Wall clock time and date at job start Mon Mar 30 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 112.49032 * 2 1 4 4 S 1.81421 * 113.15154 * 230.17439 * 2 1 3 5 5 C 1.81421 * 73.13678 * 216.14079 * 4 2 1 6 6 C 1.53037 * 113.14644 * 129.77225 * 2 1 3 7 7 H 1.08996 * 113.15377 * 32.86310 * 6 2 1 8 8 N 1.46506 * 113.15463 * 263.40731 * 6 2 1 9 9 C 1.38820 * 120.00168 * 154.72396 * 8 6 2 10 10 C 1.39804 * 119.58133 * 359.72832 * 9 8 6 11 11 C 1.38598 * 119.48463 * 179.76737 * 10 9 8 12 12 C 1.38390 * 118.68527 * 0.49681 * 11 10 9 13 13 C 1.40555 * 119.14313 * 359.74850 * 12 11 10 14 14 C 1.41327 * 119.77865 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99797 * 359.97438 * 14 13 12 16 16 C 1.40015 * 119.99686 * 179.97438 * 14 13 12 17 17 N 1.30743 * 120.00285 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00082 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46996 * 59.99397 * 18 16 14 20 20 H 1.48493 * 109.47628 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47119 * 300.00106 * 18 16 14 22 22 N 1.31955 * 119.58812 * 180.02562 * 9 8 6 23 23 H 1.08999 * 109.47591 * 290.22510 * 1 2 3 24 24 H 1.09006 * 109.47217 * 50.22917 * 1 2 3 25 25 H 1.09005 * 109.47289 * 170.22443 * 1 2 3 26 26 H 1.09002 * 109.46651 * 189.77287 * 3 2 1 27 27 H 1.08996 * 109.47182 * 309.76973 * 3 2 1 28 28 H 1.09002 * 109.47131 * 69.77529 * 3 2 1 29 29 H 1.09001 * 113.14630 * 273.33769 * 5 4 2 30 30 H 1.08997 * 113.15018 * 143.86246 * 5 4 2 31 31 H 0.97005 * 119.99811 * 335.00322 * 8 6 2 32 32 H 1.08000 * 120.25537 * 0.02562 * 10 9 8 33 33 H 1.08002 * 120.65784 * 180.25089 * 11 10 9 34 34 H 1.07997 * 120.42874 * 179.72588 * 12 11 10 35 35 H 0.97003 * 119.99993 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1153 1.4137 0.0000 4 16 2.2433 -1.0683 -1.2811 5 6 3.3255 -1.1918 0.1697 6 6 2.1316 -0.9002 1.0816 7 1 1.5260 -1.7820 1.2909 8 7 2.5002 -0.1717 2.2980 9 6 2.5538 -0.8362 3.5157 10 6 2.2487 -2.1994 3.5721 11 6 2.3075 -2.8618 4.7880 12 6 2.6591 -2.1453 5.9186 13 6 2.9494 -0.7753 5.7979 14 6 3.3104 -0.0308 6.9436 15 1 3.3621 -0.5145 7.9077 16 6 3.6011 1.3340 6.8285 17 7 3.5390 1.9195 5.6611 18 14 4.0790 2.3181 8.3426 19 1 5.3080 1.7387 8.9420 20 1 4.3350 3.7287 7.9558 21 1 2.9744 2.2689 9.3339 22 7 2.8863 -0.1719 4.6063 23 1 -0.3634 0.3553 0.9643 24 1 -0.3634 0.6574 -0.7899 25 1 -0.3634 -1.0128 -0.1745 26 1 3.1900 1.3619 -0.1744 27 1 1.6469 2.0008 -0.7898 28 1 1.9260 1.8853 0.9643 29 1 4.0892 -0.4147 0.2019 30 1 3.7396 -2.1900 0.3118 31 1 2.7029 0.7758 2.2532 32 1 1.9734 -2.7329 2.6744 33 1 2.0796 -3.9156 4.8527 34 1 2.7093 -2.6323 6.8812 35 1 3.7408 2.8650 5.5814 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309367153.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:32 Heat of formation + Delta-G solvation = 58.708131 kcal Electronic energy + Delta-G solvation = -17717.575800 eV Core-core repulsion = 15035.367813 eV Total energy + Delta-G solvation = -2682.207987 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.99518 -37.58505 -33.92489 -32.73748 -30.65596 -30.05173 -28.28772 -27.60983 -25.40809 -23.03973 -21.61280 -21.13338 -19.51571 -17.39269 -16.71252 -15.91672 -15.37547 -14.99936 -14.45158 -14.29085 -14.19803 -13.62928 -13.40924 -12.94589 -12.65133 -12.29781 -12.28458 -12.02410 -11.80739 -11.55511 -11.24070 -11.19925 -11.03322 -10.69224 -10.52594 -10.42194 -10.06633 -9.87853 -9.55818 -8.97442 -7.97989 -7.76213 -7.57088 -6.63693 -6.37641 -4.51538 1.81905 2.01133 2.84702 3.08221 3.10906 3.18082 3.25876 3.95336 4.04990 4.43604 4.75622 4.79507 4.94814 5.00167 5.31248 5.58547 5.63138 5.70612 5.78918 5.79593 5.89586 6.01751 6.08326 6.11447 6.20564 6.55832 6.78487 6.83865 6.87262 7.20181 7.53123 7.74230 7.86499 8.10057 8.28258 8.58059 8.74964 9.05396 10.18349 10.34890 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.026919 B = 0.005368 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.913305 B = 5214.698617 C = 5869.786783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.032 4.032 3 C -0.132 4.132 4 S -0.304 6.304 5 C -0.099 4.099 6 C 0.178 3.822 7 H 0.123 0.877 8 N -0.719 5.719 9 C 0.409 3.591 10 C -0.367 4.367 11 C -0.031 4.031 12 C -0.314 4.314 13 C 0.292 3.708 14 C -0.433 4.433 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.716 5.716 18 Si 0.905 3.095 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.265 1.265 22 N -0.529 5.529 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.399 0.601 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.483 -0.242 -8.521 8.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.143 4.143 3 C -0.191 4.191 4 S -0.078 6.078 5 C -0.249 4.249 6 C 0.066 3.934 7 H 0.141 0.859 8 N -0.356 5.356 9 C 0.169 3.831 10 C -0.393 4.393 11 C -0.055 4.055 12 C -0.337 4.337 13 C 0.165 3.835 14 C -0.465 4.465 15 H 0.101 0.899 16 C -0.153 4.153 17 N -0.338 5.338 18 Si 0.730 3.270 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.190 1.190 22 N -0.250 5.250 23 H 0.092 0.908 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.236 0.764 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.480 0.209 -10.106 10.408 hybrid contribution 0.359 0.193 1.563 1.615 sum -2.121 0.402 -8.543 8.812 Atomic orbital electron populations 1.21811 0.91587 1.02889 1.02827 1.24126 0.99731 0.98169 0.92229 1.21842 1.01299 0.92969 1.03024 1.88754 1.35008 1.59836 1.24180 1.25201 1.01834 1.06411 0.91483 1.22206 0.92542 0.94995 0.83622 0.85910 1.44225 1.76929 1.11357 1.03068 1.18520 0.90161 0.87826 0.86596 1.20629 1.26043 0.94918 0.97724 1.20603 0.95133 0.97038 0.92746 1.21550 1.18303 0.96577 0.97309 1.18184 0.87052 0.88321 0.89923 1.19562 1.39363 0.93339 0.94218 0.89895 1.26037 0.94075 0.98446 0.96784 1.70128 1.29260 1.10688 1.23686 0.86430 0.79986 0.78546 0.82064 1.18997 1.20336 1.18987 1.68193 1.24237 1.35920 0.96607 0.90769 0.92188 0.91371 0.91418 0.91573 0.90468 0.87768 0.88603 0.76383 0.89070 0.88864 0.88658 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 9.13 37.16 0.34 -1.24 16 2 C -0.03 -0.41 1.31 -90.60 -0.12 -0.53 16 3 C -0.13 -1.59 8.21 37.16 0.31 -1.29 16 4 S -0.30 -4.19 23.92 -107.50 -2.57 -6.76 16 5 C -0.10 -1.38 7.39 37.18 0.27 -1.11 16 6 C 0.18 2.68 3.05 -67.89 -0.21 2.47 16 7 H 0.12 1.92 6.07 -51.93 -0.32 1.61 16 8 N -0.72 -13.36 5.40 -64.11 -0.35 -13.71 16 9 C 0.41 9.48 7.65 -155.32 -1.19 8.29 16 10 C -0.37 -8.11 9.30 -38.86 -0.36 -8.47 16 11 C -0.03 -0.69 10.15 -39.39 -0.40 -1.09 16 12 C -0.31 -7.77 9.83 -38.65 -0.38 -8.15 16 13 C 0.29 7.92 6.55 -85.00 -0.56 7.36 16 14 C -0.43 -11.47 9.14 -37.74 -0.34 -11.82 16 15 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 16 C 0.07 1.79 5.50 -17.35 -0.10 1.70 16 17 N -0.72 -18.46 11.46 55.55 0.64 -17.83 16 18 Si 0.91 18.33 29.56 -169.99 -5.02 13.31 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 N -0.53 -14.07 7.89 -10.33 -0.08 -14.15 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 26 H 0.07 0.81 6.83 -51.93 -0.35 0.46 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.97 6.82 -51.93 -0.35 0.62 16 29 H 0.10 1.44 7.12 -51.93 -0.37 1.07 16 30 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.40 7.37 6.69 -40.82 -0.27 7.10 16 32 H 0.09 1.78 6.03 -52.49 -0.32 1.46 16 33 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.27 6.35 8.29 -40.82 -0.34 6.01 16 LS Contribution 299.21 15.07 4.51 4.51 Total: -1.00 -27.94 299.21 -10.10 -38.04 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -4.49 Total: 10.47 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -2.73 Total: -13.88 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.21 Total: -45.68 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal Atomic # 16 Polarization: -4.19 SS G_CDS: -2.57 Total: -6.76 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.94 -10.10 -38.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309367153.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.750 kcal (2) G-P(sol) polarization free energy of solvation -27.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds