Wall clock time and date at job start Mon Mar 30 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 112.52684 * 2 1 4 4 S 1.81426 * 113.14765 * 230.19621 * 2 1 3 5 5 C 1.81425 * 73.13816 * 273.34434 * 4 2 1 6 6 C 1.53032 * 89.89008 * 331.39945 * 5 4 2 7 7 H 1.08999 * 113.15310 * 148.19209 * 6 5 4 8 8 N 1.46498 * 113.15139 * 277.63906 * 6 5 4 9 9 C 1.39250 * 120.00119 * 255.49502 * 8 6 5 10 10 C 1.39708 * 120.78339 * 359.97438 * 9 8 6 11 11 C 1.38450 * 119.47327 * 180.02562 * 10 9 8 12 12 N 1.31538 * 121.10394 * 359.72214 * 11 10 9 13 13 C 1.33699 * 121.69973 * 0.56379 * 12 11 10 14 14 C 1.41448 * 119.79294 * 179.70658 * 13 12 11 15 15 H 1.08006 * 119.99629 * 186.91047 * 14 13 12 16 16 C 1.40010 * 120.00456 * 6.91177 * 14 13 12 17 17 N 1.30750 * 119.99875 * 7.19203 * 16 14 13 18 18 Si 1.86797 * 120.00265 * 187.18961 * 16 14 13 19 19 H 1.48507 * 109.47001 * 265.01846 * 18 16 14 20 20 H 1.48502 * 109.47251 * 25.01758 * 18 16 14 21 21 H 1.48499 * 109.47271 * 145.01928 * 18 16 14 22 22 C 1.39028 * 120.78342 * 179.97438 * 9 8 6 23 23 H 1.08994 * 109.47397 * 290.20305 * 1 2 3 24 24 H 1.09006 * 109.46677 * 50.20227 * 1 2 3 25 25 H 1.09002 * 109.47277 * 170.19813 * 1 2 3 26 26 H 1.08998 * 109.47288 * 189.79397 * 3 2 1 27 27 H 1.09002 * 109.46824 * 309.80486 * 3 2 1 28 28 H 1.09007 * 109.46730 * 69.79313 * 3 2 1 29 29 H 1.08997 * 113.14932 * 216.13270 * 5 4 2 30 30 H 1.09006 * 113.18110 * 86.66550 * 5 4 2 31 31 H 0.97004 * 120.00143 * 75.50227 * 8 6 5 32 32 H 1.07996 * 120.26348 * 0.03910 * 10 9 8 33 33 H 1.07999 * 119.44887 * 179.97438 * 11 10 9 34 34 H 0.97003 * 120.00158 * 179.97438 * 17 16 14 35 35 H 1.07999 * 120.55767 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1161 1.4132 0.0000 4 16 2.2431 -1.0679 -1.2816 5 6 1.9431 -2.1152 0.1692 6 6 2.1315 -0.9009 1.0811 7 1 1.5267 -0.9471 1.9868 8 7 3.5384 -0.6037 1.3613 9 6 4.0843 -0.9247 2.6015 10 6 3.3051 -1.5300 3.5906 11 6 3.8755 -1.8371 4.8142 12 7 5.1406 -1.5733 5.0595 13 6 5.9262 -0.9902 4.1482 14 6 7.2797 -0.7194 4.4572 15 1 7.8871 -0.1498 3.7693 16 6 7.8321 -1.1896 5.6547 17 7 7.1434 -1.9952 6.4204 18 14 9.5529 -0.6660 6.1586 19 1 10.5317 -1.6918 5.7168 20 1 9.8800 0.6361 5.5238 21 1 9.6153 -0.5261 7.6356 22 6 5.4175 -0.6505 2.8846 23 1 -0.3634 0.3549 0.9644 24 1 -0.3633 0.6578 -0.7896 25 1 -0.3634 -1.0127 -0.1750 26 1 3.1907 1.3609 -0.1748 27 1 1.6476 2.0009 -0.7895 28 1 1.9274 1.8848 0.9645 29 1 2.7067 -2.8801 0.3107 30 1 0.9329 -2.5234 0.2022 31 1 4.0897 -0.1831 0.6829 32 1 2.2662 -1.7568 3.4021 33 1 3.2727 -2.3046 5.5786 34 1 7.5263 -2.3213 7.2498 35 1 6.0509 -0.1829 2.1452 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309504020.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:33 Heat of formation + Delta-G solvation = 39.061250 kcal Electronic energy + Delta-G solvation = -17462.465851 eV Core-core repulsion = 14779.405911 eV Total energy + Delta-G solvation = -2683.059940 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.49205 -39.16072 -35.78070 -34.72745 -31.91199 -31.51459 -29.94446 -27.98512 -27.52311 -24.26717 -23.53337 -22.54695 -21.27449 -19.44752 -17.78146 -17.30104 -16.84911 -16.50281 -15.97414 -15.67271 -15.44113 -15.05516 -14.72039 -14.28538 -14.19847 -14.02516 -13.91231 -13.27232 -13.10539 -12.96115 -12.86849 -12.62692 -12.59385 -12.32550 -12.09362 -11.79253 -11.57134 -11.30652 -10.95658 -10.74296 -9.50611 -9.36986 -8.83288 -8.40595 -8.27161 -6.46223 0.79543 0.92148 1.00590 1.40483 1.42063 1.55566 1.60386 2.25566 2.48994 2.91033 3.30853 3.75431 3.88573 3.94941 4.09481 4.26162 4.32078 4.46763 4.58071 4.69338 4.73686 4.75512 4.86268 4.88758 4.90538 5.12800 5.14678 5.24143 5.27053 5.42068 5.70476 5.75457 5.89997 6.32806 6.62455 6.82204 6.95268 7.10948 8.34250 8.52398 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.039208 B = 0.004384 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.970706 B = 6384.741055 C = 6649.141190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.014 4.014 3 C -0.132 4.132 4 S -0.351 6.351 5 C -0.089 4.089 6 C 0.157 3.843 7 H 0.123 0.877 8 N -0.716 5.716 9 C 0.267 3.733 10 C -0.360 4.360 11 C 0.131 3.869 12 N -0.549 5.549 13 C 0.255 3.745 14 C -0.478 4.478 15 H 0.081 0.919 16 C 0.030 3.970 17 N -0.759 5.759 18 Si 0.984 3.016 19 H -0.263 1.263 20 H -0.258 1.258 21 H -0.267 1.267 22 C -0.365 4.365 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.136 0.864 31 H 0.399 0.601 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.279 0.721 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.882 3.179 -8.874 15.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.124 4.124 3 C -0.190 4.190 4 S -0.124 6.124 5 C -0.239 4.239 6 C 0.047 3.953 7 H 0.141 0.859 8 N -0.346 5.346 9 C 0.159 3.841 10 C -0.387 4.387 11 C -0.034 4.034 12 N -0.264 5.264 13 C 0.130 3.870 14 C -0.510 4.510 15 H 0.099 0.901 16 C -0.191 4.191 17 N -0.381 5.381 18 Si 0.804 3.196 19 H -0.188 1.188 20 H -0.182 1.182 21 H -0.191 1.191 22 C -0.392 4.392 23 H 0.107 0.893 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.154 0.846 31 H 0.235 0.765 32 H 0.148 0.852 33 H 0.155 0.845 34 H 0.089 0.911 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.121 2.773 -9.250 14.729 hybrid contribution 0.429 0.278 -0.017 0.512 sum -10.692 3.051 -9.266 14.474 Atomic orbital electron populations 1.21888 0.88176 1.04055 1.04248 1.24088 1.00284 0.97957 0.90070 1.21749 1.00593 0.93291 1.03365 1.89128 1.82589 1.14448 1.26282 1.25097 1.06499 1.01258 0.91089 1.21541 0.84039 0.91218 0.98472 0.85907 1.44133 1.09626 1.68130 1.12739 1.17641 0.91110 0.90125 0.85210 1.21137 1.00892 1.20013 0.96703 1.22753 0.92035 0.93777 0.94869 1.68621 1.04409 1.19290 1.34103 1.18695 0.93665 0.87274 0.87325 1.19900 0.95181 1.31262 1.04616 0.90088 1.26912 1.03492 0.93265 0.95476 1.70181 1.37538 1.20922 1.09509 0.85192 0.76492 0.79687 0.78249 1.18759 1.18166 1.19101 1.21220 0.95660 1.22206 1.00120 0.89259 0.90507 0.90576 0.92951 0.90739 0.90503 0.90030 0.84597 0.76464 0.85243 0.84493 0.91085 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 8.99 71.98 0.65 -1.07 16 2 C -0.01 -0.27 1.29 -10.78 -0.01 -0.29 16 3 C -0.13 -2.68 8.64 71.98 0.62 -2.06 16 4 S -0.35 -8.88 23.44 -56.49 -1.32 -10.20 16 5 C -0.09 -2.05 7.40 71.99 0.53 -1.51 16 6 C 0.16 3.81 3.28 45.02 0.15 3.96 16 7 H 0.12 2.78 6.21 -2.39 -0.01 2.77 16 8 N -0.72 -23.20 4.78 -350.76 -1.68 -24.87 16 9 C 0.27 11.26 6.69 38.51 0.26 11.52 16 10 C -0.36 -14.87 9.33 22.68 0.21 -14.66 16 11 C 0.13 6.24 11.17 84.79 0.95 7.19 16 12 N -0.55 -31.08 7.96 -189.38 -1.51 -32.59 16 13 C 0.25 14.53 6.52 40.17 0.26 14.80 16 14 C -0.48 -27.00 9.13 23.49 0.21 -26.79 16 15 H 0.08 4.34 7.86 -2.91 -0.02 4.31 16 16 C 0.03 1.58 5.47 85.28 0.47 2.05 16 17 N -0.76 -42.06 11.56 21.83 0.25 -41.81 16 18 Si 0.98 39.27 29.57 68.60 2.03 41.30 16 19 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 20 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 21 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 22 C -0.37 -18.33 9.72 22.98 0.22 -18.11 16 23 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.08 0.95 6.83 -2.39 -0.02 0.93 16 26 H 0.05 1.24 6.81 -2.39 -0.02 1.22 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 1.53 8.14 -2.38 -0.02 1.52 16 29 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.14 2.27 7.12 -2.38 -0.02 2.26 16 31 H 0.40 12.93 7.10 -92.71 -0.66 12.27 16 32 H 0.13 4.31 6.19 -2.91 -0.02 4.29 16 33 H 0.14 5.71 8.06 -2.91 -0.02 5.69 16 34 H 0.28 13.89 8.29 -92.71 -0.77 13.12 16 35 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -65.66 299.48 2.73 -62.93 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: 0.44 Total: 30.23 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 4.52 Total: -24.99 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -2.93 Total: -99.27 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.32 Total: -10.20 kcal Total: -65.66 2.73 -62.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309504020.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.987 kcal (2) G-P(sol) polarization free energy of solvation -65.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds