Wall clock time and date at job start Mon Mar 30 2020 06:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 112.52185 * 2 1 4 4 S 1.81425 * 113.14734 * 230.20099 * 2 1 3 5 5 C 1.81427 * 73.13797 * 273.34565 * 4 2 1 6 6 C 1.53045 * 89.88988 * 331.39830 * 5 4 2 7 7 H 1.08993 * 113.15155 * 277.64656 * 6 5 4 8 8 N 1.46498 * 113.15210 * 148.14464 * 6 5 4 9 9 C 1.39246 * 119.99646 * 104.50261 * 8 6 5 10 10 C 1.39717 * 120.78497 * 359.72407 * 9 8 6 11 11 C 1.38451 * 119.47040 * 179.77247 * 10 9 8 12 12 N 1.31528 * 121.10718 * 0.50664 * 11 10 9 13 13 C 1.33692 * 121.69961 * 359.75006 * 12 11 10 14 14 C 1.41457 * 119.79545 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00384 * 173.72042 * 14 13 12 16 16 C 1.40019 * 119.99850 * 353.71357 * 14 13 12 17 17 N 1.30741 * 120.00219 * 6.29748 * 16 14 13 18 18 Si 1.86800 * 119.99825 * 186.29180 * 16 14 13 19 19 H 1.48502 * 109.46999 * 94.99110 * 18 16 14 20 20 H 1.48498 * 109.47044 * 214.98732 * 18 16 14 21 21 H 1.48493 * 109.47257 * 334.99038 * 18 16 14 22 22 C 1.39028 * 120.78326 * 180.02562 * 9 8 6 23 23 H 1.08999 * 109.47338 * 290.19823 * 1 2 3 24 24 H 1.09007 * 109.47154 * 50.19443 * 1 2 3 25 25 H 1.08999 * 109.47704 * 170.19417 * 1 2 3 26 26 H 1.09001 * 109.46884 * 189.79695 * 3 2 1 27 27 H 1.08997 * 109.47701 * 309.80380 * 3 2 1 28 28 H 1.09007 * 109.46588 * 69.80299 * 3 2 1 29 29 H 1.08997 * 113.14773 * 216.13716 * 5 4 2 30 30 H 1.08996 * 113.14386 * 86.65701 * 5 4 2 31 31 H 0.97002 * 120.00276 * 284.50799 * 8 6 5 32 32 H 1.07999 * 120.25987 * 0.02562 * 10 9 8 33 33 H 1.07997 * 119.44203 * 180.25742 * 11 10 9 34 34 H 0.96994 * 120.00275 * 179.97438 * 17 16 14 35 35 H 1.08000 * 120.55705 * 359.95222 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1161 1.4133 0.0000 4 16 2.2432 -1.0678 -1.2817 5 6 1.9432 -2.1153 0.1690 6 6 2.1316 -0.9009 1.0811 7 1 3.1783 -0.6797 1.2895 8 7 1.3179 -0.9626 2.2978 9 6 1.9120 -1.2760 3.5175 10 6 3.2816 -1.5402 3.5989 11 6 3.8449 -1.8444 4.8265 12 7 3.1106 -1.8986 5.9163 13 6 1.7955 -1.6591 5.8900 14 6 1.0443 -1.7290 7.0866 15 1 0.0042 -1.4382 7.0890 16 6 1.6491 -2.1754 8.2679 17 7 2.9350 -2.4101 8.2957 18 14 0.6188 -2.4355 9.8042 19 1 0.2122 -3.8610 9.8920 20 1 1.4173 -2.0737 11.0028 21 1 -0.5922 -1.5785 9.7390 22 6 1.1554 -1.3396 4.6821 23 1 -0.3634 0.3548 0.9644 24 1 -0.3634 0.6579 -0.7895 25 1 -0.3634 -1.0126 -0.1750 26 1 3.1907 1.3610 -0.1749 27 1 1.6476 2.0010 -0.7894 28 1 1.9274 1.8848 0.9646 29 1 2.7067 -2.8801 0.3105 30 1 0.9328 -2.5229 0.2015 31 1 0.3653 -0.7851 2.2537 32 1 3.8966 -1.5033 2.7118 33 1 4.9043 -2.0444 4.8895 34 1 3.3540 -2.7189 9.1141 35 1 0.0932 -1.1456 4.6580 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309504021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:35 Heat of formation + Delta-G solvation = 54.502686 kcal Electronic energy + Delta-G solvation = -17445.148360 eV Core-core repulsion = 14762.758011 eV Total energy + Delta-G solvation = -2682.390349 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.09818 -37.64793 -34.11147 -33.00303 -30.60201 -29.85437 -28.09130 -27.71592 -25.67620 -23.08218 -21.72290 -21.23739 -19.60509 -17.78516 -16.28537 -15.88435 -15.67645 -15.15415 -14.43708 -14.35393 -14.16230 -13.74508 -13.46272 -12.93352 -12.67451 -12.44391 -12.37741 -12.21404 -12.00750 -11.70264 -11.38461 -11.23227 -11.16166 -10.71583 -10.65297 -10.39826 -10.11284 -9.83751 -9.72804 -9.14449 -7.86081 -7.60311 -7.48410 -6.80593 -6.35897 -4.50118 1.71073 1.90519 2.80781 3.10665 3.13855 3.16156 3.29331 3.92079 3.99951 4.32553 4.61621 4.78402 4.82167 4.88719 5.19129 5.41377 5.50315 5.58409 5.65483 5.67930 5.76953 5.94278 6.00965 6.07490 6.12044 6.40962 6.64888 6.88667 7.07588 7.15975 7.43395 7.59267 7.64657 8.24456 8.33616 8.37497 8.75882 9.00810 10.22165 10.38401 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.041861 B = 0.004247 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.715640 B = 6591.896785 C = 6876.896343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.035 4.035 3 C -0.133 4.133 4 S -0.300 6.300 5 C -0.100 4.100 6 C 0.173 3.827 7 H 0.124 0.876 8 N -0.735 5.735 9 C 0.250 3.750 10 C -0.371 4.371 11 C 0.150 3.850 12 N -0.505 5.505 13 C 0.282 3.718 14 C -0.435 4.435 15 H 0.081 0.919 16 C 0.071 3.929 17 N -0.715 5.715 18 Si 0.905 3.095 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.262 1.262 22 C -0.340 4.340 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.393 0.607 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.271 0.729 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 3.422 -11.551 12.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.145 4.145 3 C -0.191 4.191 4 S -0.073 6.073 5 C -0.250 4.250 6 C 0.063 3.937 7 H 0.141 0.859 8 N -0.369 5.369 9 C 0.146 3.854 10 C -0.398 4.398 11 C -0.017 4.017 12 N -0.219 5.219 13 C 0.157 3.843 14 C -0.466 4.466 15 H 0.099 0.901 16 C -0.154 4.154 17 N -0.336 5.336 18 Si 0.729 3.271 19 H -0.195 1.195 20 H -0.201 1.201 21 H -0.186 1.186 22 C -0.367 4.367 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.228 0.772 32 H 0.110 0.890 33 H 0.134 0.866 34 H 0.083 0.917 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.790 3.122 -12.034 12.560 hybrid contribution -1.586 0.010 0.637 1.709 sum -3.376 3.132 -11.397 12.292 Atomic orbital electron populations 1.21838 0.91367 1.03096 1.02780 1.24126 0.98899 0.98979 0.92536 1.21812 1.01351 0.93209 1.02775 1.88818 1.81834 1.12750 1.23937 1.25182 1.05730 1.02501 0.91617 1.22221 0.97630 0.90059 0.83827 0.85853 1.44427 1.09310 1.79163 1.03971 1.17658 0.92129 0.91427 0.84192 1.20864 0.93521 1.26479 0.98952 1.22302 0.98413 0.92492 0.88475 1.68762 1.05943 1.20313 1.26930 1.18342 0.88392 0.86497 0.91043 1.19589 0.97354 1.37610 0.92049 0.90074 1.26056 0.94933 0.94110 1.00302 1.70150 1.09938 1.26533 1.26998 0.86364 0.80642 0.79455 0.80622 1.19533 1.20147 1.18588 1.21163 0.98537 1.24217 0.92745 0.90882 0.91431 0.91421 0.91251 0.92158 0.90829 0.88483 0.87922 0.77150 0.88962 0.86600 0.91742 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 8.21 37.16 0.31 -1.03 16 2 C -0.03 -0.40 1.31 -90.60 -0.12 -0.52 16 3 C -0.13 -1.44 9.13 37.16 0.34 -1.10 16 4 S -0.30 -3.88 23.92 -107.50 -2.57 -6.45 16 5 C -0.10 -1.29 7.39 37.18 0.27 -1.01 16 6 C 0.17 2.37 3.08 -67.88 -0.21 2.16 16 7 H 0.12 1.83 6.22 -51.93 -0.32 1.51 16 8 N -0.74 -11.77 5.40 -62.19 -0.34 -12.10 16 9 C 0.25 5.27 6.69 -83.65 -0.56 4.71 16 10 C -0.37 -8.00 9.33 -38.95 -0.36 -8.36 16 11 C 0.15 3.60 11.17 -17.60 -0.20 3.41 16 12 N -0.51 -13.88 7.89 -11.21 -0.09 -13.97 16 13 C 0.28 7.65 6.54 -85.02 -0.56 7.10 16 14 C -0.44 -11.64 9.14 -37.69 -0.34 -11.98 16 15 H 0.08 2.04 7.85 -52.49 -0.41 1.62 16 16 C 0.07 1.82 5.49 -17.35 -0.10 1.72 16 17 N -0.72 -19.10 11.49 55.55 0.64 -18.46 16 18 Si 0.90 18.56 29.56 -169.99 -5.03 13.53 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 21 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 22 C -0.34 -8.12 9.72 -38.48 -0.37 -8.49 16 23 H 0.07 0.71 6.81 -51.93 -0.35 0.36 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.68 6.82 -51.93 -0.35 0.32 16 26 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.10 1.26 7.12 -51.93 -0.37 0.89 16 31 H 0.39 5.66 6.59 -40.82 -0.27 5.39 16 32 H 0.09 1.76 6.20 -52.49 -0.33 1.43 16 33 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 34 H 0.27 6.56 8.29 -40.82 -0.34 6.22 16 35 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 299.48 15.07 4.51 4.51 Total: -1.00 -28.73 299.48 -9.27 -38.00 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.50 Total: 8.34 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -1.90 Total: -13.40 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.21 Total: -44.54 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Atomic # 16 Polarization: -3.88 SS G_CDS: -2.57 Total: -6.45 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.73 -9.27 -38.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309504021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.500 kcal (2) G-P(sol) polarization free energy of solvation -28.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds