Wall clock time and date at job start Mon Mar 30 2020 06:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.81397 * 103.00082 * 2 1 4 4 H 1.08998 * 112.90857 * 316.25234 * 3 2 1 5 5 C 1.53779 * 113.61597 * 87.50062 * 3 2 1 6 6 C 1.54051 * 87.07843 * 139.97897 * 5 3 2 7 7 C 1.53777 * 113.61835 * 185.00078 * 3 2 1 8 8 H 1.08999 * 113.61673 * 105.38186 * 7 3 2 9 9 N 1.46505 * 113.61329 * 334.56740 * 7 3 2 10 10 C 1.38816 * 119.99918 * 156.52461 * 9 7 3 11 11 C 1.39799 * 119.58611 * 359.97438 * 10 9 7 12 12 C 1.38604 * 119.48977 * 180.02562 * 11 10 9 13 13 C 1.38390 * 118.67975 * 359.97438 * 12 11 10 14 14 C 1.40555 * 119.14969 * 0.02562 * 13 12 11 15 15 C 1.41317 * 119.78286 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99750 * 359.97438 * 15 14 13 17 17 C 1.40019 * 120.00088 * 180.02562 * 15 14 13 18 18 N 1.30745 * 119.99766 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00021 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47000 * 89.99886 * 19 17 15 21 21 H 1.48492 * 109.46748 * 209.99654 * 19 17 15 22 22 H 1.48500 * 109.46961 * 329.99854 * 19 17 15 23 23 N 1.31957 * 119.58583 * 180.02562 * 10 9 7 24 24 H 1.09002 * 109.47251 * 60.00216 * 1 2 3 25 25 H 1.09010 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47365 * 299.99573 * 1 2 3 27 27 H 1.09000 * 113.61831 * 254.53176 * 5 3 2 28 28 H 1.09002 * 113.61340 * 25.43397 * 5 3 2 29 29 H 1.09003 * 113.69740 * 220.05298 * 6 5 3 30 30 H 1.09000 * 113.61330 * 89.07658 * 6 5 3 31 31 H 0.96994 * 119.99571 * 336.53241 * 9 7 3 32 32 H 1.07998 * 120.25361 * 359.97438 * 11 10 9 33 33 H 1.08000 * 120.65425 * 180.02562 * 12 11 10 34 34 H 1.08000 * 120.42375 * 180.27377 * 13 12 11 35 35 H 0.97006 * 119.99818 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6107 2.3440 -0.6943 5 6 2.3007 2.3815 1.4077 6 6 3.5227 3.1751 0.9074 7 6 3.7282 2.0520 -0.1228 8 1 4.0257 2.4120 -1.1077 9 7 4.5735 0.9582 0.3623 10 6 5.8755 0.8290 -0.1017 11 6 6.3710 1.7472 -1.0321 12 6 7.6710 1.6160 -1.4944 13 6 8.4438 0.5723 -1.0162 14 6 7.8885 -0.3183 -0.0813 15 6 8.6655 -1.3890 0.4155 16 1 9.6824 -1.5212 0.0763 17 6 8.1168 -2.2793 1.3465 18 7 6.8856 -2.1196 1.7567 19 14 9.1437 -3.6951 2.0027 20 1 9.8695 -3.2568 3.2218 21 1 8.2553 -4.8365 2.3390 22 1 10.1224 -4.1175 0.9688 23 7 6.6296 -0.1596 0.3403 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.4455 3.0090 1.6588 28 1 2.5393 1.6578 2.1870 29 1 4.3269 3.2486 1.6395 30 1 3.2664 4.1358 0.4608 31 1 4.2234 0.3243 1.0075 32 1 5.7453 2.5521 -1.3886 33 1 8.0731 2.3149 -2.2130 34 1 9.4619 0.4462 -1.3540 35 1 6.5056 -2.7361 2.4020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309927323.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:58 Heat of formation + Delta-G solvation = 63.606617 kcal Electronic energy + Delta-G solvation = -17464.845073 eV Core-core repulsion = 14782.849500 eV Total energy + Delta-G solvation = -2681.995573 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.20050 -37.68125 -33.84876 -32.58652 -30.27615 -28.98330 -28.41368 -25.72992 -25.26840 -24.68835 -21.42682 -20.89129 -19.00063 -17.33796 -16.73571 -16.36486 -15.14484 -14.74037 -14.47764 -14.35823 -13.74758 -13.62448 -13.45604 -13.14484 -13.02868 -12.70473 -12.40499 -12.11557 -11.82171 -11.23630 -11.07618 -10.93998 -10.73797 -10.60459 -10.38542 -10.10460 -9.87157 -9.65557 -9.42694 -8.84059 -7.86933 -7.51029 -7.42763 -6.48229 -6.26506 -4.41773 1.80869 2.71433 2.92200 3.15301 3.18550 3.28530 3.33897 4.03144 4.10390 4.53302 4.63532 4.86064 5.04412 5.10022 5.11220 5.15714 5.51100 5.66230 5.71943 5.83431 6.06261 6.13044 6.16445 6.21029 6.31689 6.66241 6.90192 6.94437 6.99388 7.30742 7.64625 7.85842 7.96961 8.22084 8.41212 8.73853 8.85774 9.17197 10.30288 10.46154 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.020226 B = 0.005897 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.042710 B = 4747.220775 C = 5660.975459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.220 6.220 3 C -0.101 4.101 4 H 0.108 0.892 5 C -0.125 4.125 6 C -0.160 4.160 7 C 0.178 3.822 8 H 0.096 0.904 9 N -0.712 5.712 10 C 0.414 3.586 11 C -0.368 4.368 12 C -0.032 4.032 13 C -0.317 4.317 14 C 0.292 3.708 15 C -0.434 4.434 16 H 0.082 0.918 17 C 0.071 3.929 18 N -0.713 5.713 19 Si 0.904 3.096 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.262 1.262 23 N -0.529 5.529 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.401 0.599 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.974 6.077 -0.505 12.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.008 5.992 3 C -0.232 4.232 4 H 0.126 0.874 5 C -0.165 4.165 6 C -0.201 4.201 7 C 0.068 3.932 8 H 0.114 0.886 9 N -0.348 5.348 10 C 0.175 3.825 11 C -0.394 4.394 12 C -0.056 4.056 13 C -0.340 4.340 14 C 0.166 3.834 15 C -0.466 4.466 16 H 0.101 0.899 17 C -0.154 4.154 18 N -0.334 5.334 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.186 1.186 23 N -0.250 5.250 24 H 0.090 0.910 25 H 0.115 0.885 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.238 0.762 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.819 4.605 0.101 11.759 hybrid contribution -0.379 0.844 -0.150 0.938 sum -11.198 5.449 -0.048 12.453 Atomic orbital electron populations 1.23399 0.96631 1.06012 1.04243 1.87512 1.04458 1.09706 1.97482 1.25404 1.01532 0.94843 1.01374 0.87430 1.23249 0.98599 0.99392 0.95234 1.23533 0.98437 0.97764 1.00371 1.21316 0.85909 0.87993 0.98005 0.88624 1.43823 1.10391 1.30910 1.49705 1.18472 0.84976 0.90327 0.88748 1.20623 0.98563 1.07394 1.12817 1.20584 0.93387 0.95598 0.96040 1.21528 1.00455 1.02494 1.09535 1.18191 0.87354 0.90567 0.87315 1.19573 0.99190 1.07654 1.20219 0.89938 1.26047 0.94945 0.98549 0.95889 1.70155 1.12286 1.30911 1.20055 0.86394 0.80430 0.80533 0.79803 1.19553 1.20262 1.18631 1.68196 1.06265 1.20362 1.30145 0.91046 0.88504 0.90933 0.91518 0.88901 0.90120 0.89755 0.76171 0.89131 0.89004 0.88769 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 10.76 101.05 1.09 -0.31 16 2 S -0.22 -3.30 20.67 -107.50 -2.22 -5.52 16 3 C -0.10 -1.33 4.23 -25.92 -0.11 -1.44 16 4 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 5 C -0.12 -1.51 7.56 -25.78 -0.19 -1.71 16 6 C -0.16 -2.10 7.90 -25.78 -0.20 -2.31 16 7 C 0.18 2.83 3.94 -67.12 -0.26 2.57 16 8 H 0.10 1.54 6.15 -51.93 -0.32 1.22 16 9 N -0.71 -14.68 4.90 -53.12 -0.26 -14.94 16 10 C 0.41 10.31 7.65 -155.33 -1.19 9.12 16 11 C -0.37 -8.59 9.30 -38.86 -0.36 -8.95 16 12 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 13 C -0.32 -8.18 9.83 -38.65 -0.38 -8.56 16 14 C 0.29 8.31 6.55 -85.00 -0.56 7.75 16 15 C -0.43 -12.00 9.14 -37.74 -0.34 -12.34 16 16 H 0.08 2.14 7.85 -52.49 -0.41 1.72 16 17 C 0.07 1.86 5.50 -17.35 -0.10 1.76 16 18 N -0.71 -19.39 11.46 55.55 0.64 -18.75 16 19 Si 0.90 19.11 29.56 -169.99 -5.02 14.09 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 22 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 23 N -0.53 -14.92 7.89 -10.33 -0.08 -15.00 16 24 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 25 H 0.10 0.94 8.14 -51.92 -0.42 0.51 16 26 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 1.26 8.10 -51.93 -0.42 0.84 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.40 8.64 7.80 -40.82 -0.32 8.32 16 32 H 0.09 1.86 6.04 -52.49 -0.32 1.54 16 33 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 35 H 0.27 6.69 8.29 -40.82 -0.34 6.35 16 LS Contribution 305.62 15.07 4.61 4.61 Total: -1.00 -30.10 305.62 -10.08 -40.18 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -4.73 Total: 10.90 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -3.01 Total: -15.56 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.29 Total: -48.69 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -2.22 Total: -5.52 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.10 -10.08 -40.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309927323.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.788 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds