Wall clock time and date at job start Mon Mar 30 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.25090 * 2 1 4 4 C 1.50624 * 109.25699 * 119.47775 * 2 1 3 5 5 C 1.38927 * 117.73993 * 317.80044 * 4 2 1 6 6 C 1.37945 * 120.56877 * 180.56771 * 5 4 2 7 7 C 1.38237 * 119.78514 * 359.97438 * 6 5 4 8 8 C 1.38057 * 119.76259 * 359.87145 * 7 6 5 9 9 Cl 1.73595 * 119.74409 * 180.02562 * 8 7 6 10 10 C 1.37642 * 122.56591 * 138.13517 * 4 2 1 11 11 C 1.50629 * 122.56800 * 359.26948 * 10 4 2 12 12 C 1.52733 * 110.60367 * 17.71078 * 11 10 4 13 13 C 1.52815 * 109.25234 * 240.59247 * 2 1 3 14 14 H 1.09001 * 109.67146 * 308.26312 * 13 2 1 15 15 C 1.50699 * 109.73321 * 68.84299 * 13 2 1 16 16 H 1.08002 * 119.99705 * 53.87416 * 15 13 2 17 17 C 1.37878 * 119.99951 * 233.86116 * 15 13 2 18 18 N 1.31519 * 119.99515 * 173.14214 * 17 15 13 19 19 Si 1.86794 * 120.00229 * 353.14246 * 17 15 13 20 20 H 1.48500 * 109.47312 * 85.99605 * 19 17 15 21 21 H 1.48498 * 109.47061 * 205.99600 * 19 17 15 22 22 H 1.48504 * 109.46943 * 325.99634 * 19 17 15 23 23 H 1.08997 * 109.47228 * 300.52128 * 1 2 3 24 24 H 1.09001 * 109.47310 * 60.52464 * 1 2 3 25 25 H 1.09004 * 109.46962 * 180.52323 * 1 2 3 26 26 H 1.08997 * 109.47443 * 179.47200 * 3 2 1 27 27 H 1.09005 * 109.47639 * 299.47441 * 3 2 1 28 28 H 1.09000 * 109.47277 * 59.47486 * 3 2 1 29 29 H 1.08000 * 119.71467 * 0.58717 * 5 4 2 30 30 H 1.07998 * 120.10445 * 179.97438 * 6 5 4 31 31 H 1.08004 * 120.11822 * 179.85604 * 7 6 5 32 32 H 1.08996 * 109.25275 * 257.41610 * 11 10 4 33 33 H 1.09005 * 109.22068 * 137.97106 * 11 10 4 34 34 H 1.08998 * 109.68461 * 68.68470 * 12 11 10 35 35 H 1.08992 * 109.68141 * 189.20277 * 12 11 10 36 36 H 0.97006 * 119.99622 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0345 1.4444 0.0000 4 6 2.0268 -0.6997 1.2379 5 6 1.3801 -0.4289 2.4373 6 6 1.7943 -1.0285 3.6086 7 6 2.8616 -1.9069 3.5903 8 6 3.5039 -2.1802 2.3992 9 17 4.8437 -3.2838 2.3767 10 6 3.0867 -1.5777 1.2178 11 6 3.8284 -1.9245 -0.0465 12 6 3.5516 -0.8880 -1.1336 13 6 2.0339 -0.7084 -1.2568 14 1 1.5548 -1.6834 -1.3454 15 6 1.7183 0.1253 -2.4719 16 1 2.0359 1.1566 -2.5164 17 6 1.0245 -0.4287 -3.5268 18 7 0.6314 0.3304 -4.5263 19 14 0.6429 -2.2572 -3.5364 20 1 -0.6175 -2.5038 -2.7908 21 1 0.4883 -2.7232 -4.9378 22 1 1.7546 -2.9983 -2.8881 23 1 -0.3633 0.5219 0.8852 24 1 -0.3634 0.5057 -0.8946 25 1 -0.3633 -1.0277 0.0094 26 1 3.1244 1.4487 0.0095 27 1 1.6769 1.9543 -0.8947 28 1 1.6615 1.9596 0.8852 29 1 0.5458 0.2566 2.4527 30 1 1.2865 -0.8122 4.5368 31 1 3.1919 -2.3775 4.5046 32 1 3.5058 -2.9056 -0.3948 33 1 4.8983 -1.9507 0.1608 34 1 4.0126 0.0615 -0.8615 35 1 3.9584 -1.2347 -2.0835 36 1 0.1430 -0.0593 -5.2683 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260657202.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:17 Heat of formation + Delta-G solvation = -17.977374 kcal Electronic energy + Delta-G solvation = -18460.147858 eV Core-core repulsion = 15740.278080 eV Total energy + Delta-G solvation = -2719.869778 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.45452 -38.28557 -37.19041 -34.80879 -34.43496 -31.55370 -30.55781 -28.34517 -27.99661 -25.83188 -23.80820 -22.90195 -21.76360 -19.39250 -18.89130 -17.43136 -16.87529 -16.22878 -16.04107 -15.56101 -15.15150 -14.91172 -14.61554 -14.46136 -14.16439 -13.46480 -13.42216 -13.33069 -12.87460 -12.78761 -12.64281 -12.49916 -12.39632 -12.27846 -12.01870 -11.96554 -11.62915 -11.58875 -11.16781 -10.86518 -10.64315 -10.49890 -9.50380 -9.47955 -8.21820 -6.19956 0.27761 0.42308 1.22617 1.32141 1.36369 1.44537 2.37675 2.73838 3.13400 3.75047 3.82018 4.05902 4.13074 4.21516 4.34609 4.46876 4.52427 4.55699 4.67201 4.71115 4.85912 4.94722 4.95703 5.11100 5.12488 5.18228 5.20503 5.25645 5.34025 5.46492 5.47902 5.52648 5.65112 5.77484 5.83296 5.84880 6.01479 6.44021 6.86149 7.43784 8.94383 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.023559 B = 0.007566 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.239186 B = 3699.922411 C = 4261.777407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.016 4.016 3 C -0.118 4.118 4 C -0.058 4.058 5 C -0.120 4.120 6 C -0.107 4.107 7 C -0.118 4.118 8 C -0.049 4.049 9 Cl -0.076 7.076 10 C -0.083 4.083 11 C -0.080 4.080 12 C -0.111 4.111 13 C 0.022 3.978 14 H 0.024 0.976 15 C -0.486 4.486 16 H 0.049 0.951 17 C 0.020 3.980 18 N -0.948 5.948 19 Si 0.921 3.079 20 H -0.270 1.270 21 H -0.294 1.294 22 H -0.255 1.255 23 H 0.073 0.927 24 H 0.044 0.956 25 H 0.038 0.962 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.142 0.858 30 H 0.163 0.837 31 H 0.153 0.847 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.522 -4.662 17.719 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.016 4.016 3 C -0.175 4.175 4 C -0.059 4.059 5 C -0.137 4.137 6 C -0.125 4.125 7 C -0.137 4.137 8 C -0.076 4.076 9 Cl -0.047 7.047 10 C -0.083 4.083 11 C -0.117 4.117 12 C -0.148 4.148 13 C 0.003 3.997 14 H 0.042 0.958 15 C -0.524 4.524 16 H 0.067 0.933 17 C -0.177 4.177 18 N -0.589 5.589 19 Si 0.747 3.253 20 H -0.195 1.195 21 H -0.221 1.221 22 H -0.180 1.180 23 H 0.092 0.908 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.160 0.840 30 H 0.181 0.819 31 H 0.170 0.830 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.558 -4.767 17.546 18.527 hybrid contribution -0.114 -0.823 -0.975 1.281 sum 3.443 -5.590 16.571 17.825 Atomic orbital electron populations 1.21797 0.94315 1.00622 1.01643 1.19432 0.95399 0.95382 0.91396 1.21750 1.00018 0.94647 1.01127 1.19853 0.94305 0.95728 0.95971 1.21585 1.00238 1.00292 0.91635 1.21349 0.96178 0.95888 0.99048 1.21216 0.96486 0.99465 0.96499 1.21095 0.93637 0.97511 0.95308 1.98329 1.45610 1.61886 1.98846 1.19614 0.96916 0.97464 0.94349 1.20544 0.99653 0.99135 0.92363 1.21727 0.98399 0.97978 0.96736 1.19215 0.92830 0.94755 0.92896 0.95807 1.21182 1.33192 0.98114 0.99953 0.93314 1.25716 0.95626 1.00793 0.95557 1.70038 1.40680 1.37047 1.11146 0.86123 0.79619 0.82826 0.76722 1.19516 1.22067 1.17956 0.90782 0.93644 0.94314 0.93684 0.93238 0.92084 0.83999 0.81944 0.82977 0.91664 0.89998 0.92333 0.93336 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 7.83 71.98 0.56 -4.04 16 2 C -0.02 -0.59 0.42 -53.01 -0.02 -0.61 16 3 C -0.12 -4.29 7.73 71.98 0.56 -3.74 16 4 C -0.06 -1.89 4.71 -19.86 -0.09 -1.98 16 5 C -0.12 -3.07 8.91 22.37 0.20 -2.87 16 6 C -0.11 -2.21 10.05 22.20 0.22 -1.99 16 7 C -0.12 -2.63 9.82 22.23 0.22 -2.42 16 8 C -0.05 -1.35 6.31 22.42 0.14 -1.21 16 9 Cl -0.08 -1.91 27.26 -2.72 -0.07 -1.99 16 10 C -0.08 -2.68 5.74 -19.84 -0.11 -2.80 16 11 C -0.08 -2.74 5.00 29.74 0.15 -2.59 16 12 C -0.11 -4.44 5.22 30.61 0.16 -4.28 16 13 C 0.02 0.97 1.26 -11.49 -0.01 0.96 16 14 H 0.02 1.11 4.86 -2.39 -0.01 1.09 16 15 C -0.49 -25.98 7.18 25.60 0.18 -25.80 16 16 H 0.05 2.86 6.55 -2.91 -0.02 2.84 16 17 C 0.02 1.11 5.47 84.65 0.46 1.57 16 18 N -0.95 -57.82 13.96 21.45 0.30 -57.52 16 19 Si 0.92 44.31 26.92 68.60 1.85 46.16 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 22 H -0.26 -11.70 6.85 99.48 0.68 -11.02 16 23 H 0.07 2.13 6.40 -2.39 -0.02 2.11 16 24 H 0.04 1.91 7.48 -2.39 -0.02 1.90 16 25 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.04 1.61 6.46 -2.39 -0.02 1.60 16 27 H 0.05 2.06 6.21 -2.38 -0.01 2.05 16 28 H 0.06 1.84 8.07 -2.39 -0.02 1.82 16 29 H 0.14 3.14 6.33 -2.91 -0.02 3.13 16 30 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.08 2.53 7.23 -2.38 -0.02 2.52 16 34 H 0.06 2.30 6.27 -2.39 -0.01 2.29 16 35 H 0.05 2.03 8.12 -2.39 -0.02 2.01 16 36 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -61.17 289.55 5.74 -55.43 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 1.06 Total: 9.72 kcal Atomic # 6 Polarization: -54.41 SS G_CDS: 2.61 Total: -51.79 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.30 Total: -57.52 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.85 Total: 46.16 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.07 Total: -1.99 kcal Total: -61.17 5.74 -55.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657202.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.450 kcal (2) G-P(sol) polarization free energy of solvation -61.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds