Wall clock time and date at job start Mon Mar 30 2020 07:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.86593 * 2 1 4 4 C 1.50702 * 109.47062 * 58.99691 * 3 2 1 5 5 C 1.38270 * 119.98561 * 270.27849 * 4 3 2 6 6 C 1.38224 * 120.05223 * 180.32259 * 5 4 3 7 7 C 1.38220 * 120.02601 * 359.67397 * 6 5 4 8 8 C 1.38447 * 119.97159 * 0.02562 * 7 6 5 9 9 F 1.35096 * 120.02523 * 179.97438 * 8 7 6 10 10 C 1.38172 * 119.98969 * 89.99253 * 4 3 2 11 11 C 1.54102 * 109.88015 * 238.99534 * 2 1 3 12 12 C 1.54804 * 104.18730 * 242.45353 * 11 2 1 13 13 C 1.54996 * 102.09536 * 20.88131 * 12 11 2 14 14 H 1.08992 * 110.61720 * 81.47355 * 13 12 11 15 15 C 1.50700 * 110.62226 * 204.31915 * 13 12 11 16 16 H 1.07997 * 119.99618 * 0.02562 * 15 13 12 17 17 C 1.37872 * 120.00167 * 179.97438 * 15 13 12 18 18 N 1.31511 * 120.00011 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99979 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46959 * 89.99936 * 19 17 15 21 21 H 1.48503 * 109.47024 * 209.99652 * 19 17 15 22 22 H 1.48500 * 109.47089 * 330.00083 * 19 17 15 23 23 O 1.43743 * 110.00487 * 121.08537 * 2 1 3 24 24 H 1.09004 * 109.47654 * 60.70376 * 1 2 3 25 25 H 1.09004 * 109.46876 * 180.69724 * 1 2 3 26 26 H 1.09000 * 109.47666 * 300.69960 * 1 2 3 27 27 H 1.08991 * 109.47268 * 298.99768 * 3 2 1 28 28 H 1.09001 * 109.46606 * 178.98634 * 3 2 1 29 29 H 1.08005 * 119.97405 * 0.02562 * 5 4 3 30 30 H 1.07994 * 119.98833 * 179.69678 * 6 5 4 31 31 H 1.07998 * 120.01498 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.01574 * 359.97438 * 10 4 3 33 33 H 1.09001 * 110.48676 * 1.13193 * 11 2 1 34 34 H 1.09000 * 110.48652 * 123.77533 * 11 2 1 35 35 H 1.08997 * 110.90604 * 139.07979 * 12 11 2 36 36 H 1.09002 * 110.91035 * 262.65171 * 12 11 2 37 37 H 0.97006 * 119.99970 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0499 1.4390 0.0000 4 6 1.5323 2.1601 1.2179 5 6 0.3267 2.8348 1.1611 6 6 -0.1461 3.5023 2.2753 7 6 0.5827 3.4904 3.4497 8 6 1.7869 2.8099 3.5095 9 9 2.5004 2.7980 4.6567 10 6 2.2597 2.1419 2.3924 11 6 2.0540 -0.7465 -1.2421 12 6 2.8357 -1.9493 -0.6602 13 6 2.2334 -2.0703 0.7628 14 1 1.2879 -2.6116 0.7346 15 6 3.2043 -2.7493 1.6941 16 1 4.1674 -3.0728 1.3279 17 6 2.8634 -2.9566 3.0139 18 7 1.6912 -2.5613 3.4601 19 14 4.0666 -3.7989 4.1681 20 1 4.9331 -2.7784 4.8107 21 1 3.3146 -4.5388 5.2132 22 1 4.9087 -4.7492 3.3979 23 8 2.0217 -0.6974 1.1567 24 1 -0.3634 0.5029 -0.8962 25 1 -0.3633 -1.0276 0.0125 26 1 -0.3634 0.5246 0.8836 27 1 1.7049 1.9500 -0.8988 28 1 3.1397 1.4315 0.0182 29 1 -0.2437 2.8443 0.2440 30 1 -1.0855 4.0330 2.2284 31 1 0.2129 4.0116 4.3203 32 1 3.1990 1.6107 2.4381 33 1 1.2237 -1.0928 -1.8576 34 1 2.7175 -0.1044 -1.8214 35 1 2.6477 -2.8527 -1.2403 36 1 3.9033 -1.7339 -0.6142 37 1 1.4516 -2.7068 4.3888 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310087875.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:35 Heat of formation + Delta-G solvation = -79.766675 kcal Electronic energy + Delta-G solvation = -20447.785891 eV Core-core repulsion = 17296.900353 eV Total energy + Delta-G solvation = -3150.885538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.46923 -39.37709 -38.00000 -33.59028 -32.16455 -30.98448 -30.33753 -29.57672 -26.77583 -26.26748 -23.32735 -22.30643 -21.28799 -20.20449 -19.04805 -16.91138 -16.53663 -15.95827 -15.82515 -15.18934 -14.99003 -14.63630 -14.26849 -13.86987 -13.70223 -13.03050 -12.88598 -12.74338 -12.51037 -11.90292 -11.72807 -11.63415 -11.47887 -11.34552 -11.00943 -10.89137 -10.78428 -10.57202 -10.32075 -10.10247 -9.88018 -9.66246 -9.05127 -8.58217 -8.51137 -8.28861 -7.95092 -6.00207 -4.12698 1.51849 1.61364 3.32408 3.39299 3.40900 3.93833 4.43369 4.62506 4.85887 5.02075 5.16447 5.33229 5.42551 5.47038 5.51521 5.60773 5.68672 5.79125 5.83726 5.98013 6.05247 6.16334 6.22608 6.32192 6.42789 6.45574 6.54235 6.59974 6.64734 6.69889 6.78314 6.83410 6.94230 7.01075 7.28616 7.54617 7.90271 8.26602 8.62913 8.99910 9.58015 11.07255 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.008150 C = 0.005963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.648358 B = 3434.663400 C = 4694.194280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.097 3.903 3 C -0.072 4.072 4 C -0.031 4.031 5 C -0.132 4.132 6 C -0.099 4.099 7 C -0.167 4.167 8 C 0.097 3.903 9 F -0.144 7.144 10 C -0.121 4.121 11 C -0.146 4.146 12 C -0.148 4.148 13 C 0.210 3.790 14 H 0.026 0.974 15 C -0.529 4.529 16 H 0.062 0.938 17 C 0.078 3.922 18 N -0.861 5.861 19 Si 0.889 3.111 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 O -0.341 6.341 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 10.657 -6.204 12.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.056 3.944 3 C -0.110 4.110 4 C -0.031 4.031 5 C -0.150 4.150 6 C -0.117 4.117 7 C -0.185 4.185 8 C 0.078 3.922 9 F -0.123 7.123 10 C -0.139 4.139 11 C -0.184 4.184 12 C -0.186 4.186 13 C 0.155 3.845 14 H 0.044 0.956 15 C -0.567 4.567 16 H 0.080 0.920 17 C -0.128 4.128 18 N -0.497 5.497 19 Si 0.716 3.284 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 O -0.260 6.260 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.155 0.845 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.040 10.746 -5.796 12.583 hybrid contribution 0.583 -0.596 0.794 1.151 sum -2.458 10.150 -5.002 11.579 Atomic orbital electron populations 1.22284 0.96473 1.02025 1.00809 1.21806 0.92855 0.91092 0.88625 1.20844 1.01230 0.94582 0.94320 1.19603 0.93766 0.94704 0.95072 1.21041 0.96143 0.98918 0.98882 1.20830 0.99259 0.99320 0.92324 1.20993 0.94839 1.03057 0.99661 1.17730 0.91673 1.00364 0.82455 1.91471 1.77711 1.95098 1.48021 1.21092 1.02398 0.98859 0.91585 1.22989 0.99678 0.98214 0.97508 1.23197 0.99861 0.95942 0.99579 1.20628 0.94738 0.80621 0.88531 0.95596 1.20975 1.02469 1.38135 0.95099 0.91957 1.25060 0.94965 0.94468 0.98261 1.70023 1.19969 1.44246 1.15472 0.86661 0.81334 0.79636 0.80757 1.20457 1.21138 1.19756 1.89298 1.84304 1.23152 1.29286 0.93507 0.92566 0.91993 0.90750 0.90488 0.85913 0.85703 0.85551 0.84464 0.91965 0.92093 0.92424 0.91867 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 8.01 37.16 0.30 -2.49 16 2 C 0.10 1.84 0.85 -90.04 -0.08 1.76 16 3 C -0.07 -1.16 4.45 -27.88 -0.12 -1.28 16 4 C -0.03 -0.52 4.36 -104.63 -0.46 -0.98 16 5 C -0.13 -1.88 7.87 -39.57 -0.31 -2.20 16 6 C -0.10 -1.34 10.04 -39.59 -0.40 -1.74 16 7 C -0.17 -2.50 10.03 -39.51 -0.40 -2.90 16 8 C 0.10 1.73 7.30 -39.41 -0.29 1.44 16 9 F -0.14 -2.70 17.27 2.25 0.04 -2.67 16 10 C -0.12 -2.25 9.33 -39.52 -0.37 -2.62 16 11 C -0.15 -2.52 6.27 -25.21 -0.16 -2.68 16 12 C -0.15 -3.03 6.55 -24.73 -0.16 -3.19 16 13 C 0.21 5.35 3.04 -26.83 -0.08 5.27 16 14 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 15 C -0.53 -14.84 8.82 -34.44 -0.30 -15.15 16 16 H 0.06 1.70 7.77 -52.49 -0.41 1.29 16 17 C 0.08 2.24 5.44 -17.82 -0.10 2.14 16 18 N -0.86 -25.72 13.13 55.43 0.73 -24.99 16 19 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 23 O -0.34 -8.46 9.75 -35.23 -0.34 -8.81 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.06 1.14 6.15 -51.93 -0.32 0.82 16 27 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 28 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 29 H 0.12 1.46 8.03 -52.48 -0.42 1.04 16 30 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.14 2.73 8.06 -52.49 -0.42 2.31 16 33 H 0.06 0.98 7.70 -51.93 -0.40 0.58 16 34 H 0.06 0.91 7.70 -51.93 -0.40 0.51 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.30 8.05 -51.93 -0.42 0.88 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 309.97 15.07 4.67 4.67 Total: -1.00 -30.75 309.97 -8.15 -38.90 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.30 Total: 0.84 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -2.92 Total: -24.60 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.73 Total: -24.99 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.34 Total: -8.81 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.75 -8.15 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310087875.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.864 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds