Wall clock time and date at job start Mon Mar 30 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86805 * 120.00251 * 2 1 4 4 H 1.48500 * 109.46608 * 240.00132 * 3 2 1 5 5 H 1.48497 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47263 * 119.99856 * 3 2 1 7 7 C 1.40015 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00464 * 179.97438 * 7 2 1 9 9 C 1.41454 * 119.99726 * 0.02562 * 7 2 1 10 10 C 1.40399 * 119.79714 * 179.97438 * 9 7 2 11 11 C 1.39025 * 118.88256 * 180.02562 * 10 9 7 12 12 N 1.39252 * 120.78277 * 179.72324 * 11 10 9 13 13 C 1.46502 * 119.99599 * 180.02562 * 12 11 10 14 14 C 1.53007 * 109.46828 * 179.97438 * 13 12 11 15 15 H 1.08999 * 110.70072 * 303.31738 * 14 13 12 16 16 C 1.54253 * 110.78741 * 180.02562 * 14 13 12 17 17 C 1.52334 * 112.58826 * 217.20346 * 16 14 13 18 18 C 1.54264 * 112.58765 * 359.97438 * 17 16 14 19 19 S 1.83957 * 102.57926 * 24.53142 * 18 17 16 20 20 C 1.39714 * 118.43233 * 0.02562 * 11 10 9 21 21 C 1.38450 * 119.46939 * 359.97438 * 20 11 10 22 22 N 1.31533 * 121.11018 * 359.97438 * 21 20 11 23 23 H 0.97002 * 119.99886 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.56005 * 0.04310 * 10 9 7 25 25 H 0.97000 * 120.00398 * 0.02562 * 12 11 10 26 26 H 1.08991 * 109.47221 * 300.00420 * 13 12 11 27 27 H 1.09004 * 109.46875 * 60.00611 * 13 12 11 28 28 H 1.09004 * 108.86601 * 338.01871 * 16 14 13 29 29 H 1.08999 * 108.87328 * 96.37945 * 16 14 13 30 30 H 1.08998 * 108.87041 * 120.81637 * 17 16 14 31 31 H 1.09004 * 108.86372 * 239.32092 * 17 16 14 32 32 H 1.08997 * 110.78590 * 142.80355 * 18 17 16 33 33 H 1.09000 * 110.78404 * 266.26105 * 18 17 16 34 34 H 1.07999 * 120.26207 * 179.97438 * 20 11 10 35 35 H 1.08005 * 119.44137 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0952 1.6963 -1.2126 5 1 1.2766 2.7465 -0.0006 6 1 3.0953 1.6964 1.2125 7 6 2.0075 -1.2126 0.0005 8 1 3.0875 -1.2126 0.0001 9 6 1.3002 -2.4376 0.0005 10 6 2.0065 -3.6510 0.0005 11 6 1.2922 -4.8437 0.0000 12 7 1.9523 -6.0698 -0.0058 13 6 1.1824 -7.3162 -0.0068 14 6 2.1417 -8.5081 -0.0142 15 1 2.8164 -8.4545 -0.8686 16 6 1.3615 -9.8388 -0.0161 17 6 2.0348 -10.9131 0.8283 18 6 3.3392 -10.4183 1.4867 19 16 3.0841 -8.5981 1.5629 20 6 -0.1037 -4.7831 -0.0011 21 6 -0.7319 -3.5494 -0.0010 22 7 -0.0367 -2.4328 0.0005 23 1 -0.4850 0.8401 -0.0004 24 1 3.0864 -3.6578 0.0012 25 1 2.9219 -6.0986 -0.0091 26 1 0.5573 -7.3578 0.8850 27 1 0.5514 -7.3527 -0.8949 28 1 0.3594 -9.6604 0.3740 29 1 1.2785 -10.1974 -1.0421 30 1 1.3444 -11.2319 1.6092 31 1 2.2658 -11.7678 0.1925 32 1 3.4499 -10.8356 2.4875 33 1 4.2020 -10.6623 0.8669 34 1 -0.6879 -5.6915 -0.0019 35 1 -1.8109 -3.5031 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309556429.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:46 Heat of formation + Delta-G solvation = 7.805392 kcal Electronic energy + Delta-G solvation = -16890.426148 eV Core-core repulsion = 14206.010852 eV Total energy + Delta-G solvation = -2684.415295 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.16092 -38.00816 -36.36605 -35.15560 -32.46554 -31.76388 -29.67575 -27.74148 -26.75810 -24.38404 -23.40628 -22.25954 -21.23323 -19.36209 -17.93100 -17.56383 -17.29586 -16.48628 -16.09256 -15.85741 -15.72605 -15.14754 -14.93576 -14.59908 -14.25559 -14.02652 -13.80854 -13.36554 -13.01888 -12.84820 -12.62164 -12.55786 -12.50276 -12.34009 -12.09515 -11.61059 -11.47347 -11.36329 -10.98580 -10.73773 -9.53402 -9.41804 -8.79527 -8.37193 -8.23444 -6.49888 0.83163 0.98153 1.37590 1.40877 1.41103 1.53885 1.60841 2.25268 2.59781 2.91338 3.55984 3.60199 3.92365 4.04196 4.10228 4.22694 4.28911 4.29726 4.49877 4.56750 4.68912 4.77344 4.81356 4.84906 5.05017 5.05754 5.09236 5.21662 5.22141 5.38930 5.68787 5.71908 5.87241 6.29902 6.59819 6.81324 6.94195 7.09171 8.32311 8.51636 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.044108 B = 0.003741 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.657014 B = 7482.341125 C = 7953.408851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.025 3.975 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.476 4.476 8 H 0.082 0.918 9 C 0.252 3.748 10 C -0.371 4.371 11 C 0.263 3.737 12 N -0.743 5.743 13 C 0.152 3.848 14 C -0.028 4.028 15 H 0.105 0.895 16 C -0.119 4.119 17 C -0.121 4.121 18 C -0.056 4.056 19 S -0.363 6.363 20 C -0.365 4.365 21 C 0.132 3.868 22 N -0.546 5.546 23 H 0.278 0.722 24 H 0.095 0.905 25 H 0.395 0.605 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 -19.621 -0.537 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.507 4.507 8 H 0.100 0.900 9 C 0.128 3.872 10 C -0.398 4.398 11 C 0.155 3.845 12 N -0.375 5.375 13 C 0.027 3.973 14 C -0.157 4.157 15 H 0.123 0.877 16 C -0.158 4.158 17 C -0.159 4.159 18 C -0.204 4.204 19 S -0.138 6.138 20 C -0.393 4.393 21 C -0.034 4.034 22 N -0.261 5.261 23 H 0.089 0.911 24 H 0.113 0.887 25 H 0.230 0.770 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.118 0.882 34 H 0.140 0.860 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.891 -17.979 0.284 18.212 hybrid contribution 0.820 -0.742 -0.641 1.279 sum 3.711 -18.721 -0.357 19.089 Atomic orbital electron populations 1.70252 1.08840 1.28978 1.29754 1.27002 0.95764 1.04473 0.92411 0.85201 0.78623 0.75433 0.79993 1.18292 1.18991 1.18443 1.19911 0.94480 0.90676 1.45672 0.89961 1.18742 0.88743 0.92538 0.87216 1.21234 0.98237 0.92508 1.27777 1.17699 0.91848 0.85257 0.89734 1.44405 1.07697 1.02006 1.83398 1.21173 0.93275 0.81222 1.01625 1.24124 0.98270 0.97961 0.95337 0.87699 1.22077 1.00097 0.90758 1.02915 1.21994 0.95053 0.98955 0.99940 1.24277 1.01557 0.89000 1.05529 1.88767 1.74526 1.15983 1.34476 1.21088 0.92493 0.98639 1.27093 1.22763 0.99632 0.88672 0.92296 1.68705 1.07568 1.28316 1.21560 0.91132 0.88702 0.77049 0.92586 0.90538 0.90123 0.88359 0.90023 0.88327 0.86918 0.88220 0.85977 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -42.93 11.46 21.83 0.25 -42.68 16 2 C 0.02 1.35 5.50 85.29 0.47 1.81 16 3 Si 0.99 40.10 29.56 68.60 2.03 42.12 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.48 -27.72 9.14 23.49 0.21 -27.51 16 8 H 0.08 4.51 7.85 -2.91 -0.02 4.49 16 9 C 0.25 15.02 6.55 40.18 0.26 15.28 16 10 C -0.37 -19.77 9.72 22.99 0.22 -19.55 16 11 C 0.26 12.18 6.69 38.51 0.26 12.44 16 12 N -0.74 -26.71 5.57 -338.98 -1.89 -28.60 16 13 C 0.15 4.14 4.28 86.38 0.37 4.51 16 14 C -0.03 -0.58 3.36 31.02 0.10 -0.48 16 15 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 16 C -0.12 -1.62 5.93 30.80 0.18 -1.43 16 17 C -0.12 -1.30 6.30 30.80 0.19 -1.11 16 18 C -0.06 -0.79 7.46 72.41 0.54 -0.25 16 19 S -0.36 -8.93 22.49 -56.49 -1.27 -10.20 16 20 C -0.37 -16.69 9.40 22.68 0.21 -16.47 16 21 C 0.13 6.72 11.17 84.79 0.95 7.66 16 22 N -0.55 -32.41 7.86 -189.37 -1.49 -33.90 16 23 H 0.28 14.21 8.29 -92.71 -0.77 13.44 16 24 H 0.09 4.85 8.06 -2.91 -0.02 4.83 16 25 H 0.40 13.73 8.39 -92.71 -0.78 12.95 16 26 H 0.06 1.65 7.99 -2.39 -0.02 1.63 16 27 H 0.08 1.95 7.98 -2.39 -0.02 1.93 16 28 H 0.08 1.13 7.78 -2.39 -0.02 1.11 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.12 4.71 6.87 -2.91 -0.02 4.69 16 35 H 0.14 6.15 8.06 -2.91 -0.02 6.13 16 Total: -1.00 -70.51 303.88 1.92 -68.59 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.31 Total: 29.76 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: 3.98 Total: -25.09 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -3.13 Total: -105.18 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.12 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.27 Total: -10.20 kcal Total: -70.51 1.92 -68.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309556429.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.392 kcal (2) G-P(sol) polarization free energy of solvation -70.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds