Wall clock time and date at job start Mon Mar 30 2020 07:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.86593 * 2 1 4 4 C 1.50702 * 109.47062 * 58.99691 * 3 2 1 5 5 C 1.38270 * 119.98561 * 270.27849 * 4 3 2 6 6 C 1.38224 * 120.05223 * 180.32259 * 5 4 3 7 7 C 1.38220 * 120.02601 * 359.67397 * 6 5 4 8 8 C 1.38447 * 119.97159 * 0.02562 * 7 6 5 9 9 F 1.35096 * 120.02523 * 179.97438 * 8 7 6 10 10 C 1.38172 * 119.98969 * 89.99253 * 4 3 2 11 11 C 1.54102 * 109.88015 * 238.99534 * 2 1 3 12 12 C 1.54804 * 104.18730 * 242.45353 * 11 2 1 13 13 C 1.54996 * 102.09536 * 20.88131 * 12 11 2 14 14 H 1.08992 * 110.61720 * 81.47355 * 13 12 11 15 15 C 1.50700 * 110.62226 * 204.31915 * 13 12 11 16 16 H 1.07997 * 119.99618 * 0.02562 * 15 13 12 17 17 C 1.37872 * 120.00167 * 179.97438 * 15 13 12 18 18 N 1.31511 * 120.00011 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99979 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46959 * 89.99936 * 19 17 15 21 21 H 1.48503 * 109.47024 * 209.99652 * 19 17 15 22 22 H 1.48500 * 109.47089 * 330.00083 * 19 17 15 23 23 O 1.43743 * 110.00487 * 121.08537 * 2 1 3 24 24 H 1.09004 * 109.47654 * 60.70376 * 1 2 3 25 25 H 1.09004 * 109.46876 * 180.69724 * 1 2 3 26 26 H 1.09000 * 109.47666 * 300.69960 * 1 2 3 27 27 H 1.08991 * 109.47268 * 298.99768 * 3 2 1 28 28 H 1.09001 * 109.46606 * 178.98634 * 3 2 1 29 29 H 1.08005 * 119.97405 * 0.02562 * 5 4 3 30 30 H 1.07994 * 119.98833 * 179.69678 * 6 5 4 31 31 H 1.07998 * 120.01498 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.01574 * 359.97438 * 10 4 3 33 33 H 1.09001 * 110.48676 * 1.13193 * 11 2 1 34 34 H 1.09000 * 110.48652 * 123.77533 * 11 2 1 35 35 H 1.08997 * 110.90604 * 139.07979 * 12 11 2 36 36 H 1.09002 * 110.91035 * 262.65171 * 12 11 2 37 37 H 0.97006 * 119.99970 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0499 1.4390 0.0000 4 6 1.5323 2.1601 1.2179 5 6 0.3267 2.8348 1.1611 6 6 -0.1461 3.5023 2.2753 7 6 0.5827 3.4904 3.4497 8 6 1.7869 2.8099 3.5095 9 9 2.5004 2.7980 4.6567 10 6 2.2597 2.1419 2.3924 11 6 2.0540 -0.7465 -1.2421 12 6 2.8357 -1.9493 -0.6602 13 6 2.2334 -2.0703 0.7628 14 1 1.2879 -2.6116 0.7346 15 6 3.2043 -2.7493 1.6941 16 1 4.1674 -3.0728 1.3279 17 6 2.8634 -2.9566 3.0139 18 7 1.6912 -2.5613 3.4601 19 14 4.0666 -3.7989 4.1681 20 1 4.9331 -2.7784 4.8107 21 1 3.3146 -4.5388 5.2132 22 1 4.9087 -4.7492 3.3979 23 8 2.0217 -0.6974 1.1567 24 1 -0.3634 0.5029 -0.8962 25 1 -0.3633 -1.0276 0.0125 26 1 -0.3634 0.5246 0.8836 27 1 1.7049 1.9500 -0.8988 28 1 3.1397 1.4315 0.0182 29 1 -0.2437 2.8443 0.2440 30 1 -1.0855 4.0330 2.2284 31 1 0.2129 4.0116 4.3203 32 1 3.1990 1.6107 2.4381 33 1 1.2237 -1.0928 -1.8576 34 1 2.7175 -0.1044 -1.8214 35 1 2.6477 -2.8527 -1.2403 36 1 3.9033 -1.7339 -0.6142 37 1 1.4516 -2.7068 4.3888 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310087875.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:34 Heat of formation + Delta-G solvation = -96.951197 kcal Electronic energy + Delta-G solvation = -20448.531068 eV Core-core repulsion = 17296.900353 eV Total energy + Delta-G solvation = -3151.630715 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.87131 -40.78629 -39.43337 -35.29871 -33.99151 -32.59344 -31.67748 -30.99892 -28.43738 -27.77592 -25.05388 -23.55478 -22.65225 -21.93952 -20.50936 -18.68640 -18.16914 -17.25103 -17.04293 -16.80202 -16.58595 -16.47252 -15.88083 -15.42024 -14.93597 -14.44272 -14.28861 -14.24265 -14.21189 -13.56749 -13.27708 -13.03658 -12.91094 -12.76824 -12.64687 -12.39495 -12.34070 -12.12574 -11.98730 -11.92414 -11.31959 -11.25000 -10.94624 -10.71357 -9.95419 -9.71375 -9.45243 -8.17380 -6.36138 0.28604 0.38934 1.35521 1.37688 1.47316 2.37515 2.71641 3.04667 3.36744 3.59049 3.83838 4.00028 4.02926 4.12345 4.25519 4.25938 4.39277 4.44225 4.51890 4.56601 4.75551 4.82138 4.86785 4.97671 5.03667 5.06458 5.15814 5.19981 5.24328 5.30636 5.35450 5.44612 5.51826 5.61305 5.71877 5.76377 6.07053 6.19968 6.64115 7.04705 7.38960 8.90190 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.008150 C = 0.005963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.648358 B = 3434.663400 C = 4694.194280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 C -0.067 4.067 4 C -0.045 4.045 5 C -0.124 4.124 6 C -0.089 4.089 7 C -0.165 4.165 8 C 0.063 3.937 9 F -0.160 7.160 10 C -0.153 4.153 11 C -0.135 4.135 12 C -0.143 4.143 13 C 0.203 3.797 14 H -0.010 1.010 15 C -0.549 4.549 16 H 0.062 0.938 17 C 0.025 3.975 18 N -0.899 5.899 19 Si 0.953 3.047 20 H -0.281 1.281 21 H -0.280 1.280 22 H -0.258 1.258 23 O -0.376 6.376 24 H 0.092 0.908 25 H 0.030 0.970 26 H 0.048 0.952 27 H 0.119 0.881 28 H 0.066 0.934 29 H 0.159 0.841 30 H 0.169 0.831 31 H 0.150 0.850 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.126 12.172 -8.195 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 C -0.104 4.104 4 C -0.045 4.045 5 C -0.142 4.142 6 C -0.107 4.107 7 C -0.184 4.184 8 C 0.045 3.955 9 F -0.139 7.139 10 C -0.172 4.172 11 C -0.172 4.172 12 C -0.180 4.180 13 C 0.147 3.853 14 H 0.008 0.992 15 C -0.587 4.587 16 H 0.080 0.920 17 C -0.177 4.177 18 N -0.537 5.537 19 Si 0.778 3.222 20 H -0.207 1.207 21 H -0.206 1.206 22 H -0.182 1.182 23 O -0.296 6.296 24 H 0.111 0.889 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.137 0.863 28 H 0.084 0.916 29 H 0.177 0.823 30 H 0.187 0.813 31 H 0.168 0.832 32 H 0.122 0.878 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.176 12.258 -7.805 15.120 hybrid contribution 0.883 -1.018 1.366 1.919 sum -3.293 11.240 -6.439 13.366 Atomic orbital electron populations 1.22235 0.95374 1.00897 1.02422 1.22221 0.93861 0.92352 0.87441 1.20865 1.00709 0.92928 0.95905 1.19793 0.94783 0.95477 0.94425 1.21466 0.94907 0.97237 1.00588 1.21372 1.00153 0.98156 0.91022 1.21359 0.93478 1.02118 1.01450 1.18119 0.93241 1.02198 0.81987 1.91417 1.78337 1.95394 1.48737 1.21063 1.02245 1.00369 0.93509 1.22971 1.00399 0.96812 0.97036 1.23073 0.99742 0.98337 0.96895 1.20437 0.92829 0.80975 0.91016 0.99249 1.21433 1.02858 1.38389 0.95984 0.91977 1.25887 0.96599 0.95244 1.00014 1.70163 1.21905 1.46008 1.15581 0.85650 0.79177 0.78685 0.78715 1.20661 1.20564 1.18230 1.89215 1.85068 1.22646 1.32631 0.88883 0.95051 0.93257 0.86319 0.91564 0.82324 0.81336 0.83212 0.87797 0.89817 0.88999 0.91227 0.92318 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.02 8.01 71.98 0.58 -4.44 16 2 C 0.08 2.97 0.85 -10.42 -0.01 2.96 16 3 C -0.07 -2.00 4.45 29.85 0.13 -1.87 16 4 C -0.04 -1.44 4.36 -19.87 -0.09 -1.53 16 5 C -0.12 -3.11 7.87 22.27 0.18 -2.93 16 6 C -0.09 -2.08 10.04 22.26 0.22 -1.86 16 7 C -0.17 -4.71 10.03 22.32 0.22 -4.49 16 8 C 0.06 2.34 7.30 22.38 0.16 2.50 16 9 F -0.16 -6.35 17.27 44.97 0.78 -5.57 16 10 C -0.15 -5.96 9.33 22.31 0.21 -5.75 16 11 C -0.13 -4.28 6.27 31.58 0.20 -4.08 16 12 C -0.14 -5.78 6.55 31.89 0.21 -5.57 16 13 C 0.20 10.70 3.04 30.53 0.09 10.79 16 14 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 15 C -0.55 -31.87 8.82 25.60 0.23 -31.64 16 16 H 0.06 3.48 7.77 -2.91 -0.02 3.46 16 17 C 0.02 1.45 5.44 84.65 0.46 1.91 16 18 N -0.90 -56.05 13.13 21.45 0.28 -55.77 16 19 Si 0.95 45.81 29.54 68.60 2.03 47.83 16 20 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 23 O -0.38 -19.20 9.75 -148.98 -1.45 -20.65 16 24 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 25 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.05 1.73 6.15 -2.39 -0.01 1.71 16 27 H 0.12 2.47 8.09 -2.39 -0.02 2.45 16 28 H 0.07 2.10 8.08 -2.39 -0.02 2.08 16 29 H 0.16 2.82 8.03 -2.91 -0.02 2.80 16 30 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 32 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 33 H 0.08 2.31 7.70 -2.39 -0.02 2.29 16 34 H 0.09 2.37 7.70 -2.39 -0.02 2.35 16 35 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.06 2.39 8.05 -2.39 -0.02 2.37 16 37 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -71.94 309.97 5.47 -66.47 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 1.05 Total: 13.69 kcal Atomic # 6 Polarization: -48.80 SS G_CDS: 2.79 Total: -46.00 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.28 Total: -55.77 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -1.45 Total: -20.65 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.78 Total: -5.57 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -71.94 5.47 -66.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310087875.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.484 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds