Wall clock time and date at job start Mon Mar 30 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 112.52684 * 2 1 4 4 S 1.81426 * 113.14765 * 230.19621 * 2 1 3 5 5 C 1.81425 * 73.13816 * 273.34434 * 4 2 1 6 6 C 1.53032 * 89.89008 * 331.39945 * 5 4 2 7 7 H 1.08999 * 113.15310 * 148.19209 * 6 5 4 8 8 N 1.46498 * 113.15139 * 277.63906 * 6 5 4 9 9 C 1.39250 * 120.00119 * 255.49502 * 8 6 5 10 10 C 1.39708 * 120.78339 * 359.97438 * 9 8 6 11 11 C 1.38450 * 119.47327 * 180.02562 * 10 9 8 12 12 N 1.31538 * 121.10394 * 359.72214 * 11 10 9 13 13 C 1.33699 * 121.69973 * 0.56379 * 12 11 10 14 14 C 1.41448 * 119.79294 * 179.70658 * 13 12 11 15 15 H 1.08006 * 119.99629 * 186.91047 * 14 13 12 16 16 C 1.40010 * 120.00456 * 6.91177 * 14 13 12 17 17 N 1.30750 * 119.99875 * 7.19203 * 16 14 13 18 18 Si 1.86797 * 120.00265 * 187.18961 * 16 14 13 19 19 H 1.48507 * 109.47001 * 265.01846 * 18 16 14 20 20 H 1.48502 * 109.47251 * 25.01758 * 18 16 14 21 21 H 1.48499 * 109.47271 * 145.01928 * 18 16 14 22 22 C 1.39028 * 120.78342 * 179.97438 * 9 8 6 23 23 H 1.08994 * 109.47397 * 290.20305 * 1 2 3 24 24 H 1.09006 * 109.46677 * 50.20227 * 1 2 3 25 25 H 1.09002 * 109.47277 * 170.19813 * 1 2 3 26 26 H 1.08998 * 109.47288 * 189.79397 * 3 2 1 27 27 H 1.09002 * 109.46824 * 309.80486 * 3 2 1 28 28 H 1.09007 * 109.46730 * 69.79313 * 3 2 1 29 29 H 1.08997 * 113.14932 * 216.13270 * 5 4 2 30 30 H 1.09006 * 113.18110 * 86.66550 * 5 4 2 31 31 H 0.97004 * 120.00143 * 75.50227 * 8 6 5 32 32 H 1.07996 * 120.26348 * 0.03910 * 10 9 8 33 33 H 1.07999 * 119.44887 * 179.97438 * 11 10 9 34 34 H 0.97003 * 120.00158 * 179.97438 * 17 16 14 35 35 H 1.07999 * 120.55767 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1161 1.4132 0.0000 4 16 2.2431 -1.0679 -1.2816 5 6 1.9431 -2.1152 0.1692 6 6 2.1315 -0.9009 1.0811 7 1 1.5267 -0.9471 1.9868 8 7 3.5384 -0.6037 1.3613 9 6 4.0843 -0.9247 2.6015 10 6 3.3051 -1.5300 3.5906 11 6 3.8755 -1.8371 4.8142 12 7 5.1406 -1.5733 5.0595 13 6 5.9262 -0.9902 4.1482 14 6 7.2797 -0.7194 4.4572 15 1 7.8871 -0.1498 3.7693 16 6 7.8321 -1.1896 5.6547 17 7 7.1434 -1.9952 6.4204 18 14 9.5529 -0.6660 6.1586 19 1 10.5317 -1.6918 5.7168 20 1 9.8800 0.6361 5.5238 21 1 9.6153 -0.5261 7.6356 22 6 5.4175 -0.6505 2.8846 23 1 -0.3634 0.3549 0.9644 24 1 -0.3633 0.6578 -0.7896 25 1 -0.3634 -1.0127 -0.1750 26 1 3.1907 1.3609 -0.1748 27 1 1.6476 2.0009 -0.7895 28 1 1.9274 1.8848 0.9645 29 1 2.7067 -2.8801 0.3107 30 1 0.9329 -2.5234 0.2022 31 1 4.0897 -0.1831 0.6829 32 1 2.2662 -1.7568 3.4021 33 1 3.2727 -2.3046 5.5786 34 1 7.5263 -2.3213 7.2498 35 1 6.0509 -0.1829 2.1452 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309504020.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:33 Heat of formation + Delta-G solvation = 55.986158 kcal Electronic energy + Delta-G solvation = -17461.731932 eV Core-core repulsion = 14779.405911 eV Total energy + Delta-G solvation = -2682.326021 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.06244 -37.62508 -34.13989 -33.03012 -30.57856 -29.83481 -28.53257 -26.93252 -25.66316 -23.06394 -21.81433 -20.99747 -19.94602 -17.68897 -16.33985 -15.79210 -15.57779 -15.02148 -14.44722 -14.25686 -14.12511 -13.65429 -13.50143 -13.00462 -12.77243 -12.42350 -12.33319 -12.24874 -12.15675 -11.60972 -11.46106 -11.23321 -11.11221 -10.68331 -10.61961 -10.43531 -9.88053 -9.83491 -9.62127 -9.13045 -7.76397 -7.58903 -7.45516 -6.76744 -6.39083 -4.46940 1.76587 1.96910 2.82645 3.12030 3.15124 3.18270 3.30827 3.82183 3.99741 4.34679 4.72198 4.81056 4.82708 4.96198 5.26147 5.42081 5.48808 5.56613 5.63251 5.67733 5.78450 5.90334 6.03664 6.10255 6.13055 6.42978 6.67568 6.92114 7.10745 7.18916 7.47081 7.61846 7.67320 8.27625 8.37235 8.44167 8.78202 9.02639 10.22810 10.39427 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.039208 B = 0.004384 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.970706 B = 6384.741055 C = 6649.141190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.035 4.035 3 C -0.130 4.130 4 S -0.306 6.306 5 C -0.102 4.102 6 C 0.169 3.831 7 H 0.112 0.888 8 N -0.725 5.725 9 C 0.254 3.746 10 C -0.373 4.373 11 C 0.150 3.850 12 N -0.509 5.509 13 C 0.285 3.715 14 C -0.436 4.436 15 H 0.081 0.919 16 C 0.074 3.926 17 N -0.718 5.718 18 Si 0.904 3.096 19 H -0.271 1.271 20 H -0.261 1.261 21 H -0.276 1.276 22 C -0.340 4.340 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.397 0.603 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.272 0.728 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.177 2.784 -8.318 13.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.146 4.146 3 C -0.188 4.188 4 S -0.080 6.080 5 C -0.253 4.253 6 C 0.058 3.942 7 H 0.129 0.871 8 N -0.357 5.357 9 C 0.150 3.850 10 C -0.400 4.400 11 C -0.017 4.017 12 N -0.223 5.223 13 C 0.160 3.840 14 C -0.467 4.467 15 H 0.099 0.901 16 C -0.151 4.151 17 N -0.340 5.340 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.185 1.185 21 H -0.201 1.201 22 C -0.366 4.366 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.234 0.766 32 H 0.110 0.890 33 H 0.133 0.867 34 H 0.083 0.917 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.362 2.378 -8.648 12.965 hybrid contribution 0.098 0.401 -0.052 0.416 sum -9.264 2.780 -8.700 13.009 Atomic orbital electron populations 1.21835 0.90814 1.03032 1.02886 1.24088 0.98677 0.98949 0.92868 1.21729 1.01426 0.93065 1.02598 1.88861 1.81762 1.12439 1.24890 1.25122 1.05267 1.02460 0.92402 1.21257 0.86046 0.89711 0.97163 0.87075 1.44112 1.07986 1.69126 1.14467 1.17641 0.92090 0.91652 0.83664 1.20837 0.99346 1.21904 0.97939 1.22261 0.92584 0.93707 0.93142 1.68686 1.02795 1.17733 1.33058 1.18307 0.92979 0.86568 0.86105 1.19574 0.94499 1.29525 1.03117 0.90069 1.26029 0.99203 0.93795 0.96115 1.70093 1.35327 1.19683 1.08854 0.86375 0.82223 0.80099 0.78454 1.19588 1.18520 1.20069 1.21158 0.93926 1.20872 1.00692 0.90935 0.91492 0.91459 0.91340 0.92295 0.90869 0.88227 0.87786 0.76637 0.88978 0.86652 0.91660 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 8.99 37.15 0.33 -0.81 16 2 C -0.03 -0.40 1.29 -90.60 -0.12 -0.52 16 3 C -0.13 -1.48 8.64 37.16 0.32 -1.15 16 4 S -0.31 -4.16 23.44 -107.50 -2.52 -6.68 16 5 C -0.10 -1.31 7.40 37.17 0.27 -1.03 16 6 C 0.17 2.31 3.28 -67.89 -0.22 2.08 16 7 H 0.11 1.50 6.21 -51.93 -0.32 1.18 16 8 N -0.72 -12.28 4.78 -62.22 -0.30 -12.58 16 9 C 0.25 5.46 6.69 -83.65 -0.56 4.90 16 10 C -0.37 -8.02 9.33 -38.95 -0.36 -8.39 16 11 C 0.15 3.60 11.17 -17.60 -0.20 3.41 16 12 N -0.51 -14.04 7.96 -11.21 -0.09 -14.13 16 13 C 0.28 7.83 6.52 -85.02 -0.55 7.28 16 14 C -0.44 -11.83 9.13 -37.70 -0.34 -12.17 16 15 H 0.08 2.07 7.86 -52.48 -0.41 1.66 16 16 C 0.07 1.90 5.47 -17.35 -0.09 1.81 16 17 N -0.72 -19.33 11.56 55.55 0.64 -18.68 16 18 Si 0.90 18.76 29.57 -169.99 -5.03 13.74 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 22 C -0.34 -8.32 9.72 -38.48 -0.37 -8.70 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.57 6.83 -51.93 -0.35 0.22 16 26 H 0.07 0.85 6.81 -51.93 -0.35 0.50 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.10 1.08 7.12 -51.93 -0.37 0.71 16 31 H 0.40 6.58 7.10 -40.82 -0.29 6.29 16 32 H 0.09 1.71 6.19 -52.49 -0.32 1.38 16 33 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 34 H 0.27 6.62 8.29 -40.82 -0.34 6.28 16 35 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 299.48 15.07 4.51 4.51 Total: -1.00 -29.24 299.48 -9.19 -38.44 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -4.52 Total: 8.68 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -1.90 Total: -13.30 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.26 Total: -45.39 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.74 kcal Atomic # 16 Polarization: -4.16 SS G_CDS: -2.52 Total: -6.68 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.24 -9.19 -38.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309504020.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.425 kcal (2) G-P(sol) polarization free energy of solvation -29.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds