Wall clock time and date at job start Mon Mar 30 2020 06:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32565 * 1 3 3 C 1.50698 * 120.00445 * 2 1 4 4 C 1.47821 * 119.99787 * 180.02562 * 2 1 3 5 5 C 1.39539 * 120.12993 * 245.01832 * 4 2 1 6 6 C 1.38072 * 119.84021 * 180.02562 * 5 4 2 7 7 Cl 1.73602 * 119.94266 * 180.02562 * 6 5 4 8 8 C 1.38483 * 120.11682 * 359.97438 * 6 5 4 9 9 C 1.38308 * 120.27168 * 359.97438 * 8 6 5 10 10 C 1.50700 * 119.92030 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.46766 * 127.23043 * 10 9 8 12 12 C 1.53002 * 109.46882 * 247.22626 * 10 9 8 13 13 C 1.50693 * 109.46990 * 7.22705 * 10 9 8 14 14 H 1.08000 * 120.00016 * 242.36619 * 13 10 9 15 15 C 1.37882 * 120.00150 * 62.37556 * 13 10 9 16 16 N 1.31514 * 119.99875 * 185.76492 * 15 13 10 17 17 Si 1.86792 * 119.99892 * 5.76418 * 15 13 10 18 18 H 1.48506 * 109.47241 * 91.70594 * 17 15 13 19 19 H 1.48503 * 109.47290 * 211.70249 * 17 15 13 20 20 H 1.48501 * 109.47397 * 331.70676 * 17 15 13 21 21 C 1.38006 * 120.15340 * 0.02778 * 9 8 6 22 22 H 1.08000 * 119.99786 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.99706 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47552 * 270.01131 * 3 2 1 25 25 H 1.09007 * 109.46674 * 30.00252 * 3 2 1 26 26 H 1.08999 * 109.47206 * 150.00276 * 3 2 1 27 27 H 1.07995 * 120.08104 * 0.02562 * 5 4 2 28 28 H 1.07997 * 119.86534 * 180.02562 * 8 6 5 29 29 H 1.08990 * 109.47454 * 65.85989 * 11 10 9 30 30 H 1.09007 * 109.46991 * 185.86337 * 11 10 9 31 31 H 1.09002 * 109.46997 * 305.85752 * 11 10 9 32 32 H 1.08998 * 109.47031 * 60.00320 * 12 10 9 33 33 H 1.09007 * 109.46680 * 180.02562 * 12 10 9 34 34 H 1.08999 * 109.47149 * 299.99693 * 12 10 9 35 35 H 0.97000 * 119.99649 * 179.97438 * 16 15 13 36 36 H 1.07999 * 120.05293 * 179.72621 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0792 1.3050 0.0000 4 6 2.0647 -1.2802 -0.0006 5 6 2.8563 -1.6325 1.0932 6 6 3.5445 -2.8294 1.0861 7 17 4.5296 -3.2707 2.4458 8 6 3.4495 -3.6792 -0.0032 9 6 2.6654 -3.3352 -1.0894 10 6 2.5672 -4.2661 -2.2705 11 6 1.0947 -4.5414 -2.5817 12 6 3.2332 -3.6191 -3.4865 13 6 3.2633 -5.5629 -1.9471 14 1 4.1212 -5.8740 -2.5248 15 6 2.8050 -6.3524 -0.9138 16 7 3.4773 -7.4252 -0.5579 17 14 1.2291 -5.8984 -0.0196 18 1 0.0784 -6.5759 -0.6694 19 1 1.3220 -6.3309 1.3980 20 1 1.0338 -4.4273 -0.0766 21 6 1.9728 -2.1415 -1.0942 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 2.2608 1.6198 -1.0276 25 1 1.4901 2.0647 0.5139 26 1 3.0317 1.1746 0.5138 27 1 2.9306 -0.9705 1.9433 28 1 3.9892 -4.6146 -0.0043 29 1 0.6159 -3.6212 -2.9162 30 1 1.0239 -5.2940 -3.3671 31 1 0.5954 -4.9052 -1.6837 32 1 4.2822 -3.4229 -3.2647 33 1 3.1618 -4.2923 -4.3409 34 1 2.7297 -2.6811 -3.7204 35 1 3.1550 -7.9804 0.1693 36 1 1.3645 -1.8725 -1.9451 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260478698.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:18 Heat of formation + Delta-G solvation = 19.287026 kcal Electronic energy + Delta-G solvation = -18188.626370 eV Core-core repulsion = 15470.372498 eV Total energy + Delta-G solvation = -2718.253872 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91965 -37.87291 -37.44266 -35.37126 -34.03553 -30.97281 -30.59121 -28.19375 -27.97622 -27.20501 -24.04054 -23.51407 -21.09889 -19.80246 -18.26938 -17.40858 -17.10568 -16.23916 -16.14781 -15.40553 -15.15600 -15.04852 -14.84783 -14.31564 -14.19015 -13.92625 -13.79221 -13.26210 -13.01634 -12.89014 -12.70749 -12.48243 -12.26788 -12.18020 -12.07060 -12.01378 -11.95385 -11.44518 -11.04202 -10.95799 -10.62448 -10.10989 -9.46761 -9.26651 -8.32440 -6.32742 0.22587 0.36378 1.13500 1.25320 1.35452 1.38516 1.41429 2.29023 2.75370 3.04042 3.71114 3.93777 4.21798 4.23688 4.34470 4.41824 4.52824 4.61051 4.66123 4.75177 4.80252 4.88912 4.93677 4.97864 5.07737 5.12533 5.15990 5.18951 5.33738 5.39482 5.52435 5.55800 5.66906 5.73411 5.86853 5.92838 6.07587 6.35204 6.75259 7.32291 8.82807 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.016617 B = 0.009644 C = 0.007519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.661392 B = 2902.741324 C = 3722.847974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.097 4.097 3 C -0.110 4.110 4 C -0.046 4.046 5 C -0.119 4.119 6 C -0.047 4.047 7 Cl -0.085 7.085 8 C -0.124 4.124 9 C -0.038 4.038 10 C 0.057 3.943 11 C -0.142 4.142 12 C -0.112 4.112 13 C -0.504 4.504 14 H 0.040 0.960 15 C 0.039 3.961 16 N -0.940 5.940 17 Si 0.912 3.088 18 H -0.283 1.283 19 H -0.318 1.318 20 H -0.217 1.217 21 C -0.115 4.115 22 H 0.088 0.912 23 H 0.131 0.869 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.146 0.854 28 H 0.122 0.878 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.025 0.975 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.262 0.738 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.709 17.483 1.099 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.097 4.097 3 C -0.167 4.167 4 C -0.046 4.046 5 C -0.138 4.138 6 C -0.074 4.074 7 Cl -0.056 7.056 8 C -0.143 4.143 9 C -0.039 4.039 10 C 0.057 3.943 11 C -0.199 4.199 12 C -0.169 4.169 13 C -0.542 4.542 14 H 0.058 0.942 15 C -0.159 4.159 16 N -0.579 5.579 17 Si 0.742 3.258 18 H -0.211 1.211 19 H -0.247 1.247 20 H -0.140 1.140 21 C -0.133 4.133 22 H 0.107 0.893 23 H 0.149 0.851 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.164 0.836 28 H 0.139 0.861 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.599 17.307 1.321 18.238 hybrid contribution -0.112 -1.207 0.870 1.492 sum -5.711 16.100 2.190 17.223 Atomic orbital electron populations 1.24289 0.94243 1.02843 0.99601 1.20547 0.94784 0.92563 1.01831 1.20849 1.00015 0.92791 1.03022 1.19091 0.97075 0.95134 0.93328 1.21101 0.97760 0.95069 0.99856 1.21024 0.98943 0.97211 0.90177 1.98318 1.69686 1.93212 1.44389 1.21487 1.00351 0.99739 0.92716 1.20370 0.93372 0.94734 0.95376 1.17682 0.93834 0.91755 0.91067 1.22230 0.96181 1.01541 0.99921 1.21604 0.99396 0.99568 0.96324 1.21110 1.13790 1.04054 1.15221 0.94192 1.25553 0.98673 0.94504 0.97148 1.70029 1.40475 1.17328 1.30105 0.86677 0.81365 0.81683 0.76031 1.21063 1.24737 1.13996 1.21415 0.99942 0.93137 0.98828 0.89305 0.85137 0.90493 0.89689 0.92103 0.83631 0.86059 0.90807 0.92522 0.95612 0.94415 0.92830 0.91497 0.92852 0.83995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.43 13.95 66.67 0.93 -2.50 16 2 C -0.10 -2.19 5.44 -18.48 -0.10 -2.30 16 3 C -0.11 -1.88 10.02 71.24 0.71 -1.16 16 4 C -0.05 -1.39 5.31 -20.12 -0.11 -1.49 16 5 C -0.12 -3.85 9.47 22.54 0.21 -3.64 16 6 C -0.05 -1.82 6.31 22.29 0.14 -1.68 16 7 Cl -0.08 -3.08 28.95 -2.72 -0.08 -3.16 16 8 C -0.12 -5.53 6.56 22.34 0.15 -5.39 16 9 C -0.04 -1.54 2.52 -19.90 -0.05 -1.59 16 10 C 0.06 2.45 0.59 -53.68 -0.03 2.42 16 11 C -0.14 -5.51 7.38 71.98 0.53 -4.98 16 12 C -0.11 -4.07 8.29 71.98 0.60 -3.47 16 13 C -0.50 -27.28 7.46 25.60 0.19 -27.09 16 14 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 15 C 0.04 2.24 4.06 84.66 0.34 2.59 16 16 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 17 Si 0.91 45.28 22.13 68.60 1.52 46.80 16 18 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 19 H -0.32 -16.60 7.11 99.48 0.71 -15.90 16 20 H -0.22 -9.77 4.48 99.48 0.45 -9.33 16 21 C -0.12 -3.86 8.30 22.52 0.19 -3.67 16 22 H 0.09 1.96 8.05 -2.91 -0.02 1.94 16 23 H 0.13 1.82 8.05 -2.91 -0.02 1.80 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 1.08 8.07 -2.38 -0.02 1.06 16 26 H 0.06 1.09 8.03 -2.39 -0.02 1.07 16 27 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 28 H 0.12 6.39 5.53 -2.91 -0.02 6.37 16 29 H 0.07 2.28 7.25 -2.39 -0.02 2.26 16 30 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.03 1.07 2.78 -2.39 -0.01 1.06 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.07 1.97 7.84 -2.39 -0.02 1.95 16 35 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.14 4.05 7.19 -2.91 -0.02 4.03 16 Total: -1.00 -63.40 299.11 6.24 -57.16 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.80 Total: 11.01 kcal Atomic # 6 Polarization: -57.66 SS G_CDS: 3.70 Total: -53.95 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.30 Total: -57.86 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.52 Total: 46.80 kcal Atomic # 17 Polarization: -3.08 SS G_CDS: -0.08 Total: -3.16 kcal Total: -63.40 6.24 -57.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260478698.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.448 kcal (2) G-P(sol) polarization free energy of solvation -63.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds