Wall clock time and date at job start Mon Mar 30 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38421 * 122.54168 * 2 1 4 4 C 1.33386 * 114.92201 * 180.27311 * 3 2 1 5 5 S 1.75882 * 109.59434 * 359.77441 * 4 3 2 6 6 C 1.33391 * 122.53739 * 179.83558 * 2 1 3 7 7 C 1.50695 * 125.20561 * 0.02562 * 6 2 1 8 8 N 1.46901 * 109.47379 * 89.71974 * 7 6 2 9 9 C 1.46895 * 111.00119 * 180.02562 * 8 7 6 10 10 C 1.52994 * 109.47270 * 179.97438 * 9 8 7 11 11 H 1.09009 * 109.47154 * 54.99975 * 10 9 8 12 12 C 1.47200 * 109.47451 * 295.00037 * 10 9 8 13 13 N 5.77470 * 63.46094 * 230.87359 * 2 1 3 14 14 C 1.52996 * 109.47347 * 174.99819 * 10 9 8 15 15 C 1.50702 * 109.47159 * 185.00014 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 H 1.09001 * 109.47194 * 270.16768 * 1 2 3 24 24 H 1.09000 * 109.47419 * 30.16743 * 1 2 3 25 25 H 1.09001 * 109.47295 * 150.16521 * 1 2 3 26 26 H 1.08008 * 122.53956 * 0.04724 * 3 2 1 27 27 H 1.08006 * 125.20267 * 179.75461 * 4 3 2 28 28 H 1.09002 * 109.47190 * 329.71778 * 7 6 2 29 29 H 1.08996 * 109.47247 * 209.71969 * 7 6 2 30 30 H 1.00903 * 110.99388 * 56.04541 * 8 7 6 31 31 H 1.08998 * 109.47324 * 59.99878 * 9 8 7 32 32 H 1.09002 * 109.47421 * 300.00055 * 9 8 7 33 33 H 1.09004 * 109.47066 * 65.00217 * 14 10 9 34 34 H 1.08994 * 109.47405 * 305.00047 * 14 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2515 1.1669 0.0000 4 6 3.5736 0.9900 -0.0058 5 16 3.9385 -0.7305 -0.0051 6 6 2.2244 -1.1245 0.0032 7 6 1.6536 -2.5192 0.0067 8 7 1.4624 -2.9735 -1.3772 9 6 0.9055 -4.3323 -1.4130 10 6 0.7203 -4.7695 -2.8674 11 1 1.6672 -4.6737 -3.3989 12 6 -0.2922 -3.9167 -3.5110 13 7 -1.0732 -3.2601 -4.0077 14 6 0.2586 -6.2276 -2.9069 15 6 0.1944 -6.6956 -4.3379 16 1 0.4570 -6.0207 -5.1391 17 6 -0.1937 -7.9874 -4.6240 18 7 -0.5132 -8.8094 -3.6483 19 14 -0.2659 -8.5698 -6.3974 20 1 1.0816 -8.4559 -7.0111 21 1 -0.7094 -9.9866 -6.4354 22 1 -1.2278 -7.7300 -7.1556 23 1 -0.3633 0.0030 1.0277 24 1 -0.3634 0.8885 -0.5164 25 1 -0.3634 -0.8915 -0.5113 26 1 1.7965 2.1464 0.0008 27 1 4.3077 1.7822 -0.0105 28 1 0.6945 -2.5180 0.5245 29 1 2.3418 -3.1922 0.5182 30 1 2.3257 -2.9223 -1.8970 31 1 -0.0589 -4.3433 -0.9051 32 1 1.5881 -5.0182 -0.9111 33 1 -0.7294 -6.3083 -2.4535 34 1 0.9640 -6.8472 -2.3533 35 1 -0.7866 -9.7181 -3.8497 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309612245.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:28 Heat of formation + Delta-G solvation = 23.568835 kcal Electronic energy + Delta-G solvation = -16664.407141 eV Core-core repulsion = 13980.675400 eV Total energy + Delta-G solvation = -2683.731741 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.54741 -38.60096 -36.56858 -35.39955 -33.58327 -31.71723 -29.74558 -27.89716 -25.48025 -23.98398 -23.46932 -23.08080 -19.46640 -18.62583 -18.33600 -17.96185 -16.66128 -16.37735 -15.86953 -15.64454 -15.43964 -14.80828 -14.45946 -14.24740 -14.21133 -13.74536 -13.67697 -13.34742 -13.22030 -13.02373 -12.84723 -12.82050 -12.50513 -12.45899 -12.39477 -12.30037 -11.90106 -11.56035 -11.39979 -11.15683 -10.54201 -9.61049 -9.29863 -9.18053 -8.18850 -6.26921 0.09885 0.77540 1.12828 1.41540 1.43378 1.50275 1.81062 2.09589 2.16398 2.42274 3.16525 3.26263 3.39760 3.89631 4.10302 4.16745 4.29782 4.40337 4.56788 4.65205 4.72560 4.78155 4.79681 4.84738 4.85467 5.01361 5.16901 5.21267 5.47748 5.59812 5.63076 5.69008 5.79757 5.96460 6.21836 6.42380 6.84135 6.95019 7.41578 8.91830 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.035073 B = 0.003608 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.136051 B = 7758.363928 C = 7977.955918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.100 4.100 3 C -0.144 4.144 4 C -0.210 4.210 5 S 0.088 5.912 6 C -0.193 4.193 7 C 0.135 3.865 8 N -0.694 5.694 9 C 0.079 3.921 10 C 0.020 3.980 11 H 0.118 0.882 12 C 0.266 3.734 13 N -0.514 5.514 14 C 0.038 3.962 15 C -0.540 4.540 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.947 3.053 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.154 0.846 27 H 0.186 0.814 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.347 0.653 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.002 0.998 34 H 0.037 0.963 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.949 16.394 11.453 22.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.174 4.174 4 C -0.345 4.345 5 S 0.353 5.647 6 C -0.310 4.310 7 C 0.005 3.995 8 N -0.327 5.327 9 C -0.051 4.051 10 C -0.002 4.002 11 H 0.136 0.864 12 C -0.051 4.051 13 N -0.192 5.192 14 C -0.001 4.001 15 C -0.579 4.579 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.773 3.227 20 H -0.187 1.187 21 H -0.207 1.207 22 H -0.207 1.207 23 H 0.096 0.904 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.172 0.828 27 H 0.203 0.797 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.166 0.834 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.020 0.980 34 H 0.055 0.945 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.484 16.662 10.675 21.944 hybrid contribution -0.517 -0.490 -0.620 0.945 sum 8.967 16.172 10.055 21.048 Atomic orbital electron populations 1.20514 0.89498 1.02795 1.02461 1.19109 0.98015 0.91983 1.02204 1.20299 0.93200 0.99758 1.04171 1.25865 1.00074 0.99014 1.09578 1.84207 1.05529 1.01520 1.73435 1.24294 0.95861 0.98989 1.11843 1.20304 1.00376 0.89034 0.89821 1.60470 1.34471 1.24385 1.13341 1.21895 1.01061 0.88655 0.93514 1.19174 0.93815 0.92293 0.94895 0.86433 1.29306 0.93220 0.91081 0.91459 1.80929 1.12557 1.13942 1.11742 1.18985 0.96439 0.88509 0.96130 1.21539 1.45437 0.97133 0.93751 0.92830 1.25699 0.94992 0.97215 1.00782 1.70023 1.46371 1.06721 1.33189 0.85768 0.78936 0.77168 0.80822 1.18749 1.20726 1.20737 0.90360 0.91229 0.92293 0.82817 0.79724 0.89150 0.92889 0.83407 0.90709 0.91168 0.97989 0.94516 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.88 9.60 71.23 0.68 -1.20 16 2 C -0.10 -2.13 5.80 -20.92 -0.12 -2.25 16 3 C -0.14 -2.63 9.98 21.21 0.21 -2.42 16 4 C -0.21 -3.50 11.23 66.72 0.75 -2.75 16 5 S 0.09 1.64 23.33 -56.49 -1.32 0.32 16 6 C -0.19 -4.12 6.02 24.59 0.15 -3.97 16 7 C 0.13 2.84 5.54 85.56 0.47 3.31 16 8 N -0.69 -17.04 6.19 -517.96 -3.21 -20.24 16 9 C 0.08 2.13 5.05 86.30 0.44 2.57 16 10 C 0.02 0.71 2.35 -12.60 -0.03 0.68 16 11 H 0.12 3.73 8.14 -2.38 -0.02 3.72 16 12 C 0.27 10.94 13.66 89.46 1.22 12.16 16 13 N -0.51 -23.35 18.53 19.99 0.37 -22.98 16 14 C 0.04 1.74 4.42 29.85 0.13 1.87 16 15 C -0.54 -28.53 8.60 25.60 0.22 -28.31 16 16 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 17 C 0.01 0.66 5.46 84.66 0.46 1.13 16 18 N -0.92 -52.84 13.29 21.45 0.28 -52.55 16 19 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.07 1.28 8.13 -2.39 -0.02 1.26 16 25 H 0.06 1.41 7.26 -2.39 -0.02 1.40 16 26 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 27 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 28 H 0.09 1.89 7.33 -2.39 -0.02 1.87 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.35 7.98 8.72 -89.69 -0.78 7.19 16 31 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 Total: -1.00 -63.45 320.35 3.05 -60.39 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.31 Total: 8.84 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 4.59 Total: -19.17 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -2.55 Total: -95.77 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.32 Total: 0.32 kcal Total: -63.45 3.05 -60.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309612245.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.960 kcal (2) G-P(sol) polarization free energy of solvation -63.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds