.081 3 C -0.155 4.155 4 C -0.060 4.060 5 Cl -0.065 7.065 6 C -0.114 4.114 7 C -0.008 4.008 8 C 0.048 3.952 9 H 0.073 0.927 10 C -0.539 4.539 11 H 0.096 0.904 12 C -0.127 4.127 13 N -0.528 5.528 14 Si 0.692 3.308 15 H -0.199 1.199 16 H -0.214 1.214 17 H -0.183 1.183 18 C -0.132 4.132 19 C -0.223 4.223 20 C -0.236 4.236 21 C -0.097 4.097 22 C -0.178 4.178 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.138 0.862 27 H 0.147 0.853 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.085 5.071 8.285 12.638 hybrid contribution -0.316 -0.608 -0.010 0.685 sum -8.400 4.463 8.276 12.609 Atomic orbital electron populations 1.20797 0.91536 1.02554 1.01885 1.19497 0.95460 0.92056 1.01082 1.20565 0.91789 0.97779 1.05329 1.20845 0.92106 0.86328 1.06695 1.98317 1.77330 1.33622 1.97211 1.20816 1.00547 0.89739 1.00269 1.20257 0.92104 0.96483 0.91968 1.18065 0.93780 0.90176 0.93180 0.92722 1.20844 1.18504 1.10379 1.04196 0.90384 1.25050 0.95334 0.97865 0.94403 1.69893 1.42235 1.32338 1.08296 0.87093 0.81398 0.82917 0.79343 1.19887 1.21418 1.18327 1.22692 1.00430 0.99360 0.90700 1.22918 1.02501 0.91710 1.05213 1.22914 0.99747 1.01647 0.99300 1.19647 0.93565 0.94405 1.02051 1.20969 0.99680 0.95203 1.01936 0.91543 0.91974 0.91165 0.86173 0.85260 0.92458 0.88407 0.89528 0.89822 0.90071 0.89759 0.91603 0.91030 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.59 36.01 0.35 -1.02 16 2 C -0.08 -1.31 5.88 -104.63 -0.62 -1.92 16 3 C -0.14 -2.21 9.49 -39.55 -0.38 -2.59 16 4 C -0.03 -0.60 6.32 -39.50 -0.25 -0.84 16 5 Cl -0.09 -1.49 28.96 -51.86 -1.50 -2.99 16 6 C -0.10 -1.88 8.70 -39.55 -0.34 -2.23 16 7 C -0.01 -0.15 4.42 -104.63 -0.46 -0.61 16 8 C 0.07 1.47 1.86 -92.92 -0.17 1.30 16 9 H 0.05 1.20 2.28 -51.93 -0.12 1.09 16 10 C -0.50 -13.29 8.43 -34.44 -0.29 -13.58 16 11 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 12 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 13 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 14 Si 0.86 20.36 25.72 -169.99 -4.37 15.99 16 15 H -0.27 -6.23 6.87 56.52 0.39 -5.84 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.26 -5.70 5.86 56.52 0.33 -5.37 16 18 C -0.11 -2.24 4.82 -90.62 -0.44 -2.67 16 19 C -0.19 -3.32 10.18 -26.73 -0.27 -3.59 16 20 C -0.20 -3.34 9.87 -26.73 -0.26 -3.61 16 21 C -0.10 -1.77 5.88 -104.62 -0.62 -2.38 16 22 C -0.12 -2.02 8.92 36.01 0.32 -1.70 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 25 H 0.07 0.83 5.89 -51.93 -0.31 0.52 16 26 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.13 2.62 7.85 -52.49 -0.41 2.21 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.10 1.97 8.11 -51.93 -0.42 1.55 16 30 H 0.09 1.59 7.13 -51.93 -0.37 1.22 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.35 4.73 -51.93 -0.25 1.11 16 36 H 0.07 0.92 5.74 -51.93 -0.30 0.62 16 LS Contribution 303.02 15.07 4.57 4.57 Total: -1.00 -28.02 303.02 -8.82 -36.84 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -4.76 Total: 4.60 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: -3.53 Total: -33.44 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.77 Total: -25.56 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.37 Total: 15.99 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -1.50 Total: -2.99 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.02 -8.82 -36.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260478518.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.082 kcal (2) G-P(sol) polarization free energy of solvation -28.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds