Wall clock time and date at job start Mon Mar 30 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38427 * 122.53962 * 2 1 4 4 C 1.33393 * 114.92075 * 180.27713 * 3 2 1 5 5 S 1.75890 * 109.59051 * 359.77167 * 4 3 2 6 6 C 1.33392 * 122.54116 * 179.83651 * 2 1 3 7 7 C 1.50701 * 125.19966 * 0.02562 * 6 2 1 8 8 N 1.46901 * 109.46921 * 89.71971 * 7 6 2 9 9 C 1.46906 * 110.99793 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.46978 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47454 * 304.99901 * 10 9 8 12 12 C 1.47198 * 109.47439 * 64.99788 * 10 9 8 13 13 N 6.56227 * 103.61263 * 219.11866 * 2 1 3 14 14 C 1.53001 * 109.47271 * 185.00310 * 10 9 8 15 15 C 1.50696 * 109.47339 * 175.00034 * 14 10 9 16 16 H 1.07999 * 120.00490 * 359.97438 * 15 14 10 17 17 C 1.37885 * 119.99921 * 179.97438 * 15 14 10 18 18 N 1.31510 * 119.99748 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99833 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47236 * 90.00328 * 19 17 15 21 21 H 1.48502 * 109.46942 * 209.99977 * 19 17 15 22 22 H 1.48502 * 109.47351 * 330.00010 * 19 17 15 23 23 H 1.09006 * 109.46888 * 270.16701 * 1 2 3 24 24 H 1.09000 * 109.46973 * 30.16503 * 1 2 3 25 25 H 1.09003 * 109.46896 * 150.16686 * 1 2 3 26 26 H 1.08001 * 122.54146 * 0.04564 * 3 2 1 27 27 H 1.07996 * 125.20270 * 179.75230 * 4 3 2 28 28 H 1.09002 * 109.47060 * 209.72152 * 7 6 2 29 29 H 1.09001 * 109.47380 * 329.72240 * 7 6 2 30 30 H 1.00899 * 111.00283 * 303.95218 * 8 7 6 31 31 H 1.08995 * 109.47087 * 299.99901 * 9 8 7 32 32 H 1.09002 * 109.46903 * 59.99922 * 9 8 7 33 33 H 1.09005 * 109.46867 * 294.99797 * 14 10 9 34 34 H 1.08998 * 109.47402 * 54.99404 * 14 10 9 35 35 H 0.97007 * 119.99801 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9901 -0.0059 5 16 3.9386 -0.7305 -0.0052 6 6 2.2245 -1.1245 0.0032 7 6 1.6537 -2.5192 0.0066 8 7 1.4625 -2.9734 -1.3773 9 6 0.9066 -4.3327 -1.4131 10 6 0.7226 -4.7703 -2.8676 11 1 0.1112 -4.0367 -3.3932 12 6 2.0382 -4.8702 -3.5201 13 7 3.0515 -4.9483 -4.0240 14 6 0.0292 -6.1336 -2.9063 15 6 -0.2625 -6.5084 -4.3364 16 1 0.0181 -5.8409 -5.1377 17 6 -0.8878 -7.7037 -4.6221 18 7 -1.2291 -8.5168 -3.6464 19 14 -1.2500 -8.1679 -6.3948 20 1 -0.0993 -8.9218 -6.9541 21 1 -2.4685 -9.0153 -6.4454 22 1 -1.4702 -6.9359 -7.1941 23 1 -0.3633 0.0030 1.0277 24 1 -0.3633 0.8885 -0.5164 25 1 -0.3633 -0.8915 -0.5113 26 1 1.7965 2.1464 0.0007 27 1 4.3078 1.7822 -0.0106 28 1 2.3418 -3.1922 0.5182 29 1 0.6945 -2.5180 0.5244 30 1 0.8794 -2.3303 -1.8916 31 1 1.5899 -5.0180 -0.9116 32 1 -0.0577 -4.3445 -0.9050 33 1 0.6801 -6.8850 -2.4593 34 1 -0.9046 -6.0823 -2.3464 35 1 -1.6693 -9.3575 -3.8473 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309612243.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:27 Heat of formation + Delta-G solvation = 22.704780 kcal Electronic energy + Delta-G solvation = -16645.438888 eV Core-core repulsion = 13961.669679 eV Total energy + Delta-G solvation = -2683.769209 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.59538 -38.58839 -36.56530 -35.40079 -33.58783 -31.66881 -29.74984 -27.91983 -25.46095 -23.95190 -23.47627 -23.13758 -19.17465 -18.89334 -18.38620 -17.91370 -16.64790 -16.18878 -15.97817 -15.81384 -15.38299 -14.78564 -14.47539 -14.25031 -14.19181 -13.75681 -13.65884 -13.28066 -13.13976 -13.07335 -12.94282 -12.78665 -12.54593 -12.48950 -12.30824 -12.27576 -11.89489 -11.53523 -11.39928 -11.14655 -10.54867 -9.59257 -9.32665 -9.17572 -8.18881 -6.26762 0.11171 0.80384 1.20209 1.40418 1.43032 1.51846 1.81622 2.08994 2.15777 2.42275 3.16612 3.25970 3.39597 3.93162 4.12380 4.13851 4.33287 4.38184 4.56426 4.66249 4.67681 4.77328 4.83056 4.85362 4.89457 5.01499 5.18773 5.21365 5.48202 5.56416 5.63333 5.70305 5.79992 5.96647 6.22081 6.47104 6.84263 6.94483 7.41771 8.91982 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.034770 B = 0.003623 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.093087 B = 7726.185749 C = 8010.496074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.106 4.106 3 C -0.139 4.139 4 C -0.215 4.215 5 S 0.070 5.930 6 C -0.187 4.187 7 C 0.133 3.867 8 N -0.698 5.698 9 C 0.079 3.921 10 C 0.020 3.980 11 H 0.120 0.880 12 C 0.265 3.735 13 N -0.516 5.516 14 C 0.038 3.962 15 C -0.539 4.539 16 H 0.054 0.946 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.947 3.053 20 H -0.285 1.285 21 H -0.278 1.278 22 H -0.264 1.264 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.160 0.840 27 H 0.182 0.818 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.350 0.650 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.000 1.000 34 H 0.039 0.961 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 19.642 11.464 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.169 4.169 4 C -0.351 4.351 5 S 0.335 5.665 6 C -0.305 4.305 7 C 0.004 3.996 8 N -0.331 5.331 9 C -0.051 4.051 10 C -0.002 4.002 11 H 0.138 0.862 12 C -0.051 4.051 13 N -0.194 5.194 14 C -0.001 4.001 15 C -0.577 4.577 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.773 3.227 20 H -0.212 1.212 21 H -0.203 1.203 22 H -0.188 1.188 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.177 0.823 27 H 0.199 0.801 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.170 0.830 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.019 0.981 34 H 0.057 0.943 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.304 18.301 10.666 21.837 hybrid contribution -2.372 0.272 -0.592 2.459 sum 2.933 18.573 10.075 21.332 Atomic orbital electron populations 1.20582 0.88295 1.03402 1.03045 1.19210 0.98539 0.91481 1.02713 1.20325 0.92855 1.00006 1.03755 1.25884 1.00494 0.98644 1.10058 1.84551 1.07166 1.01805 1.72984 1.24265 0.95500 0.98942 1.11757 1.20283 0.99985 0.89490 0.89874 1.60458 1.55430 1.03486 1.13716 1.21894 0.99950 0.89767 0.93500 1.19195 0.84877 1.01322 0.94766 0.86200 1.29352 0.94264 0.90050 0.91469 1.80908 1.14639 1.11970 1.11871 1.18993 0.95453 0.89474 0.96167 1.21564 1.38231 1.04120 0.93797 0.92822 1.25696 0.95695 0.96577 1.00744 1.70027 1.41892 1.11269 1.33113 0.85718 0.77542 0.78546 0.80924 1.21166 1.20328 1.18794 0.90263 0.90230 0.91584 0.82278 0.80070 0.90716 0.91150 0.83043 0.91138 0.90723 0.98145 0.94310 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.28 9.60 71.24 0.68 -0.60 16 2 C -0.11 -1.95 5.80 -20.92 -0.12 -2.07 16 3 C -0.14 -2.35 9.98 21.22 0.21 -2.14 16 4 C -0.22 -3.81 11.23 66.72 0.75 -3.06 16 5 S 0.07 1.55 23.33 -56.49 -1.32 0.23 16 6 C -0.19 -4.01 6.02 24.59 0.15 -3.87 16 7 C 0.13 2.81 5.54 85.56 0.47 3.28 16 8 N -0.70 -17.09 6.19 -517.92 -3.21 -20.30 16 9 C 0.08 2.13 5.05 86.30 0.44 2.56 16 10 C 0.02 0.71 2.35 -12.60 -0.03 0.68 16 11 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 12 C 0.26 11.04 13.66 89.46 1.22 12.26 16 13 N -0.52 -23.84 18.53 19.98 0.37 -23.47 16 14 C 0.04 1.72 4.42 29.85 0.13 1.85 16 15 C -0.54 -28.37 8.60 25.60 0.22 -28.15 16 16 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 17 C 0.01 0.65 5.46 84.66 0.46 1.11 16 18 N -0.92 -52.73 13.29 21.45 0.28 -52.45 16 19 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 23 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 24 H 0.08 0.89 8.13 -2.39 -0.02 0.87 16 25 H 0.07 0.91 7.07 -2.39 -0.02 0.89 16 26 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 27 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 1.22 7.33 -2.39 -0.02 1.20 16 30 H 0.35 7.73 8.53 -89.69 -0.77 6.97 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 34 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 Total: -1.00 -64.73 319.97 3.07 -61.66 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 0.33 Total: 7.12 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 4.59 Total: -18.14 kcal Atomic # 7 Polarization: -93.66 SS G_CDS: -2.55 Total: -96.21 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -1.32 Total: 0.23 kcal Total: -64.73 3.07 -61.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309612243.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.365 kcal (2) G-P(sol) polarization free energy of solvation -64.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds