Wall clock time and date at job start Mon Mar 30 2020 06:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 112.52185 * 2 1 4 4 S 1.81425 * 113.14734 * 230.20099 * 2 1 3 5 5 C 1.81427 * 73.13797 * 273.34565 * 4 2 1 6 6 C 1.53045 * 89.88988 * 331.39830 * 5 4 2 7 7 H 1.08993 * 113.15155 * 277.64656 * 6 5 4 8 8 N 1.46498 * 113.15210 * 148.14464 * 6 5 4 9 9 C 1.39246 * 119.99646 * 104.50261 * 8 6 5 10 10 C 1.39717 * 120.78497 * 359.72407 * 9 8 6 11 11 C 1.38451 * 119.47040 * 179.77247 * 10 9 8 12 12 N 1.31528 * 121.10718 * 0.50664 * 11 10 9 13 13 C 1.33692 * 121.69961 * 359.75006 * 12 11 10 14 14 C 1.41457 * 119.79545 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00384 * 173.72042 * 14 13 12 16 16 C 1.40019 * 119.99850 * 353.71357 * 14 13 12 17 17 N 1.30741 * 120.00219 * 6.29748 * 16 14 13 18 18 Si 1.86800 * 119.99825 * 186.29180 * 16 14 13 19 19 H 1.48502 * 109.46999 * 94.99110 * 18 16 14 20 20 H 1.48498 * 109.47044 * 214.98732 * 18 16 14 21 21 H 1.48493 * 109.47257 * 334.99038 * 18 16 14 22 22 C 1.39028 * 120.78326 * 180.02562 * 9 8 6 23 23 H 1.08999 * 109.47338 * 290.19823 * 1 2 3 24 24 H 1.09007 * 109.47154 * 50.19443 * 1 2 3 25 25 H 1.08999 * 109.47704 * 170.19417 * 1 2 3 26 26 H 1.09001 * 109.46884 * 189.79695 * 3 2 1 27 27 H 1.08997 * 109.47701 * 309.80380 * 3 2 1 28 28 H 1.09007 * 109.46588 * 69.80299 * 3 2 1 29 29 H 1.08997 * 113.14773 * 216.13716 * 5 4 2 30 30 H 1.08996 * 113.14386 * 86.65701 * 5 4 2 31 31 H 0.97002 * 120.00276 * 284.50799 * 8 6 5 32 32 H 1.07999 * 120.25987 * 0.02562 * 10 9 8 33 33 H 1.07997 * 119.44203 * 180.25742 * 11 10 9 34 34 H 0.96994 * 120.00275 * 179.97438 * 17 16 14 35 35 H 1.08000 * 120.55705 * 359.95222 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1161 1.4133 0.0000 4 16 2.2432 -1.0678 -1.2817 5 6 1.9432 -2.1153 0.1690 6 6 2.1316 -0.9009 1.0811 7 1 3.1783 -0.6797 1.2895 8 7 1.3179 -0.9626 2.2978 9 6 1.9120 -1.2760 3.5175 10 6 3.2816 -1.5402 3.5989 11 6 3.8449 -1.8444 4.8265 12 7 3.1106 -1.8986 5.9163 13 6 1.7955 -1.6591 5.8900 14 6 1.0443 -1.7290 7.0866 15 1 0.0042 -1.4382 7.0890 16 6 1.6491 -2.1754 8.2679 17 7 2.9350 -2.4101 8.2957 18 14 0.6188 -2.4355 9.8042 19 1 0.2122 -3.8610 9.8920 20 1 1.4173 -2.0737 11.0028 21 1 -0.5922 -1.5785 9.7390 22 6 1.1554 -1.3396 4.6821 23 1 -0.3634 0.3548 0.9644 24 1 -0.3634 0.6579 -0.7895 25 1 -0.3634 -1.0126 -0.1750 26 1 3.1907 1.3610 -0.1749 27 1 1.6476 2.0010 -0.7894 28 1 1.9274 1.8848 0.9646 29 1 2.7067 -2.8801 0.3105 30 1 0.9328 -2.5229 0.2015 31 1 0.3653 -0.7851 2.2537 32 1 3.8966 -1.5033 2.7118 33 1 4.9043 -2.0444 4.8895 34 1 3.3540 -2.7189 9.1141 35 1 0.0932 -1.1456 4.6580 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309504021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:35 Heat of formation + Delta-G solvation = 38.202727 kcal Electronic energy + Delta-G solvation = -17445.855179 eV Core-core repulsion = 14762.758011 eV Total energy + Delta-G solvation = -2683.097168 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.50694 -39.18561 -35.75362 -34.67871 -31.91855 -31.51560 -29.65601 -28.59901 -27.54219 -24.26192 -23.47569 -22.77271 -20.92346 -19.49813 -17.76038 -17.26185 -16.96441 -16.55888 -15.91524 -15.80507 -15.53777 -15.11298 -14.69373 -14.47001 -14.16714 -14.01077 -13.53053 -13.33695 -13.09704 -12.97647 -12.85311 -12.69804 -12.54963 -12.30846 -12.01983 -11.81832 -11.57824 -11.32786 -11.06056 -10.91016 -9.50056 -9.37577 -8.88303 -8.40445 -8.21943 -6.46433 0.71691 0.85703 1.00252 1.41873 1.43317 1.57391 1.60865 2.26568 2.60725 2.92545 3.29108 3.64845 3.74754 3.93238 4.08473 4.18428 4.32076 4.52006 4.57630 4.65539 4.71137 4.77533 4.78838 4.82725 4.89609 5.11599 5.13155 5.22402 5.25667 5.42359 5.69807 5.76028 5.87304 6.33390 6.60709 6.82417 6.97355 7.12071 8.35542 8.53933 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.041861 B = 0.004247 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.715640 B = 6591.896785 C = 6876.896343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.023 4.023 3 C -0.133 4.133 4 S -0.310 6.310 5 C -0.096 4.096 6 C 0.166 3.834 7 H 0.116 0.884 8 N -0.720 5.720 9 C 0.264 3.736 10 C -0.362 4.362 11 C 0.130 3.870 12 N -0.546 5.546 13 C 0.250 3.750 14 C -0.474 4.474 15 H 0.085 0.915 16 C 0.026 3.974 17 N -0.758 5.758 18 Si 0.984 3.016 19 H -0.265 1.265 20 H -0.269 1.269 21 H -0.255 1.255 22 C -0.359 4.359 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.403 0.597 32 H 0.120 0.880 33 H 0.133 0.867 34 H 0.277 0.723 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.985 3.870 -12.769 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 C -0.192 4.192 4 S -0.083 6.083 5 C -0.246 4.246 6 C 0.056 3.944 7 H 0.133 0.867 8 N -0.353 5.353 9 C 0.156 3.844 10 C -0.390 4.390 11 C -0.035 4.035 12 N -0.262 5.262 13 C 0.125 3.875 14 C -0.506 4.506 15 H 0.103 0.897 16 C -0.195 4.195 17 N -0.380 5.380 18 Si 0.805 3.195 19 H -0.190 1.190 20 H -0.193 1.193 21 H -0.178 1.178 22 C -0.386 4.386 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.241 0.759 32 H 0.138 0.862 33 H 0.151 0.849 34 H 0.087 0.913 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.804 3.584 -13.323 14.079 hybrid contribution -1.214 -0.083 0.773 1.441 sum -4.018 3.502 -12.551 13.636 Atomic orbital electron populations 1.21880 0.89890 1.03717 1.03634 1.24088 0.99897 0.98775 0.90542 1.21830 1.01312 0.92736 1.03279 1.88938 1.82196 1.13240 1.23976 1.25100 1.06278 1.01948 0.91273 1.22381 0.97087 0.91662 0.83243 0.86662 1.44375 1.10015 1.77847 1.03036 1.17634 0.91861 0.89651 0.85245 1.21114 0.94119 1.24687 0.99069 1.22715 0.99251 0.92676 0.88900 1.68697 1.06573 1.22122 1.28769 1.18774 0.88856 0.87288 0.92541 1.19939 0.97830 1.39574 0.93224 0.89712 1.26961 0.96056 0.93137 1.03336 1.70253 1.11763 1.27757 1.28218 0.85174 0.78835 0.79416 0.76100 1.19008 1.19323 1.17848 1.21247 0.99199 1.25117 0.93000 0.90372 0.89994 0.91204 0.91547 0.90660 0.90938 0.88680 0.87003 0.75934 0.86174 0.84942 0.91266 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.21 71.98 0.59 -1.67 16 2 C -0.02 -0.46 1.31 -10.78 -0.01 -0.48 16 3 C -0.13 -2.53 9.13 71.98 0.66 -1.87 16 4 S -0.31 -7.27 23.92 -56.49 -1.35 -8.62 16 5 C -0.10 -2.24 7.39 72.00 0.53 -1.71 16 6 C 0.17 4.15 3.08 45.02 0.14 4.29 16 7 H 0.12 3.14 6.22 -2.39 -0.01 3.13 16 8 N -0.72 -21.49 5.40 -350.68 -1.89 -23.38 16 9 C 0.26 10.81 6.69 38.51 0.26 11.07 16 10 C -0.36 -15.26 9.33 22.68 0.21 -15.04 16 11 C 0.13 6.27 11.17 84.79 0.95 7.22 16 12 N -0.55 -30.84 7.89 -189.38 -1.49 -32.34 16 13 C 0.25 13.96 6.54 40.18 0.26 14.22 16 14 C -0.47 -26.11 9.14 23.50 0.21 -25.90 16 15 H 0.08 4.37 7.85 -2.91 -0.02 4.35 16 16 C 0.03 1.37 5.49 85.29 0.47 1.84 16 17 N -0.76 -41.70 11.49 21.84 0.25 -41.44 16 18 Si 0.98 38.56 29.56 68.60 2.03 40.59 16 19 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 20 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 21 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 22 C -0.36 -17.23 9.72 22.99 0.22 -17.00 16 23 H 0.08 1.28 6.81 -2.39 -0.02 1.27 16 24 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.07 1.18 6.82 -2.39 -0.02 1.16 16 26 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.11 2.44 7.12 -2.39 -0.02 2.43 16 31 H 0.40 10.62 6.59 -92.71 -0.61 10.01 16 32 H 0.12 4.32 6.20 -2.91 -0.02 4.30 16 33 H 0.13 5.71 8.06 -2.91 -0.02 5.69 16 34 H 0.28 13.75 8.29 -92.71 -0.77 12.98 16 35 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -63.09 299.48 2.52 -60.57 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.49 Total: 29.66 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 4.49 Total: -25.04 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -3.14 Total: -97.16 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Atomic # 16 Polarization: -7.27 SS G_CDS: -1.35 Total: -8.62 kcal Total: -63.09 2.52 -60.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309504021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.774 kcal (2) G-P(sol) polarization free energy of solvation -63.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds