Wall clock time and date at job start Mon Mar 30 2020 07:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.82609 * 2 1 4 4 C 1.50705 * 109.47015 * 305.89193 * 3 2 1 5 5 C 1.38272 * 119.98068 * 269.72118 * 4 3 2 6 6 C 1.38229 * 120.04603 * 179.72612 * 5 4 3 7 7 C 1.38221 * 120.02348 * 0.54767 * 6 5 4 8 8 C 1.38439 * 119.97534 * 359.73124 * 7 6 5 9 9 F 1.35101 * 120.02490 * 180.02562 * 8 7 6 10 10 C 1.38168 * 119.98814 * 89.99788 * 4 3 2 11 11 C 1.54384 * 109.83485 * 120.88973 * 2 1 3 12 12 C 1.55304 * 102.25492 * 98.24199 * 11 2 1 13 13 C 1.54944 * 100.97800 * 34.11596 * 12 11 2 14 14 H 1.08996 * 110.31114 * 82.48962 * 13 12 11 15 15 C 1.50702 * 110.31104 * 204.65934 * 13 12 11 16 16 H 1.08003 * 119.99649 * 0.02562 * 15 13 12 17 17 C 1.37879 * 120.00303 * 180.02562 * 15 13 12 18 18 N 1.31509 * 119.99892 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 120.00047 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47223 * 59.99898 * 19 17 15 21 21 H 1.48496 * 109.47017 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47040 * 299.99909 * 19 17 15 23 23 O 1.43240 * 109.90569 * 239.06629 * 2 1 3 24 24 H 1.09004 * 109.46859 * 299.11331 * 1 2 3 25 25 H 1.08997 * 109.47431 * 59.11306 * 1 2 3 26 26 H 1.08999 * 109.47565 * 179.11537 * 1 2 3 27 27 H 1.09003 * 109.47063 * 65.88456 * 3 2 1 28 28 H 1.08996 * 109.47674 * 185.88901 * 3 2 1 29 29 H 1.07997 * 119.97664 * 359.97438 * 5 4 3 30 30 H 1.07991 * 119.98931 * 180.27746 * 6 5 4 31 31 H 1.08001 * 120.00929 * 179.74365 * 7 6 5 32 32 H 1.08000 * 120.01716 * 0.02562 * 10 4 3 33 33 H 1.09006 * 110.84230 * 340.05320 * 11 2 1 34 34 H 1.08993 * 111.02705 * 216.51561 * 11 2 1 35 35 H 1.09002 * 111.12488 * 152.05572 * 12 11 2 36 36 H 1.08995 * 111.12730 * 276.17567 * 12 11 2 37 37 H 0.97001 * 119.99830 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0489 1.4393 0.0000 4 6 1.4356 2.1943 -1.1511 5 6 2.0702 2.2162 -2.3794 6 6 1.5060 2.9037 -3.4377 7 6 0.3125 3.5794 -3.2659 8 6 -0.3207 3.5629 -2.0349 9 9 -1.4875 4.2226 -1.8660 10 6 0.2426 2.8691 -0.9770 11 6 2.0538 -0.7456 1.2463 12 6 2.3703 -2.1558 0.6779 13 6 2.8432 -1.7977 -0.7535 14 1 3.8921 -1.5017 -0.7425 15 6 2.6387 -2.9685 -1.6801 16 1 2.2138 -3.8873 -1.3037 17 6 2.9942 -2.8667 -3.0084 18 7 3.5112 -1.7478 -3.4669 19 14 2.7401 -4.3177 -4.1571 20 1 1.2982 -4.6705 -4.1976 21 1 3.1989 -3.9548 -5.5220 22 1 3.5207 -5.4813 -3.6650 23 8 2.0177 -0.6923 -1.1553 24 1 -0.3633 0.5000 0.8979 25 1 -0.3634 0.5275 -0.8819 26 1 -0.3634 -1.0275 -0.0159 27 1 1.7771 1.9235 0.9380 28 1 3.1337 1.4345 -0.1054 29 1 3.0051 1.6925 -2.5132 30 1 2.0001 2.9164 -4.3978 31 1 -0.1259 4.1198 -4.0918 32 1 -0.2504 2.8559 -0.0161 33 1 1.2846 -0.8014 2.0166 34 1 2.9556 -0.2725 1.6347 35 1 3.1661 -2.6385 1.2453 36 1 1.4762 -2.7787 0.6520 37 1 3.7609 -1.6761 -4.4014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310087873.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:31 Heat of formation + Delta-G solvation = -94.801732 kcal Electronic energy + Delta-G solvation = -20348.797480 eV Core-core repulsion = 17197.259973 eV Total energy + Delta-G solvation = -3151.537507 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.84243 -40.79723 -39.43210 -35.31095 -33.98708 -32.61159 -31.44259 -31.23176 -28.30282 -27.80315 -24.97304 -23.57550 -22.77846 -21.93807 -20.49056 -18.56868 -18.06461 -17.27589 -17.05545 -16.95020 -16.59603 -16.52113 -15.93165 -15.21147 -14.81964 -14.49725 -14.36126 -14.27456 -13.88253 -13.58165 -13.39356 -12.93626 -12.89025 -12.77861 -12.70994 -12.41445 -12.31669 -12.08302 -12.02918 -12.01201 -11.38418 -11.22081 -10.89726 -10.65620 -9.95612 -9.66300 -9.41673 -8.10775 -6.29328 0.29942 0.34117 1.40162 1.42297 1.49212 2.42130 2.70870 3.07528 3.29954 3.57518 3.85883 3.90996 3.99331 4.09715 4.22187 4.26955 4.39278 4.45983 4.54548 4.57832 4.73185 4.77213 4.91673 4.93762 5.01575 5.05215 5.15015 5.17247 5.19462 5.26658 5.34683 5.47077 5.55061 5.63468 5.76955 5.81513 6.05054 6.25513 6.68817 7.18030 7.45767 8.96111 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019527 B = 0.006642 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.532003 B = 4214.696276 C = 5081.369889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.089 3.911 3 C -0.079 4.079 4 C -0.042 4.042 5 C -0.119 4.119 6 C -0.097 4.097 7 C -0.163 4.163 8 C 0.077 3.923 9 F -0.147 7.147 10 C -0.151 4.151 11 C -0.135 4.135 12 C -0.141 4.141 13 C 0.205 3.795 14 H -0.007 1.007 15 C -0.555 4.555 16 H 0.058 0.942 17 C 0.029 3.971 18 N -0.893 5.893 19 Si 0.951 3.049 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.266 1.266 23 O -0.375 6.375 24 H 0.087 0.913 25 H 0.044 0.956 26 H 0.041 0.959 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.142 0.858 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.896 9.466 6.361 12.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.048 3.952 3 C -0.117 4.117 4 C -0.042 4.042 5 C -0.137 4.137 6 C -0.115 4.115 7 C -0.182 4.182 8 C 0.058 3.942 9 F -0.125 7.125 10 C -0.170 4.170 11 C -0.172 4.172 12 C -0.179 4.179 13 C 0.149 3.851 14 H 0.010 0.990 15 C -0.593 4.593 16 H 0.076 0.924 17 C -0.174 4.174 18 N -0.530 5.530 19 Si 0.776 3.224 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.190 1.190 23 O -0.295 6.295 24 H 0.106 0.894 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.125 0.875 28 H 0.083 0.917 29 H 0.127 0.873 30 H 0.160 0.840 31 H 0.169 0.831 32 H 0.168 0.832 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.909 9.640 6.012 12.376 hybrid contribution -0.002 -0.846 -0.859 1.206 sum -4.911 8.794 5.153 11.314 Atomic orbital electron populations 1.22075 0.94628 1.01308 1.02019 1.22143 0.94196 0.91384 0.87442 1.21036 0.99944 0.94122 0.96556 1.19698 0.93935 0.94935 0.95660 1.21249 1.00990 0.98055 0.93422 1.21176 0.95058 0.95832 0.99391 1.21272 0.96913 1.03235 0.96752 1.17778 0.83650 0.97157 0.95641 1.91455 1.45830 1.79037 1.96220 1.21112 0.96722 0.99543 0.99579 1.23124 1.02077 0.94846 0.97159 1.23184 1.00849 0.97167 0.96715 1.20325 0.89134 0.84669 0.90948 0.98971 1.21481 1.43711 0.98531 0.95554 0.92402 1.25813 0.93738 0.98003 0.99817 1.70131 1.41157 1.26763 1.14986 0.85748 0.78571 0.80073 0.78002 1.20067 1.20830 1.19034 1.88789 1.67308 1.44476 1.28922 0.89432 0.93660 0.93939 0.87520 0.91729 0.87343 0.84003 0.83072 0.83164 0.88526 0.90192 0.90856 0.92207 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 7.98 71.98 0.57 -4.12 16 2 C 0.09 3.21 0.94 -10.33 -0.01 3.20 16 3 C -0.08 -2.48 4.56 29.85 0.14 -2.34 16 4 C -0.04 -1.38 4.25 -19.87 -0.08 -1.47 16 5 C -0.12 -4.30 9.49 22.28 0.21 -4.09 16 6 C -0.10 -3.01 10.04 22.26 0.22 -2.79 16 7 C -0.16 -4.60 10.03 22.31 0.22 -4.38 16 8 C 0.08 2.24 7.30 22.38 0.16 2.41 16 9 F -0.15 -4.16 17.27 44.97 0.78 -3.38 16 10 C -0.15 -4.36 7.83 22.31 0.17 -4.18 16 11 C -0.13 -4.25 6.08 31.86 0.19 -4.06 16 12 C -0.14 -5.59 6.53 32.05 0.21 -5.38 16 13 C 0.20 10.48 3.22 30.51 0.10 10.58 16 14 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 15 C -0.56 -31.36 8.80 25.60 0.23 -31.14 16 16 H 0.06 3.18 7.76 -2.91 -0.02 3.16 16 17 C 0.03 1.64 5.43 84.66 0.46 2.10 16 18 N -0.89 -52.97 13.05 21.45 0.28 -52.69 16 19 Si 0.95 44.27 29.54 68.60 2.03 46.29 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 O -0.37 -18.63 9.67 -148.98 -1.44 -20.07 16 24 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 25 H 0.04 1.60 6.12 -2.39 -0.01 1.59 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.11 2.51 8.09 -2.39 -0.02 2.49 16 28 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 29 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 30 H 0.14 3.86 8.06 -2.92 -0.02 3.84 16 31 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 32 H 0.15 3.57 8.05 -2.91 -0.02 3.54 16 33 H 0.10 2.44 7.82 -2.38 -0.02 2.42 16 34 H 0.08 2.28 7.86 -2.39 -0.02 2.26 16 35 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 37 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -64.82 310.18 5.49 -59.33 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 1.05 Total: 16.17 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 2.80 Total: -45.64 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.28 Total: -52.69 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -1.44 Total: -20.07 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.78 Total: -3.38 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -64.82 5.49 -59.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310087873.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.469 kcal (2) G-P(sol) polarization free energy of solvation -64.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds