Wall clock time and date at job start Mon Mar 30 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86805 * 120.00251 * 2 1 4 4 H 1.48500 * 109.46608 * 240.00132 * 3 2 1 5 5 H 1.48497 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47263 * 119.99856 * 3 2 1 7 7 C 1.40015 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00464 * 179.97438 * 7 2 1 9 9 C 1.41454 * 119.99726 * 0.02562 * 7 2 1 10 10 C 1.40399 * 119.79714 * 179.97438 * 9 7 2 11 11 C 1.39025 * 118.88256 * 180.02562 * 10 9 7 12 12 N 1.39252 * 120.78277 * 179.72324 * 11 10 9 13 13 C 1.46502 * 119.99599 * 180.02562 * 12 11 10 14 14 C 1.53007 * 109.46828 * 179.97438 * 13 12 11 15 15 H 1.08999 * 110.70072 * 303.31738 * 14 13 12 16 16 C 1.54253 * 110.78741 * 180.02562 * 14 13 12 17 17 C 1.52334 * 112.58826 * 217.20346 * 16 14 13 18 18 C 1.54264 * 112.58765 * 359.97438 * 17 16 14 19 19 S 1.83957 * 102.57926 * 24.53142 * 18 17 16 20 20 C 1.39714 * 118.43233 * 0.02562 * 11 10 9 21 21 C 1.38450 * 119.46939 * 359.97438 * 20 11 10 22 22 N 1.31533 * 121.11018 * 359.97438 * 21 20 11 23 23 H 0.97002 * 119.99886 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.56005 * 0.04310 * 10 9 7 25 25 H 0.97000 * 120.00398 * 0.02562 * 12 11 10 26 26 H 1.08991 * 109.47221 * 300.00420 * 13 12 11 27 27 H 1.09004 * 109.46875 * 60.00611 * 13 12 11 28 28 H 1.09004 * 108.86601 * 338.01871 * 16 14 13 29 29 H 1.08999 * 108.87328 * 96.37945 * 16 14 13 30 30 H 1.08998 * 108.87041 * 120.81637 * 17 16 14 31 31 H 1.09004 * 108.86372 * 239.32092 * 17 16 14 32 32 H 1.08997 * 110.78590 * 142.80355 * 18 17 16 33 33 H 1.09000 * 110.78404 * 266.26105 * 18 17 16 34 34 H 1.07999 * 120.26207 * 179.97438 * 20 11 10 35 35 H 1.08005 * 119.44137 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0952 1.6963 -1.2126 5 1 1.2766 2.7465 -0.0006 6 1 3.0953 1.6964 1.2125 7 6 2.0075 -1.2126 0.0005 8 1 3.0875 -1.2126 0.0001 9 6 1.3002 -2.4376 0.0005 10 6 2.0065 -3.6510 0.0005 11 6 1.2922 -4.8437 0.0000 12 7 1.9523 -6.0698 -0.0058 13 6 1.1824 -7.3162 -0.0068 14 6 2.1417 -8.5081 -0.0142 15 1 2.8164 -8.4545 -0.8686 16 6 1.3615 -9.8388 -0.0161 17 6 2.0348 -10.9131 0.8283 18 6 3.3392 -10.4183 1.4867 19 16 3.0841 -8.5981 1.5629 20 6 -0.1037 -4.7831 -0.0011 21 6 -0.7319 -3.5494 -0.0010 22 7 -0.0367 -2.4328 0.0005 23 1 -0.4850 0.8401 -0.0004 24 1 3.0864 -3.6578 0.0012 25 1 2.9219 -6.0986 -0.0091 26 1 0.5573 -7.3578 0.8850 27 1 0.5514 -7.3527 -0.8949 28 1 0.3594 -9.6604 0.3740 29 1 1.2785 -10.1974 -1.0421 30 1 1.3444 -11.2319 1.6092 31 1 2.2658 -11.7678 0.1925 32 1 3.4499 -10.8356 2.4875 33 1 4.2020 -10.6623 0.8669 34 1 -0.6879 -5.6915 -0.0019 35 1 -1.8109 -3.5031 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309556429.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:46 Heat of formation + Delta-G solvation = 26.657153 kcal Electronic energy + Delta-G solvation = -16889.608674 eV Core-core repulsion = 14206.010852 eV Total energy + Delta-G solvation = -2683.597822 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.31517 -36.88747 -35.06588 -33.26644 -31.16186 -29.79870 -28.23987 -26.10639 -25.43831 -23.17963 -21.60156 -20.43934 -20.39928 -17.52319 -16.97659 -16.14150 -15.61983 -15.02390 -14.79707 -14.50493 -14.24136 -14.01465 -13.31236 -13.23004 -12.90180 -12.53863 -12.15832 -12.07277 -11.81559 -11.63339 -11.49325 -11.10896 -11.06339 -10.79158 -10.59246 -10.35002 -10.03529 -9.70865 -9.63004 -9.05520 -7.79897 -7.51420 -7.40602 -6.63442 -6.27047 -4.41903 1.69446 2.18042 2.89676 3.14428 3.17097 3.25362 3.42111 3.91994 4.04091 4.36825 4.45306 4.60933 4.86124 4.89157 4.96653 5.01955 5.24938 5.37659 5.58640 5.65331 5.73438 5.79306 5.98782 6.12041 6.19762 6.51052 6.75506 6.99071 7.17253 7.26023 7.55883 7.69137 7.75463 8.33473 8.45489 8.52417 8.85062 9.10184 10.30721 10.46702 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.044108 B = 0.003741 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.657014 B = 7482.341125 C = 7953.408851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.436 4.436 8 H 0.080 0.920 9 C 0.283 3.717 10 C -0.344 4.344 11 C 0.256 3.744 12 N -0.754 5.754 13 C 0.155 3.845 14 C -0.046 4.046 15 H 0.098 0.902 16 C -0.121 4.121 17 C -0.123 4.123 18 C -0.077 4.077 19 S -0.276 6.276 20 C -0.372 4.372 21 C 0.149 3.851 22 N -0.507 5.507 23 H 0.271 0.729 24 H 0.094 0.906 25 H 0.391 0.609 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.040 -17.615 -0.052 17.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.154 4.154 3 Si 0.730 3.270 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.467 4.467 8 H 0.098 0.902 9 C 0.159 3.841 10 C -0.371 4.371 11 C 0.151 3.849 12 N -0.388 5.388 13 C 0.029 3.971 14 C -0.175 4.175 15 H 0.117 0.883 16 C -0.161 4.161 17 C -0.162 4.162 18 C -0.225 4.225 19 S -0.050 6.050 20 C -0.400 4.400 21 C -0.018 4.018 22 N -0.221 5.221 23 H 0.082 0.918 24 H 0.112 0.888 25 H 0.225 0.775 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.645 -15.902 0.770 16.139 hybrid contribution 0.916 -1.125 -0.807 1.659 sum 3.560 -17.027 -0.037 17.395 Atomic orbital electron populations 1.70153 1.07104 1.27538 1.29035 1.26056 0.94860 1.00891 0.93571 0.86439 0.80097 0.80705 0.79804 1.19035 1.20300 1.19009 1.19542 0.94063 0.89446 1.43671 0.90187 1.18319 0.88137 0.91197 0.86481 1.21154 0.98022 0.91855 1.26032 1.17624 0.91598 0.84215 0.91504 1.44303 1.07218 1.02183 1.85059 1.20975 0.92724 0.81833 1.01580 1.24202 0.98956 0.97818 0.96533 0.88345 1.22034 1.00616 0.92188 1.01260 1.21982 0.95837 0.98824 0.99571 1.24152 1.00217 0.93749 1.04385 1.88464 1.73614 1.10304 1.32605 1.20822 0.92255 0.98135 1.28742 1.22282 0.98465 0.88440 0.92598 1.68757 1.07203 1.26468 1.19676 0.91778 0.88814 0.77489 0.91818 0.91720 0.90080 0.90530 0.90570 0.90900 0.87935 0.89519 0.89158 0.86673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.81 11.46 55.55 0.64 -19.18 16 2 C 0.07 1.89 5.50 -17.35 -0.10 1.79 16 3 Si 0.91 19.25 29.56 -169.99 -5.02 14.23 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 7 C -0.44 -12.22 9.14 -37.69 -0.34 -12.57 16 8 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 9 C 0.28 8.12 6.55 -85.02 -0.56 7.56 16 10 C -0.34 -8.90 9.72 -38.48 -0.37 -9.27 16 11 C 0.26 5.93 6.69 -83.65 -0.56 5.37 16 12 N -0.75 -13.85 5.57 -58.50 -0.33 -14.18 16 13 C 0.16 2.26 4.28 -4.04 -0.02 2.24 16 14 C -0.05 -0.53 3.36 -26.07 -0.09 -0.61 16 15 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.12 -1.04 5.93 -26.42 -0.16 -1.19 16 17 C -0.12 -0.90 6.30 -26.41 -0.17 -1.07 16 18 C -0.08 -0.65 7.46 37.82 0.28 -0.37 16 19 S -0.28 -3.54 22.49 -107.50 -2.42 -5.96 16 20 C -0.37 -8.63 9.40 -38.95 -0.37 -8.99 16 21 C 0.15 3.77 11.17 -17.60 -0.20 3.58 16 22 N -0.51 -14.59 7.86 -11.21 -0.09 -14.68 16 23 H 0.27 6.79 8.29 -40.82 -0.34 6.45 16 24 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 25 H 0.39 6.87 8.39 -40.82 -0.34 6.52 16 26 H 0.06 0.99 7.99 -51.93 -0.42 0.58 16 27 H 0.06 0.92 7.98 -51.93 -0.41 0.50 16 28 H 0.08 0.70 7.78 -51.93 -0.40 0.29 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.84 6.87 -52.49 -0.36 1.48 16 35 H 0.12 2.59 8.06 -52.48 -0.42 2.16 16 LS Contribution 303.88 15.07 4.58 4.58 Total: -1.00 -31.21 303.88 -10.14 -41.36 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -4.87 Total: 7.36 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -2.64 Total: -13.54 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.22 Total: -48.03 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.42 Total: -5.96 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.21 -10.14 -41.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309556429.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.016 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds