Wall clock time and date at job start Mon Mar 30 2020 06:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21298 * 120.00118 * 2 1 4 4 C 1.46864 * 119.99872 * 180.02562 * 2 1 3 5 5 C 1.40036 * 120.11344 * 0.26777 * 4 2 1 6 6 C 1.37117 * 119.88334 * 180.23019 * 5 4 2 7 7 C 1.39080 * 120.11437 * 359.52048 * 6 5 4 8 8 O 1.35661 * 119.88619 * 180.25876 * 7 6 5 9 9 C 1.42909 * 116.99973 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.46870 * 179.97438 * 9 8 7 11 11 O 1.42895 * 109.47388 * 64.99585 * 10 9 8 12 12 C 1.42906 * 114.00306 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47279 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00117 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00034 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99837 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99898 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47397 * 60.00240 * 17 15 13 19 19 H 1.48508 * 109.46767 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47350 * 299.99734 * 17 15 13 21 21 C 1.39087 * 120.22860 * 0.22946 * 7 6 5 22 22 C 1.37108 * 120.11543 * 0.02562 * 21 7 6 23 23 H 1.09001 * 109.46860 * 239.99964 * 1 2 3 24 24 H 1.09002 * 109.47041 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47149 * 119.99678 * 1 2 3 26 26 H 1.08004 * 120.06199 * 0.03238 * 5 4 2 27 27 H 1.08002 * 119.94651 * 179.80050 * 6 5 4 28 28 H 1.08996 * 109.46968 * 299.99427 * 9 8 7 29 29 H 1.08994 * 109.47008 * 59.99466 * 9 8 7 30 30 H 1.09000 * 109.47059 * 185.00265 * 10 9 8 31 31 H 1.09006 * 109.47167 * 304.99955 * 10 9 8 32 32 H 1.09006 * 109.46830 * 300.00436 * 12 11 10 33 33 H 1.08996 * 109.47025 * 60.00236 * 12 11 10 34 34 H 0.96995 * 119.99919 * 179.97438 * 16 15 13 35 35 H 1.07999 * 119.93759 * 180.02562 * 21 7 6 36 36 H 1.08004 * 120.05991 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2413 -1.2719 -0.0006 5 6 1.5435 -2.4860 -0.0068 6 6 2.2338 -3.6707 -0.0025 7 6 3.6246 -3.6680 -0.0021 8 8 4.3029 -4.8428 -0.0032 9 6 5.7300 -4.7681 -0.0021 10 6 6.3147 -6.1819 -0.0029 11 8 5.9714 -6.8387 -1.2247 12 6 6.4723 -8.1731 -1.3280 13 6 6.0536 -8.7660 -2.6486 14 1 5.4642 -8.1822 -3.3401 15 6 6.4237 -10.0536 -2.9745 16 7 7.1427 -10.7640 -2.1331 17 14 5.9052 -10.7883 -4.6118 18 1 6.4543 -9.9660 -5.7195 19 1 6.4257 -12.1751 -4.7190 20 1 4.4228 -10.8085 -4.6981 21 6 4.3224 -2.4649 -0.0012 22 6 3.6417 -1.2747 -0.0002 23 1 -0.3633 -0.5139 0.8900 24 1 -0.3633 1.0277 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 0.4635 -2.4893 -0.0117 27 1 1.6966 -4.6077 -0.0040 28 1 6.0665 -4.2349 -0.8912 29 1 6.0653 -4.2370 0.8887 30 1 7.3995 -6.1264 0.0875 31 1 5.9083 -6.7437 0.8382 32 1 7.5605 -8.1585 -1.2653 33 1 6.0696 -8.7763 -0.5144 34 1 7.4027 -11.6700 -2.3622 35 1 5.4024 -2.4682 -0.0013 36 1 4.1845 -0.3410 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292744024.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:03 Heat of formation + Delta-G solvation = -126.220986 kcal Electronic energy + Delta-G solvation = -18532.335843 eV Core-core repulsion = 15367.063106 eV Total energy + Delta-G solvation = -3165.272737 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.42426 -40.27871 -38.74614 -37.85778 -34.97012 -32.68147 -32.44911 -31.14923 -29.67159 -28.96778 -25.02906 -24.49080 -24.11059 -22.73110 -20.80332 -19.46635 -18.68363 -17.78969 -17.62908 -17.16528 -16.78046 -16.32398 -16.10506 -15.86134 -15.72639 -15.59631 -15.03295 -14.53881 -14.26835 -13.95495 -13.73129 -13.43297 -13.27917 -13.01067 -12.99295 -12.90311 -12.68460 -12.45432 -12.03921 -11.97382 -11.74977 -11.31977 -10.90967 -10.77425 -10.29134 -10.15639 -9.29756 -8.33914 -6.46460 -0.30705 0.33596 1.39598 1.42872 1.44191 1.52688 2.11599 2.33480 2.77238 2.99960 3.06233 3.18793 3.67590 3.80782 3.95286 4.09073 4.17704 4.22480 4.35373 4.39409 4.43386 4.58164 4.64283 4.71024 4.72177 4.83220 4.95681 5.07353 5.15191 5.24493 5.25979 5.40739 5.52235 5.65120 5.93240 6.32940 6.49336 6.58090 6.77621 7.25279 8.78106 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.034249 B = 0.003022 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.345537 B = 9262.141624 C = 9733.608456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.400 3.600 3 O -0.513 6.513 4 C -0.236 4.236 5 C -0.013 4.013 6 C -0.182 4.182 7 C 0.151 3.849 8 O -0.322 6.322 9 C 0.067 3.933 10 C 0.050 3.950 11 O -0.409 6.409 12 C 0.209 3.791 13 C -0.553 4.553 14 H 0.060 0.940 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.983 3.017 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.266 1.266 21 C -0.231 4.231 22 C -0.029 4.029 23 H 0.118 0.882 24 H 0.083 0.917 25 H 0.116 0.884 26 H 0.178 0.822 27 H 0.144 0.856 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.050 0.950 32 H -0.007 1.007 33 H -0.013 1.013 34 H 0.272 0.728 35 H 0.147 0.853 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.536 17.983 6.505 22.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.283 3.717 3 O -0.393 6.393 4 C -0.237 4.237 5 C -0.031 4.031 6 C -0.200 4.200 7 C 0.104 3.896 8 O -0.235 6.235 9 C -0.007 4.007 10 C -0.027 4.027 11 O -0.330 6.330 12 C 0.134 3.866 13 C -0.590 4.590 14 H 0.078 0.922 15 C -0.191 4.191 16 N -0.568 5.568 17 Si 0.805 3.195 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.191 1.191 21 C -0.249 4.249 22 C -0.048 4.048 23 H 0.136 0.864 24 H 0.102 0.898 25 H 0.134 0.866 26 H 0.195 0.805 27 H 0.162 0.838 28 H 0.094 0.906 29 H 0.130 0.870 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.010 0.990 33 H 0.005 0.995 34 H 0.081 0.919 35 H 0.164 0.836 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.308 18.226 6.395 22.382 hybrid contribution 0.683 -0.743 -0.324 1.060 sum -10.625 17.483 6.071 21.340 Atomic orbital electron populations 1.22294 0.90394 1.05853 1.06670 1.22918 0.93441 0.86504 0.68852 1.90526 1.73429 1.35600 1.39737 1.20623 0.94401 0.95716 1.12958 1.21436 1.01710 0.88966 0.91003 1.20645 0.90671 1.00696 1.07991 1.19849 0.92991 0.84872 0.91847 1.86153 1.21526 1.28810 1.87042 1.23079 0.77263 0.96723 1.03675 1.22672 0.99390 0.92463 0.88140 1.87864 1.77690 1.29415 1.37991 1.19853 0.92341 0.78214 0.96222 1.21363 1.35136 0.99501 1.03010 0.92196 1.25954 0.94492 0.96650 1.02031 1.70049 1.37659 1.11071 1.38056 0.85241 0.79010 0.77341 0.77878 1.18995 1.19842 1.19062 1.21290 1.01586 0.91532 1.10521 1.21208 0.93965 0.97894 0.91702 0.86385 0.89831 0.86597 0.80480 0.83807 0.90624 0.87004 0.89989 0.93146 0.98966 0.99516 0.91944 0.83561 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.76 8.92 71.24 0.64 -1.12 16 2 C 0.40 7.50 7.22 27.95 0.20 7.70 16 3 O -0.51 -13.69 17.07 -3.09 -0.05 -13.75 16 4 C -0.24 -4.65 5.87 -20.15 -0.12 -4.77 16 5 C -0.01 -0.22 9.44 22.44 0.21 -0.01 16 6 C -0.18 -4.00 9.95 22.21 0.22 -3.78 16 7 C 0.15 4.00 6.70 22.68 0.15 4.15 16 8 O -0.32 -10.29 10.09 -85.12 -0.86 -11.15 16 9 C 0.07 1.85 5.11 71.98 0.37 2.22 16 10 C 0.05 1.77 6.32 71.98 0.45 2.22 16 11 O -0.41 -20.06 10.29 -144.33 -1.49 -21.55 16 12 C 0.21 11.71 5.69 71.23 0.41 12.12 16 13 C -0.55 -33.15 9.43 25.60 0.24 -32.91 16 14 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 15 C 0.01 0.43 5.46 84.66 0.46 0.89 16 16 N -0.93 -55.65 13.29 21.45 0.28 -55.36 16 17 Si 0.98 44.29 29.54 68.60 2.03 46.32 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 21 C -0.23 -5.31 8.99 22.21 0.20 -5.11 16 22 C -0.03 -0.65 9.57 22.44 0.21 -0.44 16 23 H 0.12 0.52 8.09 -2.39 -0.02 0.50 16 24 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 25 H 0.12 0.58 8.07 -2.39 -0.02 0.56 16 26 H 0.18 1.34 7.04 -2.91 -0.02 1.32 16 27 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 28 H 0.08 2.02 7.65 -2.39 -0.02 2.01 16 29 H 0.11 2.18 7.65 -2.39 -0.02 2.16 16 30 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 32 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 33 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 34 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.15 2.85 6.27 -2.91 -0.02 2.83 16 36 H 0.13 2.87 7.64 -2.91 -0.02 2.85 16 Total: -1.00 -74.77 317.54 4.64 -70.14 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 1.07 Total: 4.19 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 3.65 Total: -18.84 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.28 Total: -55.36 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -2.40 Total: -46.44 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -74.77 4.64 -70.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292744024.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.083 kcal (2) G-P(sol) polarization free energy of solvation -74.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds