Wall clock time and date at job start Mon Mar 30 2020 06:32:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81394 * 1
3 3 C 1.81401 * 103.00131 * 2 1
4 4 H 1.08995 * 112.91025 * 46.74523 * 3 2 1
5 5 C 1.53780 * 113.61374 * 275.49359 * 3 2 1
6 6 C 1.53776 * 87.17481 * 219.97672 * 5 3 2
7 7 C 1.53780 * 113.61577 * 177.99773 * 3 2 1
8 8 H 1.08997 * 113.61630 * 25.34443 * 7 3 2
9 9 N 1.46504 * 113.61264 * 254.52903 * 7 3 2
10 10 C 1.38823 * 119.99864 * 155.00322 * 9 7 3
11 11 C 1.39803 * 119.58429 * 359.72239 * 10 9 7
12 12 C 1.38596 * 119.48512 * 179.77419 * 11 10 9
13 13 C 1.38383 * 118.68361 * 0.49413 * 12 11 10
14 14 C 1.40554 * 119.14861 * 359.74973 * 13 12 11
15 15 C 1.41327 * 119.78303 * 180.02562 * 14 13 12
16 16 H 1.07996 * 119.99870 * 353.66539 * 15 14 13
17 17 C 1.40015 * 119.99848 * 173.66354 * 15 14 13
18 18 N 1.30749 * 120.00329 * 6.28963 * 17 15 14
19 19 Si 1.86803 * 119.99807 * 186.29178 * 17 15 14
20 20 H 1.48499 * 109.47364 * 94.98880 * 19 17 15
21 21 H 1.48506 * 109.47032 * 214.98610 * 19 17 15
22 22 H 1.48496 * 109.47253 * 334.98376 * 19 17 15
23 23 N 1.31959 * 119.58323 * 179.97438 * 10 9 7
24 24 H 1.09000 * 109.47022 * 60.00469 * 1 2 3
25 25 H 1.08997 * 109.47061 * 179.97438 * 1 2 3
26 26 H 1.08999 * 109.47107 * 300.00141 * 1 2 3
27 27 H 1.09006 * 113.61697 * 334.56420 * 5 3 2
28 28 H 1.09007 * 113.61635 * 105.38525 * 5 3 2
29 29 H 1.09002 * 113.62069 * 140.02684 * 6 5 3
30 30 H 1.09001 * 113.61030 * 270.92548 * 6 5 3
31 31 H 0.97001 * 119.99750 * 334.99646 * 9 7 3
32 32 H 1.08000 * 120.25345 * 0.02562 * 11 10 9
33 33 H 1.07998 * 120.65695 * 180.24808 * 12 11 10
34 34 H 1.07998 * 120.42871 * 179.77319 * 13 12 11
35 35 H 0.97000 * 120.00122 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8139 0.0000 0.0000
3 6 2.2220 1.7675 0.0000
4 1 1.6472 2.3357 0.7312
5 6 2.2292 2.3981 -1.4026
6 6 3.4725 3.1866 -0.9586
7 6 3.7327 2.0510 0.0492
8 1 4.3422 1.2410 -0.3514
9 7 4.1992 2.5212 1.3559
10 6 5.5223 2.3302 1.7305
11 6 6.4005 1.6828 0.8564
12 6 7.7220 1.4973 1.2305
13 6 8.1313 1.9531 2.4713
14 6 7.1995 2.5919 3.3075
15 6 7.6031 3.0632 4.5773
16 1 8.5944 2.8429 4.9449
17 6 6.7179 3.8157 5.3586
18 7 5.4800 3.9788 4.9706
19 14 7.3054 4.5868 6.9554
20 1 7.7190 5.9908 6.7043
21 1 6.2030 4.5660 7.9501
22 1 8.4611 3.8167 7.4811
23 7 5.9338 2.7575 2.9092
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0276 -0.0005
26 1 -0.3633 0.5138 0.8900
27 1 2.4277 1.6836 -2.2016
28 1 1.3618 3.0271 -1.6030
29 1 4.2362 3.2696 -1.7319
30 1 3.2388 4.1421 -0.4890
31 1 3.5837 2.9662 1.9593
32 1 6.0527 1.3335 -0.1046
33 1 8.4176 1.0032 0.5684
34 1 9.1537 1.8202 2.7930
35 1 4.8666 4.4998 5.5120
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000309927321.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:32:56
Heat of formation + Delta-G solvation = 59.463388 kcal
Electronic energy + Delta-G solvation = -17274.922908 eV
Core-core repulsion = 14592.747672 eV
Total energy + Delta-G solvation = -2682.175237 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 264.099 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.12269 -37.72792 -33.96102 -32.73896 -30.31350 -29.03763 -28.61105 -25.75487
-25.32752 -24.36127 -21.54874 -20.55859 -19.55073 -17.45616 -16.94845 -15.94247
-15.61283 -14.77972 -14.54257 -14.43859 -13.76038 -13.54821 -13.39788 -13.09819
-12.98286 -12.69747 -12.45284 -12.13569 -11.79337 -11.30265 -11.20713 -10.99869
-10.95656 -10.66606 -10.40536 -10.28753 -9.89826 -9.79521 -9.44594 -8.86278
-7.89901 -7.62015 -7.48853 -6.51183 -6.32032 -4.44766 1.73359 2.60324
2.88648 3.12525 3.16280 3.25802 3.30948 4.00202 4.19259 4.43783
4.57716 4.82499 4.95887 5.02166 5.05450 5.08613 5.56627 5.59568
5.66088 5.72927 5.96603 6.06575 6.10031 6.19461 6.31991 6.65408
6.86672 6.92065 6.96626 7.26795 7.61671 7.82963 7.94506 8.18355
8.37514 8.68293 8.82371 9.13606 10.26025 10.42063
Molecular weight = 264.10amu
Principal moments of inertia in cm(-1)
A = 0.024399 B = 0.004882 C = 0.004490
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1147.301087 B = 5733.534286 C = 6235.016832
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 S -0.251 6.251
3 C -0.090 4.090
4 H 0.105 0.895
5 C -0.127 4.127
6 C -0.153 4.153
7 C 0.179 3.821
8 H 0.112 0.888
9 N -0.723 5.723
10 C 0.412 3.588
11 C -0.366 4.366
12 C -0.031 4.031
13 C -0.316 4.316
14 C 0.293 3.707
15 C -0.436 4.436
16 H 0.083 0.917
17 C 0.072 3.928
18 N -0.717 5.717
19 Si 0.905 3.095
20 H -0.271 1.271
21 H -0.277 1.277
22 H -0.262 1.262
23 N -0.530 5.530
24 H 0.073 0.927
25 H 0.096 0.904
26 H 0.074 0.926
27 H 0.093 0.907
28 H 0.071 0.929
29 H 0.076 0.924
30 H 0.086 0.914
31 H 0.396 0.604
32 H 0.090 0.910
33 H 0.093 0.907
34 H 0.095 0.905
35 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.126 -1.881 -8.865 12.861
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.292 4.292
2 S -0.022 6.022
3 C -0.221 4.221
4 H 0.123 0.877
5 C -0.167 4.167
6 C -0.195 4.195
7 C 0.069 3.931
8 H 0.130 0.870
9 N -0.357 5.357
10 C 0.172 3.828
11 C -0.392 4.392
12 C -0.056 4.056
13 C -0.339 4.339
14 C 0.166 3.834
15 C -0.468 4.468
16 H 0.101 0.899
17 C -0.153 4.153
18 N -0.339 5.339
19 Si 0.729 3.271
20 H -0.196 1.196
21 H -0.203 1.203
22 H -0.185 1.185
23 N -0.252 5.252
24 H 0.092 0.908
25 H 0.115 0.885
26 H 0.093 0.907
27 H 0.111 0.889
28 H 0.090 0.910
29 H 0.095 0.905
30 H 0.104 0.896
31 H 0.231 0.769
32 H 0.109 0.891
33 H 0.111 0.889
34 H 0.113 0.887
35 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -9.199 -2.383 -8.350 12.651
hybrid contribution -0.380 1.104 0.399 1.234
sum -9.579 -1.279 -7.951 12.515
Atomic orbital electron populations
1.23329 0.95263 1.06038 1.04607 1.87020 1.06249 1.11312 1.97623
1.25409 1.01997 0.93595 1.01050 0.87656 1.23078 0.99103 0.99442
0.95079 1.23531 0.97498 0.98837 0.99604 1.22004 0.90004 0.96203
0.84881 0.87011 1.44096 1.08726 1.65790 1.17102 1.18523 0.84199
0.89636 0.90440 1.20622 0.95537 1.20606 1.02396 1.20592 0.94314
0.95554 0.95108 1.21535 0.99873 1.14889 0.97579 1.18200 0.85867
0.87174 0.92190 1.19585 0.99833 1.27980 0.99372 0.89864 1.26040
0.94440 0.95747 0.99050 1.70158 1.03445 1.26147 1.34141 0.86368
0.79488 0.79959 0.81275 1.19594 1.20269 1.18542 1.68207 1.17262
1.26840 1.12845 0.90773 0.88495 0.90722 0.88862 0.90983 0.90526
0.89557 0.76899 0.89147 0.88909 0.88695 0.92009
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.20 10.76 101.05 1.09 -0.11 16
2 S -0.25 -3.42 22.17 -107.50 -2.38 -5.80 16
3 C -0.09 -1.19 4.03 -25.92 -0.10 -1.29 16
4 H 0.11 1.37 8.12 -51.93 -0.42 0.94 16
5 C -0.13 -1.37 7.66 -25.92 -0.20 -1.57 16
6 C -0.15 -2.00 7.90 -25.78 -0.20 -2.20 16
7 C 0.18 2.84 3.62 -66.97 -0.24 2.60 16
8 H 0.11 1.90 6.03 -51.93 -0.31 1.59 16
9 N -0.72 -14.57 5.52 -52.97 -0.29 -14.86 16
10 C 0.41 10.16 7.65 -155.32 -1.19 8.97 16
11 C -0.37 -8.57 9.30 -38.86 -0.36 -8.94 16
12 C -0.03 -0.74 10.15 -39.40 -0.40 -1.14 16
13 C -0.32 -8.12 9.83 -38.66 -0.38 -8.50 16
14 C 0.29 8.26 6.54 -85.00 -0.56 7.71 16
15 C -0.44 -11.96 9.13 -37.74 -0.34 -12.31 16
16 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16
17 C 0.07 1.87 5.49 -17.35 -0.10 1.77 16
18 N -0.72 -19.25 11.49 55.55 0.64 -18.61 16
19 Si 0.90 18.93 29.56 -169.99 -5.03 13.90 16
20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16
21 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16
22 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16
23 N -0.53 -14.82 7.92 -10.32 -0.08 -14.90 16
24 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16
25 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16
26 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16
27 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16
28 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16
29 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16
30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16
31 H 0.40 7.98 8.85 -40.82 -0.36 7.62 16
32 H 0.09 1.89 6.01 -52.49 -0.32 1.57 16
33 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16
34 H 0.09 2.27 8.06 -52.49 -0.42 1.85 16
35 H 0.27 6.54 8.29 -40.82 -0.34 6.21 16
LS Contribution 308.26 15.07 4.65 4.65
Total: -1.00 -29.93 308.26 -10.25 -40.18
By element:
Atomic # 1 Polarization: 15.21 SS G_CDS: -4.76 Total: 10.45 kcal
Atomic # 6 Polarization: -12.02 SS G_CDS: -2.99 Total: -15.01 kcal
Atomic # 7 Polarization: -48.64 SS G_CDS: 0.26 Total: -48.38 kcal
Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal
Atomic # 16 Polarization: -3.42 SS G_CDS: -2.38 Total: -5.80 kcal
Total LS contribution 4.65 Total: 4.65 kcal
Total: -29.93 -10.25 -40.18 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000309927321.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.646 kcal
(2) G-P(sol) polarization free energy of solvation -29.934 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.711 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.463 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds