Wall clock time and date at job start Mon Mar 30 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38235 * 119.99420 * 2 1 4 4 C 1.38338 * 119.98459 * 180.27254 * 3 2 1 5 5 Cl 1.73602 * 120.01011 * 179.77219 * 4 3 2 6 6 C 1.38371 * 119.97338 * 359.74583 * 4 3 2 7 7 C 1.38190 * 119.98574 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.98957 * 179.97438 * 7 6 4 9 9 H 1.09000 * 109.46887 * 181.49476 * 8 7 6 10 10 C 1.50702 * 109.47114 * 301.49380 * 8 7 6 11 11 H 1.08000 * 119.99687 * 57.33938 * 10 8 7 12 12 C 1.37878 * 120.00206 * 237.33570 * 10 8 7 13 13 N 1.31513 * 119.99962 * 172.52960 * 12 10 8 14 14 Si 1.86797 * 119.99958 * 352.53463 * 12 10 8 15 15 H 1.48498 * 109.47506 * 86.85965 * 14 12 10 16 16 H 1.48502 * 109.47018 * 206.86357 * 14 12 10 17 17 H 1.48504 * 109.46983 * 326.86110 * 14 12 10 18 18 C 1.52996 * 109.47130 * 61.49790 * 8 7 6 19 19 C 1.53001 * 117.49856 * 128.49828 * 18 8 7 20 20 C 1.53000 * 117.50053 * 59.87157 * 18 8 7 21 21 C 1.38224 * 119.99238 * 179.74787 * 2 1 3 22 22 C 1.50699 * 119.98660 * 359.97438 * 21 2 1 23 23 H 1.08998 * 109.46735 * 270.25039 * 1 2 3 24 24 H 1.08994 * 109.46722 * 30.25358 * 1 2 3 25 25 H 1.08994 * 109.46776 * 150.24999 * 1 2 3 26 26 H 1.08000 * 120.01129 * 0.04316 * 3 2 1 27 27 H 1.07998 * 120.00375 * 180.02562 * 6 4 3 28 28 H 0.97000 * 120.00328 * 179.97438 * 13 12 10 29 29 H 1.08999 * 115.54935 * 274.20286 * 18 8 7 30 30 H 1.09000 * 117.49902 * 359.97438 * 19 18 8 31 31 H 1.09000 * 117.50160 * 145.01902 * 19 18 8 32 32 H 1.08994 * 117.50037 * 214.97370 * 20 18 8 33 33 H 1.09000 * 117.49774 * 0.02562 * 20 18 8 34 34 H 1.08998 * 109.47126 * 264.54299 * 22 21 2 35 35 H 1.08998 * 109.47205 * 144.54413 * 22 21 2 36 36 H 1.08998 * 109.46696 * 24.54485 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5815 1.1970 -0.0057 5 17 4.4500 2.7001 -0.0117 6 6 4.2726 -0.0018 -0.0061 7 6 3.5806 -1.1979 -0.0013 8 6 4.3332 -2.5036 -0.0023 9 1 3.6245 -3.3314 -0.0249 10 6 5.2221 -2.5701 -1.2174 11 1 5.9619 -1.8019 -1.3879 12 6 5.0910 -3.6115 -2.1114 13 7 5.7604 -3.5947 -3.2433 14 14 3.9625 -5.0463 -1.7149 15 1 2.5824 -4.7288 -2.1618 16 1 4.4429 -6.2629 -2.4180 17 1 3.9651 -5.2879 -0.2497 18 6 5.1895 -2.5996 1.2620 19 6 5.0586 -3.8669 2.1093 20 6 4.4675 -2.5474 2.6099 21 6 2.1980 -1.1971 0.0053 22 6 1.4440 -2.5019 0.0116 23 1 -0.3633 0.0045 1.0277 24 1 -0.3632 0.8877 -0.5177 25 1 -0.3633 -0.8922 -0.5099 26 1 1.6582 2.1326 0.0007 27 1 5.3525 -0.0025 -0.0101 28 1 5.6685 -4.3275 -3.8721 29 1 6.1734 -2.1348 1.1998 30 1 4.3621 -4.6320 1.7662 31 1 5.9566 -4.2362 2.6046 32 1 4.9766 -2.0487 3.4345 33 1 3.3824 -2.4450 2.5959 34 1 1.3473 -2.8607 1.0363 35 1 1.9868 -3.2381 -0.5813 36 1 0.4527 -2.3507 -0.4156 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260478518.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:36 Heat of formation + Delta-G solvation = 10.861259 kcal Electronic energy + Delta-G solvation = -18081.909485 eV Core-core repulsion = 15363.290244 eV Total energy + Delta-G solvation = -2718.619241 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.91438 -38.35981 -37.40650 -35.01027 -34.00681 -33.50964 -30.26558 -28.19383 -27.15790 -25.15948 -23.13800 -22.62009 -21.75308 -20.30119 -19.18673 -17.34227 -16.85992 -16.64799 -16.00314 -15.44647 -15.36278 -14.96766 -14.58526 -14.17464 -13.96099 -13.80643 -13.63549 -13.47598 -13.19971 -12.90398 -12.64384 -12.56463 -12.21777 -12.12716 -11.98801 -11.78305 -11.64718 -11.63677 -11.36622 -10.90178 -10.63760 -10.48889 -9.39007 -9.21926 -8.29137 -6.31431 0.34038 0.53316 1.23666 1.30641 1.35258 1.44032 2.33348 2.75962 3.01010 3.21519 3.86937 3.97007 4.11375 4.14653 4.23941 4.29333 4.33479 4.43100 4.52721 4.72267 4.77890 4.83274 4.90790 4.91514 4.93708 5.04141 5.09497 5.20565 5.26824 5.34253 5.40462 5.43099 5.50519 5.61139 5.65805 5.89707 6.09158 6.35450 6.73655 7.32047 8.87740 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.007835 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.689411 B = 3572.920017 C = 3769.824562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.075 4.075 3 C -0.131 4.131 4 C -0.041 4.041 5 Cl -0.081 7.081 6 C -0.118 4.118 7 C -0.033 4.033 8 C 0.073 3.927 9 H 0.059 0.941 10 C -0.499 4.499 11 H 0.030 0.970 12 C 0.014 3.986 13 N -0.948 5.948 14 Si 0.925 3.075 15 H -0.258 1.258 16 H -0.293 1.293 17 H -0.233 1.233 18 C -0.145 4.145 19 C -0.183 4.183 20 C -0.169 4.169 21 C -0.108 4.108 22 C -0.123 4.123 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.150 0.850 27 H 0.105 0.895 28 H 0.265 0.735 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.613 5.101 10.601 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.075 4.075 3 C -0.150 4.150 4 C -0.068 4.068 5 Cl -0.053 7.053 6 C -0.137 4.137 7 C -0.034 4.034 8 C 0.054 3.946 9 H 0.077 0.923 10 C -0.536 4.536 11 H 0.048 0.952 12 C -0.183 4.183 13 N -0.588 5.588 14 Si 0.749 3.251 15 H -0.183 1.183 16 H -0.220 1.220 17 H -0.156 1.156 18 C -0.164 4.164 19 C -0.219 4.219 20 C -0.206 4.206 21 C -0.108 4.108 22 C -0.179 4.179 23 H 0.107 0.893 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.167 0.833 27 H 0.123 0.877 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.496 5.141 10.438 16.356 hybrid contribution 0.791 -0.434 -0.643 1.109 sum -10.704 4.707 9.794 15.254 Atomic orbital electron populations 1.20900 0.88126 1.03880 1.03683 1.19971 0.97801 0.90972 0.98792 1.20963 0.91016 0.99310 1.03675 1.20957 0.93051 0.86173 1.06604 1.98315 1.77352 1.32457 1.97147 1.20709 0.99607 0.91050 1.02332 1.20151 0.93391 0.95558 0.94270 1.17911 0.93238 0.91506 0.91927 0.92270 1.21074 1.17971 1.08662 1.05940 0.95165 1.25928 0.97329 1.00931 0.94101 1.70063 1.45175 1.33578 1.09943 0.86125 0.79738 0.78737 0.80522 1.18255 1.21959 1.15645 1.22429 1.00029 1.02206 0.91711 1.23026 1.03274 0.91428 1.04209 1.22938 1.00066 1.00338 0.97258 1.19934 0.92716 0.96341 1.01796 1.21038 1.00374 0.93462 1.03029 0.89311 0.90194 0.90362 0.83263 0.87686 0.92647 0.90265 0.89611 0.88164 0.88122 0.88915 0.89519 0.93589 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 9.59 71.24 0.68 -1.46 16 2 C -0.08 -2.18 5.88 -19.87 -0.12 -2.30 16 3 C -0.13 -3.91 9.49 22.29 0.21 -3.70 16 4 C -0.04 -1.45 6.32 22.33 0.14 -1.31 16 5 Cl -0.08 -2.55 28.96 -2.72 -0.08 -2.63 16 6 C -0.12 -4.83 8.70 22.29 0.19 -4.63 16 7 C -0.03 -1.35 4.42 -19.87 -0.09 -1.44 16 8 C 0.07 3.25 1.86 -12.29 -0.02 3.22 16 9 H 0.06 2.55 2.28 -2.39 -0.01 2.55 16 10 C -0.50 -27.88 8.43 25.60 0.22 -27.67 16 11 H 0.03 1.91 7.84 -2.91 -0.02 1.89 16 12 C 0.01 0.81 5.47 84.66 0.46 1.28 16 13 N -0.95 -59.05 13.96 21.45 0.30 -58.75 16 14 Si 0.92 42.32 25.72 68.60 1.76 44.09 16 15 H -0.26 -11.07 6.87 99.48 0.68 -10.39 16 16 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 17 H -0.23 -9.57 5.86 99.48 0.58 -8.99 16 18 C -0.15 -5.76 4.82 -10.79 -0.05 -5.82 16 19 C -0.18 -6.13 10.18 30.60 0.31 -5.82 16 20 C -0.17 -5.29 9.87 30.60 0.30 -4.99 16 21 C -0.11 -3.72 5.88 -19.86 -0.12 -3.83 16 22 C -0.12 -3.67 8.92 71.24 0.64 -3.03 16 23 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.08 1.31 8.09 -2.39 -0.02 1.30 16 25 H 0.08 1.43 5.89 -2.39 -0.01 1.42 16 26 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 27 H 0.10 4.65 7.85 -2.91 -0.02 4.63 16 28 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 29 H 0.08 3.37 8.11 -2.39 -0.02 3.35 16 30 H 0.09 2.90 7.13 -2.39 -0.02 2.89 16 31 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.05 1.61 4.73 -2.39 -0.01 1.60 16 36 H 0.09 2.21 5.74 -2.39 -0.01 2.20 16 Total: -1.00 -64.58 303.02 5.68 -58.90 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.94 Total: 19.89 kcal Atomic # 6 Polarization: -64.26 SS G_CDS: 2.76 Total: -61.49 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.30 Total: -58.75 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.76 Total: 44.09 kcal Atomic # 17 Polarization: -2.55 SS G_CDS: -0.08 Total: -2.63 kcal Total: -64.58 5.68 -58.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260478518.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.763 kcal (2) G-P(sol) polarization free energy of solvation -64.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds