Wall clock time and date at job start Mon Mar 30 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.21652 * 2 1 4 4 C 1.50631 * 109.25301 * 119.44579 * 2 1 3 5 5 C 1.38929 * 117.74800 * 282.86761 * 4 2 1 6 6 C 1.37935 * 120.56838 * 179.62771 * 5 4 2 7 7 C 1.38241 * 119.78966 * 359.48353 * 6 5 4 8 8 C 1.38046 * 119.75842 * 0.64972 * 7 6 5 9 9 Cl 1.73602 * 119.74630 * 179.73758 * 8 7 6 10 10 C 1.37634 * 122.56052 * 102.47254 * 4 2 1 11 11 C 1.50628 * 122.57355 * 0.87294 * 10 4 2 12 12 C 1.52737 * 110.57109 * 342.07306 * 11 10 4 13 13 C 1.52725 * 109.25494 * 240.55787 * 2 1 3 14 14 H 1.08999 * 109.67933 * 171.04573 * 13 2 1 15 15 C 1.50702 * 109.67814 * 50.50765 * 13 2 1 16 16 H 1.08002 * 120.00122 * 1.05026 * 15 13 2 17 17 C 1.37876 * 119.99978 * 181.05148 * 15 13 2 18 18 N 1.31516 * 119.99858 * 179.97438 * 17 15 13 19 19 Si 1.86797 * 120.00078 * 0.02562 * 17 15 13 20 20 H 1.48494 * 109.47521 * 89.99935 * 19 17 15 21 21 H 1.48505 * 109.46740 * 209.99879 * 19 17 15 22 22 H 1.48499 * 109.47140 * 329.99325 * 19 17 15 23 23 H 1.08999 * 109.47351 * 300.55765 * 1 2 3 24 24 H 1.09008 * 109.47070 * 60.55362 * 1 2 3 25 25 H 1.09002 * 109.47118 * 180.54990 * 1 2 3 26 26 H 1.08998 * 109.47447 * 179.44241 * 3 2 1 27 27 H 1.08993 * 109.47415 * 299.44461 * 3 2 1 28 28 H 1.09005 * 109.46963 * 59.44186 * 3 2 1 29 29 H 1.08002 * 119.71190 * 359.34109 * 5 4 2 30 30 H 1.08007 * 120.10353 * 179.72737 * 6 5 4 31 31 H 1.08005 * 120.12163 * 180.35433 * 7 6 5 32 32 H 1.08999 * 109.25524 * 102.34897 * 11 10 4 33 33 H 1.08994 * 109.26168 * 221.82382 * 11 10 4 34 34 H 1.09003 * 109.67993 * 170.88640 * 12 11 10 35 35 H 1.09000 * 109.68437 * 291.43468 * 12 11 10 36 36 H 0.97003 * 120.00050 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0335 1.4448 0.0000 4 6 2.0266 -0.6991 1.2384 5 6 1.9814 0.0001 2.4380 6 6 2.4143 -0.5868 3.6088 7 6 2.8876 -1.8855 3.5919 8 6 2.9363 -2.5816 2.4008 9 17 3.5371 -4.2102 2.3788 10 6 2.5074 -1.9886 1.2186 11 6 2.5950 -2.8021 -0.0461 12 6 1.7061 -2.2015 -1.1332 13 6 2.0336 -0.7087 -1.2556 14 1 3.1117 -0.5756 -1.3448 15 6 1.3490 -0.1369 -2.4703 16 1 0.6367 0.6675 -2.3601 17 6 1.6319 -0.6405 -3.7222 18 7 1.0340 -0.1418 -4.7821 19 14 2.8633 -2.0322 -3.9126 20 1 2.1563 -3.3348 -3.8210 21 1 3.5320 -1.9239 -5.2341 22 1 3.8805 -1.9441 -2.8344 23 1 -0.3634 0.5225 0.8849 24 1 -0.3634 0.5052 -0.8950 25 1 -0.3633 -1.0276 0.0099 26 1 3.1234 1.4497 0.0100 27 1 1.6761 1.9541 -0.8948 28 1 1.6597 1.9598 0.8850 29 1 1.6084 1.0136 2.4532 30 1 2.3799 -0.0347 4.5365 31 1 3.2226 -2.3523 4.5065 32 1 3.6280 -2.8161 -0.3936 33 1 2.2711 -3.8223 0.1595 34 1 1.9008 -2.6992 -2.0832 35 1 0.6580 -2.3263 -0.8610 36 1 1.2333 -0.4958 -5.6629 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260657196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:15 Heat of formation + Delta-G solvation = -10.868108 kcal Electronic energy + Delta-G solvation = -18495.479345 eV Core-core repulsion = 15775.917848 eV Total energy + Delta-G solvation = -2719.561497 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.51165 -38.34783 -37.22829 -34.94481 -34.45090 -31.60045 -30.62187 -28.28487 -27.97933 -25.81531 -23.95330 -23.00411 -21.80863 -19.62539 -18.64397 -17.48462 -17.07798 -16.21802 -16.11390 -15.64127 -15.29468 -14.77325 -14.70954 -14.41097 -14.19005 -13.79838 -13.40055 -13.26493 -12.84046 -12.79643 -12.60679 -12.49697 -12.39754 -12.32026 -12.01414 -11.96855 -11.61977 -11.56206 -11.29357 -10.82374 -10.62073 -10.52458 -9.51951 -9.48986 -8.23054 -6.22703 0.26978 0.41197 1.21537 1.28723 1.35469 1.43983 2.34965 2.73110 3.11704 3.71205 3.74255 4.02867 4.12360 4.16518 4.29283 4.44719 4.49978 4.51854 4.61877 4.65761 4.81848 4.93127 4.94691 5.02301 5.11018 5.12749 5.18939 5.21349 5.29654 5.42744 5.46432 5.51020 5.60277 5.75024 5.79947 5.84297 6.00263 6.41885 6.83920 7.41109 8.92380 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.022221 B = 0.008241 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.739419 B = 3397.035485 C = 4379.371250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.010 4.010 3 C -0.126 4.126 4 C -0.057 4.057 5 C -0.116 4.116 6 C -0.105 4.105 7 C -0.117 4.117 8 C -0.049 4.049 9 Cl -0.077 7.077 10 C -0.082 4.082 11 C -0.082 4.082 12 C -0.123 4.123 13 C 0.026 3.974 14 H 0.014 0.986 15 C -0.492 4.492 16 H 0.056 0.944 17 C 0.014 3.986 18 N -0.949 5.949 19 Si 0.931 3.069 20 H -0.271 1.271 21 H -0.304 1.304 22 H -0.252 1.252 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.042 0.958 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.146 0.854 30 H 0.165 0.835 31 H 0.153 0.847 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.064 0.936 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.667 -3.100 18.627 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.010 4.010 3 C -0.183 4.183 4 C -0.057 4.057 5 C -0.134 4.134 6 C -0.123 4.123 7 C -0.135 4.135 8 C -0.075 4.075 9 Cl -0.049 7.049 10 C -0.082 4.082 11 C -0.119 4.119 12 C -0.161 4.161 13 C 0.007 3.993 14 H 0.032 0.968 15 C -0.530 4.530 16 H 0.074 0.926 17 C -0.183 4.183 18 N -0.591 5.591 19 Si 0.760 3.240 20 H -0.197 1.197 21 H -0.232 1.232 22 H -0.176 1.176 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.163 0.837 30 H 0.182 0.818 31 H 0.171 0.829 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.711 -3.261 18.454 19.104 hybrid contribution 0.486 -0.911 -1.186 1.573 sum 4.197 -4.172 17.267 18.253 Atomic orbital electron populations 1.21784 0.93698 1.01043 1.01213 1.19247 0.95838 0.95125 0.90832 1.21812 1.00203 0.94564 1.01727 1.19790 0.97352 0.92577 0.95994 1.21575 0.99393 1.01019 0.91423 1.21368 0.97647 0.94152 0.99142 1.21222 1.00706 0.95217 0.96394 1.21092 1.04157 0.86997 0.95303 1.98330 1.86547 1.21130 1.98848 1.19535 0.99980 0.94727 0.93994 1.20533 1.00193 0.98585 0.92587 1.21952 0.99653 0.98170 0.96284 1.19119 0.95301 0.91632 0.93268 0.96767 1.21360 1.23389 1.17959 0.90292 0.92626 1.25706 0.97535 0.99028 0.95994 1.70023 1.45301 1.44698 0.99043 0.86106 0.80691 0.80636 0.76554 1.19742 1.23245 1.17567 0.91727 0.93161 0.93889 0.93596 0.93545 0.90583 0.83657 0.81759 0.82936 0.91621 0.90122 0.94423 0.91784 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.32 7.80 71.98 0.56 -3.76 16 2 C -0.01 -0.38 0.41 -53.04 -0.02 -0.40 16 3 C -0.13 -4.26 7.82 71.98 0.56 -3.69 16 4 C -0.06 -1.81 4.70 -19.86 -0.09 -1.90 16 5 C -0.12 -2.85 8.91 22.36 0.20 -2.65 16 6 C -0.11 -2.09 10.05 22.20 0.22 -1.86 16 7 C -0.12 -2.56 9.82 22.22 0.22 -2.34 16 8 C -0.05 -1.36 6.31 22.42 0.14 -1.21 16 9 Cl -0.08 -2.00 27.26 -2.72 -0.07 -2.07 16 10 C -0.08 -2.67 5.74 -19.84 -0.11 -2.78 16 11 C -0.08 -2.94 5.01 29.74 0.15 -2.79 16 12 C -0.12 -5.20 4.68 30.61 0.14 -5.06 16 13 C 0.03 1.15 0.91 -11.52 -0.01 1.14 16 14 H 0.01 0.68 7.19 -2.39 -0.02 0.66 16 15 C -0.49 -26.60 7.72 25.60 0.20 -26.40 16 16 H 0.06 3.25 5.89 -2.91 -0.02 3.23 16 17 C 0.01 0.78 5.45 84.65 0.46 1.25 16 18 N -0.95 -58.72 13.96 21.45 0.30 -58.42 16 19 Si 0.93 45.55 24.44 68.60 1.68 47.22 16 20 H -0.27 -12.77 6.80 99.48 0.68 -12.09 16 21 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 22 H -0.25 -11.62 6.55 99.48 0.65 -10.97 16 23 H 0.06 1.88 8.07 -2.39 -0.02 1.86 16 24 H 0.05 2.07 6.05 -2.38 -0.01 2.05 16 25 H 0.04 1.57 6.47 -2.39 -0.02 1.55 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.79 7.17 -2.39 -0.02 1.77 16 28 H 0.08 1.99 6.40 -2.38 -0.02 1.98 16 29 H 0.15 2.97 6.33 -2.91 -0.02 2.95 16 30 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 31 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 32 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.08 2.64 7.22 -2.39 -0.02 2.62 16 34 H 0.04 1.70 3.29 -2.39 -0.01 1.70 16 35 H 0.06 2.67 6.28 -2.39 -0.01 2.65 16 36 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -62.65 282.52 5.52 -57.12 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 1.00 Total: 8.61 kcal Atomic # 6 Polarization: -55.08 SS G_CDS: 2.62 Total: -52.47 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.30 Total: -58.42 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.68 Total: 47.22 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.07 Total: -2.07 kcal Total: -62.65 5.52 -57.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.254 kcal (2) G-P(sol) polarization free energy of solvation -62.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds