Wall clock time and date at job start Mon Mar 30 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.25090 * 2 1 4 4 C 1.50624 * 109.25699 * 119.47775 * 2 1 3 5 5 C 1.38927 * 117.73993 * 317.80044 * 4 2 1 6 6 C 1.37945 * 120.56877 * 180.56771 * 5 4 2 7 7 C 1.38237 * 119.78514 * 359.97438 * 6 5 4 8 8 C 1.38057 * 119.76259 * 359.87145 * 7 6 5 9 9 Cl 1.73595 * 119.74409 * 180.02562 * 8 7 6 10 10 C 1.37642 * 122.56591 * 138.13517 * 4 2 1 11 11 C 1.50629 * 122.56800 * 359.26948 * 10 4 2 12 12 C 1.52733 * 110.60367 * 17.71078 * 11 10 4 13 13 C 1.52815 * 109.25234 * 240.59247 * 2 1 3 14 14 H 1.09001 * 109.67146 * 308.26312 * 13 2 1 15 15 C 1.50699 * 109.73321 * 68.84299 * 13 2 1 16 16 H 1.08002 * 119.99705 * 53.87416 * 15 13 2 17 17 C 1.37878 * 119.99951 * 233.86116 * 15 13 2 18 18 N 1.31519 * 119.99515 * 173.14214 * 17 15 13 19 19 Si 1.86794 * 120.00229 * 353.14246 * 17 15 13 20 20 H 1.48500 * 109.47312 * 85.99605 * 19 17 15 21 21 H 1.48498 * 109.47061 * 205.99600 * 19 17 15 22 22 H 1.48504 * 109.46943 * 325.99634 * 19 17 15 23 23 H 1.08997 * 109.47228 * 300.52128 * 1 2 3 24 24 H 1.09001 * 109.47310 * 60.52464 * 1 2 3 25 25 H 1.09004 * 109.46962 * 180.52323 * 1 2 3 26 26 H 1.08997 * 109.47443 * 179.47200 * 3 2 1 27 27 H 1.09005 * 109.47639 * 299.47441 * 3 2 1 28 28 H 1.09000 * 109.47277 * 59.47486 * 3 2 1 29 29 H 1.08000 * 119.71467 * 0.58717 * 5 4 2 30 30 H 1.07998 * 120.10445 * 179.97438 * 6 5 4 31 31 H 1.08004 * 120.11822 * 179.85604 * 7 6 5 32 32 H 1.08996 * 109.25275 * 257.41610 * 11 10 4 33 33 H 1.09005 * 109.22068 * 137.97106 * 11 10 4 34 34 H 1.08998 * 109.68461 * 68.68470 * 12 11 10 35 35 H 1.08992 * 109.68141 * 189.20277 * 12 11 10 36 36 H 0.97006 * 119.99622 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0345 1.4444 0.0000 4 6 2.0268 -0.6997 1.2379 5 6 1.3801 -0.4289 2.4373 6 6 1.7943 -1.0285 3.6086 7 6 2.8616 -1.9069 3.5903 8 6 3.5039 -2.1802 2.3992 9 17 4.8437 -3.2838 2.3767 10 6 3.0867 -1.5777 1.2178 11 6 3.8284 -1.9245 -0.0465 12 6 3.5516 -0.8880 -1.1336 13 6 2.0339 -0.7084 -1.2568 14 1 1.5548 -1.6834 -1.3454 15 6 1.7183 0.1253 -2.4719 16 1 2.0359 1.1566 -2.5164 17 6 1.0245 -0.4287 -3.5268 18 7 0.6314 0.3304 -4.5263 19 14 0.6429 -2.2572 -3.5364 20 1 -0.6175 -2.5038 -2.7908 21 1 0.4883 -2.7232 -4.9378 22 1 1.7546 -2.9983 -2.8881 23 1 -0.3633 0.5219 0.8852 24 1 -0.3634 0.5057 -0.8946 25 1 -0.3633 -1.0277 0.0094 26 1 3.1244 1.4487 0.0095 27 1 1.6769 1.9543 -0.8947 28 1 1.6615 1.9596 0.8852 29 1 0.5458 0.2566 2.4527 30 1 1.2865 -0.8122 4.5368 31 1 3.1919 -2.3775 4.5046 32 1 3.5058 -2.9056 -0.3948 33 1 4.8983 -1.9507 0.1608 34 1 4.0126 0.0615 -0.8615 35 1 3.9584 -1.2347 -2.0835 36 1 0.1430 -0.0593 -5.2683 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260657202.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:17 Heat of formation + Delta-G solvation = -5.029408 kcal Electronic energy + Delta-G solvation = -18459.586392 eV Core-core repulsion = 15740.278080 eV Total energy + Delta-G solvation = -2719.308312 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.13821 -36.96069 -36.01317 -33.42436 -32.45025 -30.08262 -29.33954 -26.68588 -26.49276 -24.21554 -22.54351 -21.39668 -20.38604 -17.87320 -16.91417 -16.25956 -15.50614 -14.91735 -14.37853 -14.07969 -13.71590 -13.43617 -13.22028 -12.83693 -12.61351 -12.15107 -11.89447 -11.74166 -11.54397 -11.22166 -11.13968 -11.06632 -10.91628 -10.83052 -10.64433 -10.38042 -10.22491 -9.66733 -9.52149 -9.16917 -8.87720 -8.49082 -8.35036 -8.27821 -6.08938 -4.06355 1.40910 1.56733 2.33953 3.28000 3.37298 3.39961 3.87931 4.41607 4.96979 4.97718 5.19188 5.26406 5.46041 5.56530 5.65922 5.74863 5.84353 5.98844 6.02078 6.06812 6.24318 6.35350 6.41771 6.46146 6.51971 6.58377 6.66519 6.72070 6.74247 6.83242 7.03092 7.06684 7.14199 7.25655 7.32383 7.43889 7.77840 8.52385 8.97373 9.55642 11.03688 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.023559 B = 0.007566 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.239186 B = 3699.922411 C = 4261.777407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.018 4.018 3 C -0.125 4.125 4 C -0.039 4.039 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.125 4.125 8 C -0.040 4.040 9 Cl -0.083 7.083 10 C -0.060 4.060 11 C -0.088 4.088 12 C -0.113 4.113 13 C 0.025 3.975 14 H 0.035 0.965 15 C -0.502 4.502 16 H 0.080 0.920 17 C 0.074 3.926 18 N -0.899 5.899 19 Si 0.869 3.131 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.266 1.266 23 H 0.039 0.961 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.032 0.968 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.427 -3.499 14.107 14.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.018 4.018 3 C -0.182 4.182 4 C -0.039 4.039 5 C -0.135 4.135 6 C -0.138 4.138 7 C -0.144 4.144 8 C -0.067 4.067 9 Cl -0.054 7.054 10 C -0.060 4.060 11 C -0.125 4.125 12 C -0.151 4.151 13 C 0.006 3.994 14 H 0.053 0.947 15 C -0.540 4.540 16 H 0.098 0.902 17 C -0.128 4.128 18 N -0.537 5.537 19 Si 0.697 3.303 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.191 1.191 23 H 0.058 0.942 24 H 0.096 0.904 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.052 0.948 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.449 -3.595 13.913 14.778 hybrid contribution -0.139 -1.248 0.052 1.257 sum 3.309 -4.842 13.964 15.146 Atomic orbital electron populations 1.21843 0.94493 1.00810 1.01581 1.19614 0.95217 0.95322 0.91655 1.21852 1.00213 0.94818 1.01345 1.20061 0.93137 0.94618 0.96068 1.21407 1.00145 0.99972 0.92018 1.20932 0.96978 0.97601 0.98337 1.20814 0.97123 1.00145 0.96297 1.20999 0.93095 0.97331 0.95249 1.98325 1.46015 1.62239 1.98859 1.19648 0.96226 0.96124 0.94044 1.20685 0.98560 1.00587 0.92685 1.21870 1.00089 0.96953 0.96212 1.19230 0.91380 0.95846 0.92924 0.94659 1.20959 1.35120 0.99104 0.98787 0.90217 1.25050 0.94973 0.97127 0.95605 1.69907 1.38468 1.35323 1.10026 0.86975 0.79306 0.87111 0.76897 1.20254 1.21787 1.19105 0.94219 0.90429 0.93993 0.93468 0.90232 0.94850 0.85528 0.85787 0.85742 0.91064 0.91346 0.92390 0.91872 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 7.83 37.16 0.29 -2.13 16 2 C -0.02 -0.34 0.42 -155.79 -0.07 -0.40 16 3 C -0.13 -2.29 7.73 37.16 0.29 -2.00 16 4 C -0.04 -0.67 4.71 -104.62 -0.49 -1.16 16 5 C -0.12 -1.75 8.91 -39.43 -0.35 -2.10 16 6 C -0.12 -1.57 10.05 -39.69 -0.40 -1.97 16 7 C -0.13 -1.70 9.82 -39.65 -0.39 -2.08 16 8 C -0.04 -0.62 6.31 -39.36 -0.25 -0.87 16 9 Cl -0.08 -1.17 27.26 -51.86 -1.41 -2.58 16 10 C -0.06 -1.03 5.74 -104.58 -0.60 -1.63 16 11 C -0.09 -1.56 5.00 -28.05 -0.14 -1.70 16 12 C -0.11 -2.26 5.22 -26.70 -0.14 -2.40 16 13 C 0.03 0.55 1.26 -91.70 -0.12 0.44 16 14 H 0.04 0.82 4.86 -51.93 -0.25 0.57 16 15 C -0.50 -12.89 7.18 -34.44 -0.25 -13.14 16 16 H 0.08 2.21 6.55 -52.49 -0.34 1.86 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 18 N -0.90 -26.27 13.96 55.43 0.77 -25.49 16 19 Si 0.87 21.06 26.92 -169.99 -4.58 16.49 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.27 -6.26 6.85 56.52 0.39 -5.87 16 23 H 0.04 0.62 6.40 -51.93 -0.33 0.28 16 24 H 0.08 1.61 7.48 -51.93 -0.39 1.22 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.85 6.46 -51.93 -0.34 0.51 16 27 H 0.08 1.60 6.21 -51.93 -0.32 1.28 16 28 H 0.03 0.53 8.07 -51.93 -0.42 0.11 16 29 H 0.13 1.70 6.33 -52.49 -0.33 1.37 16 30 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.07 1.11 7.23 -51.93 -0.38 0.73 16 34 H 0.06 1.13 6.27 -51.93 -0.33 0.80 16 35 H 0.06 1.30 8.12 -51.93 -0.42 0.88 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 289.55 15.07 4.36 4.36 Total: -1.00 -27.43 289.55 -8.25 -35.68 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -4.69 Total: 0.79 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -2.71 Total: -29.24 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.77 Total: -25.49 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.58 Total: 16.49 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.41 Total: -2.58 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.43 -8.25 -35.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657202.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.651 kcal (2) G-P(sol) polarization free energy of solvation -27.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds