Wall clock time and date at job start Mon Mar 30 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 112.49032 * 2 1 4 4 S 1.81421 * 113.15154 * 230.17439 * 2 1 3 5 5 C 1.81421 * 73.13678 * 216.14079 * 4 2 1 6 6 C 1.53037 * 113.14644 * 129.77225 * 2 1 3 7 7 H 1.08996 * 113.15377 * 32.86310 * 6 2 1 8 8 N 1.46506 * 113.15463 * 263.40731 * 6 2 1 9 9 C 1.38820 * 120.00168 * 154.72396 * 8 6 2 10 10 C 1.39804 * 119.58133 * 359.72832 * 9 8 6 11 11 C 1.38598 * 119.48463 * 179.76737 * 10 9 8 12 12 C 1.38390 * 118.68527 * 0.49681 * 11 10 9 13 13 C 1.40555 * 119.14313 * 359.74850 * 12 11 10 14 14 C 1.41327 * 119.77865 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99797 * 359.97438 * 14 13 12 16 16 C 1.40015 * 119.99686 * 179.97438 * 14 13 12 17 17 N 1.30743 * 120.00285 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00082 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46996 * 59.99397 * 18 16 14 20 20 H 1.48493 * 109.47628 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47119 * 300.00106 * 18 16 14 22 22 N 1.31955 * 119.58812 * 180.02562 * 9 8 6 23 23 H 1.08999 * 109.47591 * 290.22510 * 1 2 3 24 24 H 1.09006 * 109.47217 * 50.22917 * 1 2 3 25 25 H 1.09005 * 109.47289 * 170.22443 * 1 2 3 26 26 H 1.09002 * 109.46651 * 189.77287 * 3 2 1 27 27 H 1.08996 * 109.47182 * 309.76973 * 3 2 1 28 28 H 1.09002 * 109.47131 * 69.77529 * 3 2 1 29 29 H 1.09001 * 113.14630 * 273.33769 * 5 4 2 30 30 H 1.08997 * 113.15018 * 143.86246 * 5 4 2 31 31 H 0.97005 * 119.99811 * 335.00322 * 8 6 2 32 32 H 1.08000 * 120.25537 * 0.02562 * 10 9 8 33 33 H 1.08002 * 120.65784 * 180.25089 * 11 10 9 34 34 H 1.07997 * 120.42874 * 179.72588 * 12 11 10 35 35 H 0.97003 * 119.99993 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1153 1.4137 0.0000 4 16 2.2433 -1.0683 -1.2811 5 6 3.3255 -1.1918 0.1697 6 6 2.1316 -0.9002 1.0816 7 1 1.5260 -1.7820 1.2909 8 7 2.5002 -0.1717 2.2980 9 6 2.5538 -0.8362 3.5157 10 6 2.2487 -2.1994 3.5721 11 6 2.3075 -2.8618 4.7880 12 6 2.6591 -2.1453 5.9186 13 6 2.9494 -0.7753 5.7979 14 6 3.3104 -0.0308 6.9436 15 1 3.3621 -0.5145 7.9077 16 6 3.6011 1.3340 6.8285 17 7 3.5390 1.9195 5.6611 18 14 4.0790 2.3181 8.3426 19 1 5.3080 1.7387 8.9420 20 1 4.3350 3.7287 7.9558 21 1 2.9744 2.2689 9.3339 22 7 2.8863 -0.1719 4.6063 23 1 -0.3634 0.3553 0.9643 24 1 -0.3634 0.6574 -0.7899 25 1 -0.3634 -1.0128 -0.1745 26 1 3.1900 1.3619 -0.1744 27 1 1.6469 2.0008 -0.7898 28 1 1.9260 1.8853 0.9643 29 1 4.0892 -0.4147 0.2019 30 1 3.7396 -2.1900 0.3118 31 1 2.7029 0.7758 2.2532 32 1 1.9734 -2.7329 2.6744 33 1 2.0796 -3.9156 4.8527 34 1 2.7093 -2.6323 6.8812 35 1 3.7408 2.8650 5.5814 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309367153.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:31 Heat of formation + Delta-G solvation = 44.225243 kcal Electronic energy + Delta-G solvation = -17718.203825 eV Core-core repulsion = 15035.367813 eV Total energy + Delta-G solvation = -2682.836012 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.49304 -39.12051 -35.66362 -34.33801 -32.30842 -31.48157 -29.96910 -28.61292 -27.24516 -24.29463 -23.38503 -22.67628 -20.93111 -19.16939 -18.31630 -17.17921 -16.71890 -16.55980 -16.06950 -15.69334 -15.57180 -15.09743 -14.70960 -14.50098 -14.23601 -13.79988 -13.37288 -13.23739 -13.11718 -12.90767 -12.71668 -12.63532 -12.57563 -12.35785 -12.02497 -11.72882 -11.69621 -11.26100 -11.08152 -10.66230 -9.83668 -9.43856 -8.86275 -8.34942 -8.21680 -6.45614 0.70588 0.86998 1.08388 1.36354 1.43645 1.54582 1.60685 2.26679 2.58973 2.92717 3.31215 3.65813 3.75293 3.94825 4.09580 4.19870 4.40677 4.51029 4.56510 4.65874 4.78205 4.79266 4.82538 4.91455 4.99579 5.02553 5.11395 5.13701 5.23710 5.38057 5.72537 5.97577 6.07211 6.23733 6.53229 6.83584 6.92169 7.21399 8.34424 8.52011 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.026919 B = 0.005368 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.913305 B = 5214.698617 C = 5869.786783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.024 4.024 3 C -0.131 4.131 4 S -0.298 6.298 5 C -0.097 4.097 6 C 0.171 3.829 7 H 0.121 0.879 8 N -0.711 5.711 9 C 0.397 3.603 10 C -0.366 4.366 11 C -0.029 4.029 12 C -0.343 4.343 13 C 0.260 3.740 14 C -0.471 4.471 15 H 0.085 0.915 16 C 0.029 3.971 17 N -0.749 5.749 18 Si 0.983 3.017 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.261 1.261 22 N -0.561 5.561 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.398 0.602 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.761 -0.160 -9.425 9.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 C -0.190 4.190 4 S -0.072 6.072 5 C -0.247 4.247 6 C 0.061 3.939 7 H 0.139 0.861 8 N -0.347 5.347 9 C 0.156 3.844 10 C -0.391 4.391 11 C -0.054 4.054 12 C -0.366 4.366 13 C 0.133 3.867 14 C -0.503 4.503 15 H 0.103 0.897 16 C -0.193 4.193 17 N -0.371 5.371 18 Si 0.803 3.197 19 H -0.186 1.186 20 H -0.193 1.193 21 H -0.185 1.185 22 N -0.283 5.283 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.124 0.876 30 H 0.117 0.883 31 H 0.235 0.765 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.119 0.881 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.770 0.272 -11.067 11.412 hybrid contribution 0.398 0.081 1.681 1.730 sum -2.372 0.353 -9.386 9.687 Atomic orbital electron populations 1.21818 0.90576 1.03486 1.03087 1.24078 1.00502 0.98132 0.90796 1.21845 1.01412 0.92469 1.03239 1.88782 1.34670 1.60007 1.23692 1.25096 1.01449 1.06698 0.91450 1.22423 0.93441 0.95269 0.82734 0.86140 1.44285 1.76264 1.11382 1.02729 1.18917 0.89531 0.88726 0.87208 1.20981 1.24724 0.94683 0.98738 1.21004 0.93618 0.98646 0.92082 1.21696 1.20077 0.96264 0.98582 1.18634 0.87791 0.89645 0.90636 1.19904 1.41194 0.94738 0.94460 0.89698 1.26884 0.93512 0.98902 1.00042 1.70214 1.29863 1.11256 1.25749 0.85262 0.79565 0.77027 0.77806 1.18600 1.19277 1.18537 1.68165 1.25656 1.37109 0.97366 0.91388 0.90602 0.91089 0.91479 0.89841 0.91210 0.87573 0.88319 0.76473 0.86267 0.85433 0.88120 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.13 71.98 0.66 -2.20 16 2 C -0.02 -0.59 1.31 -10.78 -0.01 -0.60 16 3 C -0.13 -2.92 8.21 71.98 0.59 -2.33 16 4 S -0.30 -7.55 23.92 -56.49 -1.35 -8.90 16 5 C -0.10 -2.54 7.39 72.00 0.53 -2.01 16 6 C 0.17 4.91 3.05 45.02 0.14 5.05 16 7 H 0.12 3.54 6.07 -2.39 -0.01 3.52 16 8 N -0.71 -26.07 5.40 -356.76 -1.93 -28.00 16 9 C 0.40 18.41 7.65 133.42 1.02 19.43 16 10 C -0.37 -15.72 9.30 22.73 0.21 -15.51 16 11 C -0.03 -1.29 10.15 22.39 0.23 -1.06 16 12 C -0.34 -17.21 9.83 22.87 0.22 -16.98 16 13 C 0.26 14.50 6.55 40.18 0.26 14.76 16 14 C -0.47 -25.73 9.14 23.46 0.21 -25.51 16 15 H 0.08 4.37 7.85 -2.91 -0.02 4.35 16 16 C 0.03 1.45 5.50 85.29 0.47 1.92 16 17 N -0.75 -39.39 11.46 21.83 0.25 -39.14 16 18 Si 0.98 37.92 29.56 68.60 2.03 39.95 16 19 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 20 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 21 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 22 N -0.56 -30.51 7.89 -186.58 -1.47 -31.98 16 23 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.08 1.41 8.14 -2.38 -0.02 1.40 16 25 H 0.07 1.50 8.10 -2.38 -0.02 1.48 16 26 H 0.07 1.51 6.83 -2.39 -0.02 1.49 16 27 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.69 6.82 -2.39 -0.02 1.67 16 29 H 0.11 2.78 7.12 -2.39 -0.02 2.76 16 30 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.40 14.72 6.69 -92.70 -0.62 14.10 16 32 H 0.12 4.37 6.03 -2.91 -0.02 4.35 16 33 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 34 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 35 H 0.28 13.15 8.29 -92.71 -0.77 12.38 16 Total: -1.00 -60.50 299.21 2.55 -57.96 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 0.48 Total: 35.16 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 4.53 Total: -25.05 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -3.15 Total: -99.12 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -1.35 Total: -8.90 kcal Total: -60.50 2.55 -57.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309367153.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.183 kcal (2) G-P(sol) polarization free energy of solvation -60.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds