Wall clock time and date at job start Mon Mar 30 2020 07:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.82609 * 2 1 4 4 C 1.50705 * 109.47015 * 305.89193 * 3 2 1 5 5 C 1.38272 * 119.98068 * 269.72118 * 4 3 2 6 6 C 1.38229 * 120.04603 * 179.72612 * 5 4 3 7 7 C 1.38221 * 120.02348 * 0.54767 * 6 5 4 8 8 C 1.38439 * 119.97534 * 359.73124 * 7 6 5 9 9 F 1.35101 * 120.02490 * 180.02562 * 8 7 6 10 10 C 1.38168 * 119.98814 * 89.99788 * 4 3 2 11 11 C 1.54384 * 109.83485 * 120.88973 * 2 1 3 12 12 C 1.55304 * 102.25492 * 98.24199 * 11 2 1 13 13 C 1.54944 * 100.97800 * 34.11596 * 12 11 2 14 14 H 1.08996 * 110.31114 * 82.48962 * 13 12 11 15 15 C 1.50702 * 110.31104 * 204.65934 * 13 12 11 16 16 H 1.08003 * 119.99649 * 0.02562 * 15 13 12 17 17 C 1.37879 * 120.00303 * 180.02562 * 15 13 12 18 18 N 1.31509 * 119.99892 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 120.00047 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47223 * 59.99898 * 19 17 15 21 21 H 1.48496 * 109.47017 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47040 * 299.99909 * 19 17 15 23 23 O 1.43240 * 109.90569 * 239.06629 * 2 1 3 24 24 H 1.09004 * 109.46859 * 299.11331 * 1 2 3 25 25 H 1.08997 * 109.47431 * 59.11306 * 1 2 3 26 26 H 1.08999 * 109.47565 * 179.11537 * 1 2 3 27 27 H 1.09003 * 109.47063 * 65.88456 * 3 2 1 28 28 H 1.08996 * 109.47674 * 185.88901 * 3 2 1 29 29 H 1.07997 * 119.97664 * 359.97438 * 5 4 3 30 30 H 1.07991 * 119.98931 * 180.27746 * 6 5 4 31 31 H 1.08001 * 120.00929 * 179.74365 * 7 6 5 32 32 H 1.08000 * 120.01716 * 0.02562 * 10 4 3 33 33 H 1.09006 * 110.84230 * 340.05320 * 11 2 1 34 34 H 1.08993 * 111.02705 * 216.51561 * 11 2 1 35 35 H 1.09002 * 111.12488 * 152.05572 * 12 11 2 36 36 H 1.08995 * 111.12730 * 276.17567 * 12 11 2 37 37 H 0.97001 * 119.99830 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0489 1.4393 0.0000 4 6 1.4356 2.1943 -1.1511 5 6 2.0702 2.2162 -2.3794 6 6 1.5060 2.9037 -3.4377 7 6 0.3125 3.5794 -3.2659 8 6 -0.3207 3.5629 -2.0349 9 9 -1.4875 4.2226 -1.8660 10 6 0.2426 2.8691 -0.9770 11 6 2.0538 -0.7456 1.2463 12 6 2.3703 -2.1558 0.6779 13 6 2.8432 -1.7977 -0.7535 14 1 3.8921 -1.5017 -0.7425 15 6 2.6387 -2.9685 -1.6801 16 1 2.2138 -3.8873 -1.3037 17 6 2.9942 -2.8667 -3.0084 18 7 3.5112 -1.7478 -3.4669 19 14 2.7401 -4.3177 -4.1571 20 1 1.2982 -4.6705 -4.1976 21 1 3.1989 -3.9548 -5.5220 22 1 3.5207 -5.4813 -3.6650 23 8 2.0177 -0.6923 -1.1553 24 1 -0.3633 0.5000 0.8979 25 1 -0.3634 0.5275 -0.8819 26 1 -0.3634 -1.0275 -0.0159 27 1 1.7771 1.9235 0.9380 28 1 3.1337 1.4345 -0.1054 29 1 3.0051 1.6925 -2.5132 30 1 2.0001 2.9164 -4.3978 31 1 -0.1259 4.1198 -4.0918 32 1 -0.2504 2.8559 -0.0161 33 1 1.2846 -0.8014 2.0166 34 1 2.9556 -0.2725 1.6347 35 1 3.1661 -2.6385 1.2453 36 1 1.4762 -2.7787 0.6520 37 1 3.7609 -1.6761 -4.4014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310087873.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:32 Heat of formation + Delta-G solvation = -79.847935 kcal Electronic energy + Delta-G solvation = -20348.149035 eV Core-core repulsion = 17197.259973 eV Total energy + Delta-G solvation = -3150.889062 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.62976 -39.37922 -37.98989 -33.63810 -32.17546 -31.00997 -30.17022 -29.74196 -26.67472 -26.29019 -23.27916 -22.32701 -21.36238 -20.28711 -19.02255 -16.84878 -16.50565 -16.00318 -15.77702 -15.47027 -15.20838 -14.71548 -14.32876 -13.82331 -13.35124 -13.13306 -13.02897 -12.62548 -12.38491 -11.96419 -11.77584 -11.56821 -11.48798 -11.38662 -10.94683 -10.90897 -10.79265 -10.61236 -10.37431 -10.17471 -9.88520 -9.72044 -9.06902 -8.65160 -8.51319 -8.25554 -7.83905 -6.01219 -4.12689 1.56072 1.57498 3.31859 3.36529 3.39218 3.97385 4.42479 4.52012 4.83916 5.08378 5.11237 5.30855 5.44192 5.45750 5.55075 5.66571 5.68765 5.74597 5.87469 5.97129 6.06435 6.15096 6.22098 6.36025 6.40351 6.43411 6.49897 6.62033 6.65960 6.75339 6.76811 6.79106 6.93996 7.04816 7.30127 7.58924 7.89183 8.27695 8.66804 9.04348 9.57829 11.06210 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019527 B = 0.006642 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.532003 B = 4214.696276 C = 5081.369889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.104 3.896 3 C -0.085 4.085 4 C -0.032 4.032 5 C -0.094 4.094 6 C -0.092 4.092 7 C -0.166 4.166 8 C 0.083 3.917 9 F -0.150 7.150 10 C -0.155 4.155 11 C -0.147 4.147 12 C -0.147 4.147 13 C 0.211 3.789 14 H 0.028 0.972 15 C -0.533 4.533 16 H 0.060 0.940 17 C 0.080 3.920 18 N -0.862 5.862 19 Si 0.889 3.111 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 O -0.343 6.343 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.138 0.862 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.459 8.925 5.175 10.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.062 3.938 3 C -0.122 4.122 4 C -0.032 4.032 5 C -0.112 4.112 6 C -0.110 4.110 7 C -0.185 4.185 8 C 0.064 3.936 9 F -0.128 7.128 10 C -0.174 4.174 11 C -0.185 4.185 12 C -0.185 4.185 13 C 0.156 3.844 14 H 0.045 0.955 15 C -0.570 4.570 16 H 0.078 0.922 17 C -0.126 4.126 18 N -0.499 5.499 19 Si 0.716 3.284 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 O -0.263 6.263 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.156 0.844 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.470 9.101 4.811 10.864 hybrid contribution -0.432 -0.731 -0.501 0.986 sum -3.902 8.370 4.310 10.191 Atomic orbital electron populations 1.22117 0.95800 1.01946 1.00786 1.21769 0.93260 0.90408 0.88318 1.21076 1.00810 0.95404 0.94936 1.19633 0.93277 0.94355 0.95929 1.21298 1.01297 0.96812 0.91792 1.21004 0.94587 0.96117 0.99260 1.21015 0.97589 1.03862 0.96048 1.17622 0.83529 0.97145 0.95280 1.91445 1.46041 1.79129 1.96218 1.20952 0.97457 1.00450 0.98561 1.23140 1.00402 0.97559 0.97370 1.23311 1.00852 0.95012 0.99310 1.20510 0.90481 0.84927 0.88515 0.95470 1.21059 1.43899 0.97426 0.94611 0.92211 1.25022 0.93872 0.95467 0.98192 1.69995 1.40064 1.24961 1.14835 0.86737 0.78716 0.82966 0.79983 1.20185 1.21211 1.20178 1.88879 1.67382 1.44201 1.25803 0.93369 0.92201 0.92458 0.91217 0.90373 0.84403 0.85414 0.85606 0.85468 0.91832 0.91720 0.92139 0.91754 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 7.98 37.16 0.30 -2.32 16 2 C 0.10 1.94 0.94 -89.90 -0.08 1.86 16 3 C -0.08 -1.38 4.56 -27.88 -0.13 -1.51 16 4 C -0.03 -0.53 4.25 -104.63 -0.44 -0.98 16 5 C -0.09 -1.65 9.49 -39.57 -0.38 -2.03 16 6 C -0.09 -1.43 10.04 -39.59 -0.40 -1.83 16 7 C -0.17 -2.48 10.03 -39.51 -0.40 -2.87 16 8 C 0.08 1.30 7.30 -39.42 -0.29 1.02 16 9 F -0.15 -2.31 17.27 2.25 0.04 -2.27 16 10 C -0.16 -2.41 7.83 -39.52 -0.31 -2.72 16 11 C -0.15 -2.51 6.08 -24.78 -0.15 -2.66 16 12 C -0.15 -2.96 6.53 -24.48 -0.16 -3.12 16 13 C 0.21 5.25 3.22 -26.86 -0.09 5.16 16 14 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 15 C -0.53 -14.67 8.80 -34.44 -0.30 -14.97 16 16 H 0.06 1.61 7.76 -52.48 -0.41 1.21 16 17 C 0.08 2.23 5.43 -17.82 -0.10 2.13 16 18 N -0.86 -24.68 13.05 55.43 0.72 -23.95 16 19 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 O -0.34 -8.34 9.67 -35.23 -0.34 -8.68 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 1.11 6.12 -51.93 -0.32 0.79 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 28 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 29 H 0.14 2.64 8.06 -52.49 -0.42 2.22 16 30 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.13 1.75 8.05 -52.49 -0.42 1.33 16 33 H 0.06 0.94 7.82 -51.93 -0.41 0.54 16 34 H 0.06 1.01 7.86 -51.93 -0.41 0.60 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.31 8.04 -51.93 -0.42 0.89 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 310.18 15.07 4.67 4.67 Total: -1.00 -29.20 310.18 -8.16 -37.36 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.31 Total: 1.50 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -2.92 Total: -24.84 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.72 Total: -23.95 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.34 Total: -8.68 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.20 -8.16 -37.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310087873.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.488 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds