Wall clock time and date at job start Mon Mar 30 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38427 * 122.53962 * 2 1 4 4 C 1.33393 * 114.92075 * 180.27713 * 3 2 1 5 5 S 1.75890 * 109.59051 * 359.77167 * 4 3 2 6 6 C 1.33392 * 122.54116 * 179.83651 * 2 1 3 7 7 C 1.50701 * 125.19966 * 0.02562 * 6 2 1 8 8 N 1.46901 * 109.46921 * 89.71971 * 7 6 2 9 9 C 1.46906 * 110.99793 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.46978 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47454 * 304.99901 * 10 9 8 12 12 C 1.47198 * 109.47439 * 64.99788 * 10 9 8 13 13 N 6.56227 * 103.61263 * 219.11866 * 2 1 3 14 14 C 1.53001 * 109.47271 * 185.00310 * 10 9 8 15 15 C 1.50696 * 109.47339 * 175.00034 * 14 10 9 16 16 H 1.07999 * 120.00490 * 359.97438 * 15 14 10 17 17 C 1.37885 * 119.99921 * 179.97438 * 15 14 10 18 18 N 1.31510 * 119.99748 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99833 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47236 * 90.00328 * 19 17 15 21 21 H 1.48502 * 109.46942 * 209.99977 * 19 17 15 22 22 H 1.48502 * 109.47351 * 330.00010 * 19 17 15 23 23 H 1.09006 * 109.46888 * 270.16701 * 1 2 3 24 24 H 1.09000 * 109.46973 * 30.16503 * 1 2 3 25 25 H 1.09003 * 109.46896 * 150.16686 * 1 2 3 26 26 H 1.08001 * 122.54146 * 0.04564 * 3 2 1 27 27 H 1.07996 * 125.20270 * 179.75230 * 4 3 2 28 28 H 1.09002 * 109.47060 * 209.72152 * 7 6 2 29 29 H 1.09001 * 109.47380 * 329.72240 * 7 6 2 30 30 H 1.00899 * 111.00283 * 303.95218 * 8 7 6 31 31 H 1.08995 * 109.47087 * 299.99901 * 9 8 7 32 32 H 1.09002 * 109.46903 * 59.99922 * 9 8 7 33 33 H 1.09005 * 109.46867 * 294.99797 * 14 10 9 34 34 H 1.08998 * 109.47402 * 54.99404 * 14 10 9 35 35 H 0.97007 * 119.99801 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9901 -0.0059 5 16 3.9386 -0.7305 -0.0052 6 6 2.2245 -1.1245 0.0032 7 6 1.6537 -2.5192 0.0066 8 7 1.4625 -2.9734 -1.3773 9 6 0.9066 -4.3327 -1.4131 10 6 0.7226 -4.7703 -2.8676 11 1 0.1112 -4.0367 -3.3932 12 6 2.0382 -4.8702 -3.5201 13 7 3.0515 -4.9483 -4.0240 14 6 0.0292 -6.1336 -2.9063 15 6 -0.2625 -6.5084 -4.3364 16 1 0.0181 -5.8409 -5.1377 17 6 -0.8878 -7.7037 -4.6221 18 7 -1.2291 -8.5168 -3.6464 19 14 -1.2500 -8.1679 -6.3948 20 1 -0.0993 -8.9218 -6.9541 21 1 -2.4685 -9.0153 -6.4454 22 1 -1.4702 -6.9359 -7.1941 23 1 -0.3633 0.0030 1.0277 24 1 -0.3633 0.8885 -0.5164 25 1 -0.3633 -0.8915 -0.5113 26 1 1.7965 2.1464 0.0007 27 1 4.3078 1.7822 -0.0106 28 1 2.3418 -3.1922 0.5182 29 1 0.6945 -2.5180 0.5244 30 1 0.8794 -2.3303 -1.8916 31 1 1.5899 -5.0180 -0.9116 32 1 -0.0577 -4.3445 -0.9050 33 1 0.6801 -6.8850 -2.4593 34 1 -0.9046 -6.0823 -2.3464 35 1 -1.6693 -9.3575 -3.8473 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309612243.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:27 Heat of formation + Delta-G solvation = 40.612157 kcal Electronic energy + Delta-G solvation = -16644.662366 eV Core-core repulsion = 13961.669679 eV Total energy + Delta-G solvation = -2682.992687 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.76653 -37.20878 -35.20651 -33.58489 -32.02587 -30.69517 -28.72183 -26.40285 -24.36954 -22.71568 -22.33079 -21.71365 -18.40881 -17.73027 -16.71162 -16.42112 -15.41884 -15.04053 -14.85371 -14.45427 -14.12107 -13.72735 -13.45003 -12.99726 -12.70601 -12.49016 -12.22404 -12.14409 -12.02685 -11.93613 -11.62873 -11.49721 -11.21341 -11.04961 -10.74111 -10.69704 -10.53745 -10.24360 -9.58118 -9.25185 -8.76080 -8.46770 -8.41587 -8.30229 -6.10346 -4.13418 0.89536 1.59398 1.97789 2.56338 3.29768 3.36363 3.39649 3.76163 3.85885 4.28839 4.42915 4.74036 4.79478 4.92830 5.04977 5.27517 5.27954 5.29703 5.39706 5.47155 5.54292 5.61887 5.72286 5.79500 5.95981 5.98895 6.29388 6.35560 6.42966 6.48016 7.00485 7.40164 7.43143 7.52147 7.85023 8.22408 8.59947 8.91372 9.52140 11.00555 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.034770 B = 0.003623 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.093087 B = 7726.185749 C = 8010.496074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.109 4.109 3 C -0.131 4.131 4 C -0.222 4.222 5 S 0.117 5.883 6 C -0.169 4.169 7 C 0.129 3.871 8 N -0.688 5.688 9 C 0.066 3.934 10 C 0.010 3.990 11 H 0.099 0.901 12 C 0.254 3.746 13 N -0.477 5.477 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.136 0.864 27 H 0.161 0.839 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.344 0.656 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.026 0.974 34 H 0.038 0.962 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 17.888 11.334 21.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.162 4.162 4 C -0.358 4.358 5 S 0.382 5.618 6 C -0.287 4.287 7 C -0.002 4.002 8 N -0.320 5.320 9 C -0.064 4.064 10 C -0.012 4.012 11 H 0.117 0.883 12 C -0.063 4.063 13 N -0.154 5.154 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.197 1.197 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.154 0.846 27 H 0.178 0.822 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.162 0.838 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.355 16.529 10.535 20.605 hybrid contribution -2.704 0.752 -0.577 2.866 sum 3.650 17.281 9.957 20.276 Atomic orbital electron populations 1.20512 0.89858 1.02776 1.02159 1.18861 0.97352 0.91662 1.04340 1.19995 0.92873 0.99104 1.04211 1.25600 0.99776 0.99530 1.10862 1.84409 1.05888 0.99559 1.71897 1.24246 0.95917 0.98614 1.09919 1.20322 0.99275 0.89559 0.90997 1.60556 1.55212 1.04053 1.12188 1.22103 0.98784 0.89065 0.96431 1.19205 0.86582 1.03329 0.92097 0.88314 1.28765 0.93988 0.91133 0.92374 1.80910 1.13247 1.10857 1.10404 1.19169 0.95596 0.87641 0.98285 1.21144 1.38993 1.04219 0.92100 0.92488 1.24952 0.95460 0.96293 0.97258 1.69938 1.40875 1.10823 1.31410 0.86590 0.77824 0.78623 0.85033 1.20628 1.21107 1.19733 0.91361 0.91456 0.91586 0.84625 0.82181 0.90023 0.92983 0.83793 0.90347 0.93043 0.95531 0.94425 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 9.60 36.01 0.35 -0.43 16 2 C -0.11 -1.13 5.80 -106.25 -0.62 -1.74 16 3 C -0.13 -1.27 9.98 -41.21 -0.41 -1.68 16 4 C -0.22 -2.16 11.23 29.04 0.33 -1.83 16 5 S 0.12 1.32 23.33 -107.50 -2.51 -1.19 16 6 C -0.17 -1.93 6.02 -36.00 -0.22 -2.14 16 7 C 0.13 1.45 5.54 -4.97 -0.03 1.42 16 8 N -0.69 -9.00 6.19 -115.05 -0.71 -9.71 16 9 C 0.07 0.94 5.05 -3.82 -0.02 0.92 16 10 C 0.01 0.18 2.35 -93.41 -0.22 -0.04 16 11 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 12 C 0.25 5.36 13.66 -20.82 -0.28 5.08 16 13 N -0.48 -11.01 18.53 42.09 0.78 -10.23 16 14 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 15 C -0.53 -13.97 8.60 -34.44 -0.30 -14.27 16 16 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 19 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.49 8.13 -51.93 -0.42 0.06 16 25 H 0.07 0.55 7.07 -51.93 -0.37 0.18 16 26 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 27 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.52 7.33 -51.93 -0.38 0.13 16 30 H 0.34 4.17 8.53 -39.29 -0.34 3.84 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -30.51 319.97 -8.39 -38.90 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -4.84 Total: -1.67 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -1.64 Total: -12.48 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.80 Total: -44.64 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.51 Total: -1.19 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.51 -8.39 -38.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309612243.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.512 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds