Wall clock time and date at job start Mon Mar 30 2020 06:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81399 * 102.99845 * 2 1 4 4 H 1.09003 * 112.85403 * 43.79886 * 3 2 1 5 5 C 1.53788 * 113.61440 * 272.49896 * 3 2 1 6 6 C 1.54054 * 87.07660 * 220.02149 * 5 3 2 7 7 C 1.53783 * 113.61585 * 174.99875 * 3 2 1 8 8 H 1.08998 * 113.61231 * 254.61029 * 7 3 2 9 9 N 1.46503 * 113.61314 * 25.43516 * 7 3 2 10 10 C 1.38820 * 119.99509 * 203.47212 * 9 7 3 11 11 C 1.39793 * 119.58977 * 359.97438 * 10 9 7 12 12 C 1.38594 * 119.49643 * 180.02562 * 11 10 9 13 13 C 1.38397 * 118.67415 * 359.72175 * 12 11 10 14 14 C 1.40551 * 119.15187 * 0.53782 * 13 12 11 15 15 C 1.41312 * 119.78687 * 179.72534 * 14 13 12 16 16 H 1.08009 * 119.99836 * 353.14048 * 15 14 13 17 17 C 1.40024 * 120.00312 * 173.40641 * 15 14 13 18 18 N 1.30749 * 119.99699 * 6.29382 * 17 15 14 19 19 Si 1.86795 * 120.00199 * 186.29182 * 17 15 14 20 20 H 1.48491 * 109.47332 * 94.98748 * 19 17 15 21 21 H 1.48498 * 109.47141 * 214.99075 * 19 17 15 22 22 H 1.48504 * 109.46964 * 334.98670 * 19 17 15 23 23 N 1.31956 * 119.58091 * 179.97438 * 10 9 7 24 24 H 1.08995 * 109.47153 * 300.00197 * 1 2 3 25 25 H 1.09003 * 109.47227 * 60.00412 * 1 2 3 26 26 H 1.09001 * 109.46512 * 179.97438 * 1 2 3 27 27 H 1.09000 * 113.60794 * 334.56104 * 5 3 2 28 28 H 1.08994 * 113.61460 * 105.38358 * 5 3 2 29 29 H 1.09001 * 113.61141 * 270.92372 * 6 5 3 30 30 H 1.08993 * 113.69496 * 139.94216 * 6 5 3 31 31 H 0.96997 * 120.00022 * 23.46554 * 9 7 3 32 32 H 1.08004 * 120.25337 * 359.97438 * 11 10 9 33 33 H 1.07998 * 120.66225 * 180.02562 * 12 11 10 34 34 H 1.08000 * 120.42280 * 180.28922 * 13 12 11 35 35 H 0.97000 * 119.99350 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6108 2.3431 0.6952 5 6 2.3007 2.3816 -1.4078 6 6 3.5227 3.1751 -0.9075 7 6 3.7283 2.0521 0.1228 8 1 4.0257 2.4121 1.1077 9 7 4.5736 0.9583 -0.3623 10 6 5.8756 0.8292 0.1017 11 6 6.3714 1.7480 1.0313 12 6 7.6718 1.6176 1.4928 13 6 8.4425 0.5701 1.0193 14 6 7.8889 -0.3178 0.0810 15 6 8.6658 -1.3886 -0.4157 16 1 9.7131 -1.4594 -0.1611 17 6 8.0794 -2.3546 -1.2425 18 7 6.8482 -2.2016 -1.6552 19 14 9.0560 -3.8620 -1.7558 20 1 8.7573 -4.9841 -0.8304 21 1 8.6798 -4.2479 -3.1395 22 1 10.5075 -3.5520 -1.7057 23 7 6.6296 -0.1594 -0.3404 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 2.5395 1.6578 -2.1870 28 1 1.4449 3.0078 -1.6594 29 1 3.2664 4.1358 -0.4608 30 1 4.3269 3.2486 -1.6395 31 1 4.2235 0.3243 -1.0075 32 1 5.7462 2.5538 1.3865 33 1 8.0739 2.3164 2.2112 34 1 9.4578 0.4391 1.3635 35 1 6.4419 -2.8710 -2.2276 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309927327.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:01 Heat of formation + Delta-G solvation = 46.556386 kcal Electronic energy + Delta-G solvation = -17465.139720 eV Core-core repulsion = 14782.404794 eV Total energy + Delta-G solvation = -2682.734926 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61522 -39.36802 -35.69746 -34.32641 -32.21676 -30.40798 -29.68496 -27.30667 -26.68862 -25.93934 -23.33086 -22.62441 -20.35240 -19.13151 -18.35823 -17.66217 -16.74360 -16.49089 -15.88848 -15.79278 -15.32930 -14.93002 -14.64715 -14.43945 -14.41230 -14.01331 -13.87335 -13.58658 -13.26344 -12.92568 -12.72032 -12.57409 -12.29068 -12.11951 -11.84124 -11.68878 -11.29833 -11.19785 -10.73929 -10.55950 -9.82650 -9.41782 -8.64628 -8.27907 -8.21637 -6.46174 0.78402 1.07122 1.36455 1.41039 1.55536 1.58234 1.73926 2.25650 2.62479 2.92962 3.39514 3.59214 3.86163 4.03793 4.13021 4.36143 4.37032 4.38109 4.45793 4.60560 4.80520 4.87856 4.91226 4.97741 5.01484 5.03360 5.08435 5.10912 5.31303 5.42694 5.73828 5.98307 6.10354 6.23992 6.58604 6.84692 6.95612 7.23106 8.36483 8.53019 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.020131 B = 0.005930 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.540135 B = 4720.557063 C = 5664.970347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.314 6.314 3 C -0.075 4.075 4 H 0.139 0.861 5 C -0.115 4.115 6 C -0.147 4.147 7 C 0.154 3.846 8 H 0.095 0.905 9 N -0.709 5.709 10 C 0.398 3.602 11 C -0.366 4.366 12 C -0.029 4.029 13 C -0.345 4.345 14 C 0.259 3.741 15 C -0.473 4.473 16 H 0.086 0.914 17 C 0.025 3.975 18 N -0.751 5.751 19 Si 0.986 3.014 20 H -0.266 1.266 21 H -0.268 1.268 22 H -0.254 1.254 23 N -0.566 5.566 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.058 0.942 31 H 0.393 0.607 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.522 7.383 0.881 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.086 6.086 3 C -0.205 4.205 4 H 0.157 0.843 5 C -0.154 4.154 6 C -0.188 4.188 7 C 0.045 3.955 8 H 0.113 0.887 9 N -0.343 5.343 10 C 0.157 3.843 11 C -0.391 4.391 12 C -0.054 4.054 13 C -0.368 4.368 14 C 0.132 3.868 15 C -0.505 4.505 16 H 0.104 0.896 17 C -0.197 4.197 18 N -0.373 5.373 19 Si 0.806 3.194 20 H -0.191 1.191 21 H -0.193 1.193 22 H -0.178 1.178 23 N -0.289 5.289 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.120 0.880 27 H 0.090 0.910 28 H 0.119 0.881 29 H 0.137 0.863 30 H 0.077 0.923 31 H 0.229 0.771 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.120 0.880 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.408 5.961 0.288 13.769 hybrid contribution -0.081 0.504 0.199 0.548 sum -12.489 6.464 0.487 14.072 Atomic orbital electron populations 1.23387 0.91641 1.06938 1.05852 1.87894 1.10091 1.12909 1.97718 1.25366 0.99397 0.93083 1.02640 0.84329 1.23158 0.99289 0.98892 0.94095 1.23497 0.98103 0.98358 0.98853 1.21736 0.87237 0.87886 0.98651 0.88703 1.43962 1.09351 1.31879 1.49066 1.18941 0.86264 0.90097 0.89001 1.20992 0.98878 1.07478 1.11789 1.21013 0.93204 0.95209 0.95928 1.21693 1.01573 1.03588 1.09944 1.18680 0.88087 0.91514 0.88502 1.19929 0.97338 1.06669 1.26580 0.89567 1.26976 0.95978 1.02287 0.94413 1.70273 1.13383 1.32054 1.21626 0.85153 0.79340 0.76830 0.78060 1.19104 1.19287 1.17782 1.68168 1.06996 1.22186 1.31528 0.89290 0.89329 0.87980 0.91031 0.88140 0.86265 0.92306 0.77141 0.86012 0.85186 0.88002 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 10.76 113.37 1.22 -0.79 16 2 S -0.31 -9.24 20.67 -56.49 -1.17 -10.40 16 3 C -0.08 -1.80 4.23 31.12 0.13 -1.67 16 4 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 5 C -0.11 -2.48 7.56 31.22 0.24 -2.24 16 6 C -0.15 -3.50 7.90 31.22 0.25 -3.26 16 7 C 0.15 4.65 3.94 45.52 0.18 4.83 16 8 H 0.10 2.85 6.15 -2.39 -0.01 2.84 16 9 N -0.71 -29.67 4.90 -321.94 -1.58 -31.25 16 10 C 0.40 20.19 7.65 133.42 1.02 21.21 16 11 C -0.37 -16.83 9.30 22.73 0.21 -16.61 16 12 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 13 C -0.34 -18.18 9.83 22.87 0.22 -17.96 16 14 C 0.26 15.33 6.54 40.17 0.26 15.59 16 15 C -0.47 -27.22 9.13 23.46 0.21 -27.01 16 16 H 0.09 4.66 7.86 -2.91 -0.02 4.63 16 17 C 0.03 1.35 5.49 85.29 0.47 1.82 16 18 N -0.75 -42.58 11.49 21.84 0.25 -42.33 16 19 Si 0.99 40.22 29.56 68.60 2.03 42.25 16 20 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 21 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 22 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 23 N -0.57 -33.31 7.92 -186.60 -1.48 -34.78 16 24 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.07 1.88 8.10 -2.39 -0.02 1.86 16 28 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 31 H 0.39 17.64 7.80 -92.71 -0.72 16.92 16 32 H 0.12 4.73 6.04 -2.91 -0.02 4.71 16 33 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 34 H 0.10 5.01 8.06 -2.91 -0.02 4.99 16 35 H 0.27 14.16 8.29 -92.71 -0.77 13.39 16 Total: -1.00 -69.30 305.68 3.07 -66.23 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: 0.37 Total: 37.50 kcal Atomic # 6 Polarization: -31.85 SS G_CDS: 4.64 Total: -27.21 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -2.80 Total: -108.37 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Atomic # 16 Polarization: -9.24 SS G_CDS: -1.17 Total: -10.40 kcal Total: -69.30 3.07 -66.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309927327.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.788 kcal (2) G-P(sol) polarization free energy of solvation -69.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds