Wall clock time and date at job start Mon Mar 30 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38421 * 122.54168 * 2 1 4 4 C 1.33386 * 114.92201 * 180.27311 * 3 2 1 5 5 S 1.75882 * 109.59434 * 359.77441 * 4 3 2 6 6 C 1.33391 * 122.53739 * 179.83558 * 2 1 3 7 7 C 1.50695 * 125.20561 * 0.02562 * 6 2 1 8 8 N 1.46901 * 109.47379 * 89.71974 * 7 6 2 9 9 C 1.46895 * 111.00119 * 180.02562 * 8 7 6 10 10 C 1.52994 * 109.47270 * 179.97438 * 9 8 7 11 11 H 1.09009 * 109.47154 * 54.99975 * 10 9 8 12 12 C 1.47200 * 109.47451 * 295.00037 * 10 9 8 13 13 N 5.77470 * 63.46094 * 230.87359 * 2 1 3 14 14 C 1.52996 * 109.47347 * 174.99819 * 10 9 8 15 15 C 1.50702 * 109.47159 * 185.00014 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 H 1.09001 * 109.47194 * 270.16768 * 1 2 3 24 24 H 1.09000 * 109.47419 * 30.16743 * 1 2 3 25 25 H 1.09001 * 109.47295 * 150.16521 * 1 2 3 26 26 H 1.08008 * 122.53956 * 0.04724 * 3 2 1 27 27 H 1.08006 * 125.20267 * 179.75461 * 4 3 2 28 28 H 1.09002 * 109.47190 * 329.71778 * 7 6 2 29 29 H 1.08996 * 109.47247 * 209.71969 * 7 6 2 30 30 H 1.00903 * 110.99388 * 56.04541 * 8 7 6 31 31 H 1.08998 * 109.47324 * 59.99878 * 9 8 7 32 32 H 1.09002 * 109.47421 * 300.00055 * 9 8 7 33 33 H 1.09004 * 109.47066 * 65.00217 * 14 10 9 34 34 H 1.08994 * 109.47405 * 305.00047 * 14 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2515 1.1669 0.0000 4 6 3.5736 0.9900 -0.0058 5 16 3.9385 -0.7305 -0.0051 6 6 2.2244 -1.1245 0.0032 7 6 1.6536 -2.5192 0.0067 8 7 1.4624 -2.9735 -1.3772 9 6 0.9055 -4.3323 -1.4130 10 6 0.7203 -4.7695 -2.8674 11 1 1.6672 -4.6737 -3.3989 12 6 -0.2922 -3.9167 -3.5110 13 7 -1.0732 -3.2601 -4.0077 14 6 0.2586 -6.2276 -2.9069 15 6 0.1944 -6.6956 -4.3379 16 1 0.4570 -6.0207 -5.1391 17 6 -0.1937 -7.9874 -4.6240 18 7 -0.5132 -8.8094 -3.6483 19 14 -0.2659 -8.5698 -6.3974 20 1 1.0816 -8.4559 -7.0111 21 1 -0.7094 -9.9866 -6.4354 22 1 -1.2278 -7.7300 -7.1556 23 1 -0.3633 0.0030 1.0277 24 1 -0.3634 0.8885 -0.5164 25 1 -0.3634 -0.8915 -0.5113 26 1 1.7965 2.1464 0.0008 27 1 4.3077 1.7822 -0.0105 28 1 0.6945 -2.5180 0.5245 29 1 2.3418 -3.1922 0.5182 30 1 2.3257 -2.9223 -1.8970 31 1 -0.0589 -4.3433 -0.9051 32 1 1.5881 -5.0182 -0.9111 33 1 -0.7294 -6.3083 -2.4535 34 1 0.9640 -6.8472 -2.3533 35 1 -0.7866 -9.7181 -3.8497 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309612245.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:29 Heat of formation + Delta-G solvation = 41.041225 kcal Electronic energy + Delta-G solvation = -16663.649482 eV Core-core repulsion = 13980.675400 eV Total energy + Delta-G solvation = -2682.974082 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.69774 -37.22510 -35.21111 -33.58131 -32.01734 -30.69492 -28.63080 -26.37030 -24.36685 -22.73916 -22.26371 -21.70951 -18.59490 -17.47190 -16.82852 -16.41302 -15.45975 -15.03771 -14.69621 -14.44860 -14.16186 -13.64809 -13.42777 -12.98374 -12.59979 -12.57521 -12.26943 -12.04478 -11.97555 -11.83654 -11.61014 -11.52562 -11.21156 -11.04128 -10.77109 -10.68971 -10.55672 -10.24395 -9.57764 -9.26246 -8.78081 -8.46068 -8.39907 -8.32791 -6.10046 -4.13237 0.88354 1.54137 1.89639 2.59899 3.31181 3.35414 3.39291 3.75456 3.85213 4.30367 4.43528 4.71902 4.83017 4.92159 5.08637 5.28109 5.30914 5.41675 5.46263 5.55017 5.62377 5.66479 5.72820 5.95892 5.97480 5.99652 6.35595 6.40248 6.47782 6.48291 7.00855 7.39373 7.42388 7.52089 7.85065 8.22534 8.59510 8.91282 9.52248 11.00820 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.035073 B = 0.003608 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.136051 B = 7758.363928 C = 7977.955918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.089 4.089 3 C -0.130 4.130 4 C -0.214 4.214 5 S 0.086 5.914 6 C -0.174 4.174 7 C 0.131 3.869 8 N -0.687 5.687 9 C 0.066 3.934 10 C 0.010 3.990 11 H 0.099 0.901 12 C 0.255 3.745 13 N -0.478 5.478 14 C 0.032 3.968 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.137 0.863 27 H 0.161 0.839 28 H 0.091 0.909 29 H 0.042 0.958 30 H 0.343 0.657 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.026 0.974 34 H 0.037 0.963 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.688 15.473 11.273 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.102 4.102 3 C -0.161 4.161 4 C -0.350 4.350 5 S 0.351 5.649 6 C -0.291 4.291 7 C 0.000 4.000 8 N -0.319 5.319 9 C -0.064 4.064 10 C -0.012 4.012 11 H 0.117 0.883 12 C -0.062 4.062 13 N -0.155 5.155 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.202 1.202 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.155 0.845 27 H 0.179 0.821 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.161 0.839 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.208 15.730 10.493 20.614 hybrid contribution -0.142 -0.256 -0.588 0.657 sum 8.067 15.474 9.905 20.065 Atomic orbital electron populations 1.20548 0.89617 1.03572 1.01848 1.18857 0.97624 0.91373 1.02301 1.20087 0.92893 0.99336 1.03766 1.25507 0.99694 0.98875 1.10923 1.84247 1.06388 1.00743 1.73557 1.24233 0.95050 0.99021 1.10791 1.20335 1.00003 0.88676 0.90950 1.60550 1.33988 1.25435 1.11893 1.22102 1.00496 0.87358 0.96434 1.19206 0.94191 0.95618 0.92217 0.88323 1.28782 0.93531 0.91547 0.92329 1.80932 1.11499 1.12668 1.10372 1.19163 0.97679 0.85557 0.98259 1.21109 1.46269 0.97119 0.92042 0.92541 1.24950 0.94964 0.96759 0.97260 1.69929 1.45232 1.06419 1.31482 0.86650 0.78647 0.77685 0.85078 1.20053 1.21191 1.20200 0.91632 0.91780 0.90304 0.84499 0.82120 0.89102 0.94043 0.83903 0.90295 0.93096 0.95522 0.94445 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 9.60 36.00 0.35 -0.67 16 2 C -0.09 -1.00 5.80 -106.25 -0.62 -1.62 16 3 C -0.13 -1.31 9.98 -41.21 -0.41 -1.73 16 4 C -0.21 -2.03 11.23 29.04 0.33 -1.71 16 5 S 0.09 0.87 23.33 -107.50 -2.51 -1.63 16 6 C -0.17 -1.98 6.02 -36.00 -0.22 -2.19 16 7 C 0.13 1.47 5.54 -4.98 -0.03 1.44 16 8 N -0.69 -8.92 6.19 -115.07 -0.71 -9.64 16 9 C 0.07 0.94 5.05 -3.83 -0.02 0.92 16 10 C 0.01 0.18 2.35 -93.41 -0.22 -0.04 16 11 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 12 C 0.26 5.31 13.66 -20.80 -0.28 5.03 16 13 N -0.48 -10.87 18.53 42.11 0.78 -10.09 16 14 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 15 C -0.53 -14.00 8.60 -34.44 -0.30 -14.29 16 16 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 19 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 25 H 0.08 0.96 7.26 -51.93 -0.38 0.58 16 26 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 27 H 0.16 1.14 8.06 -52.48 -0.42 0.71 16 28 H 0.09 1.00 7.33 -51.93 -0.38 0.62 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.34 4.24 8.72 -39.29 -0.34 3.90 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 320.35 15.07 4.83 4.83 Total: -1.00 -30.15 320.35 -8.40 -38.55 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -4.86 Total: -0.94 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -1.64 Total: -12.62 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.80 Total: -44.45 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.51 Total: -1.63 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.15 -8.40 -38.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309612245.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.587 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds