Wall clock time and date at job start Mon Mar 30 2020 07:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.82298 * 2 1 4 4 C 1.50700 * 109.47398 * 59.43014 * 3 2 1 5 5 C 1.38266 * 119.98867 * 269.73027 * 4 3 2 6 6 C 1.38225 * 120.05238 * 179.72909 * 5 4 3 7 7 C 1.38223 * 120.02396 * 0.53859 * 6 5 4 8 8 C 1.38445 * 119.97213 * 359.73381 * 7 6 5 9 9 F 1.35099 * 120.01967 * 180.02562 * 8 7 6 10 10 C 1.38176 * 119.98410 * 90.00054 * 4 3 2 11 11 C 1.54379 * 109.82885 * 239.01629 * 2 1 3 12 12 C 1.55303 * 102.25177 * 261.84139 * 11 2 1 13 13 C 1.54943 * 100.94855 * 325.87043 * 12 11 2 14 14 H 1.09001 * 110.39025 * 277.48702 * 13 12 11 15 15 C 1.50695 * 110.31068 * 155.35767 * 13 12 11 16 16 H 1.07995 * 120.00496 * 2.83585 * 15 13 12 17 17 C 1.37880 * 119.99572 * 182.83518 * 15 13 12 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 O 1.43240 * 109.82749 * 120.88638 * 2 1 3 24 24 H 1.09004 * 109.47198 * 300.56895 * 1 2 3 25 25 H 1.09000 * 109.47523 * 60.56784 * 1 2 3 26 26 H 1.09007 * 109.47286 * 180.57195 * 1 2 3 27 27 H 1.09001 * 109.47149 * 179.43025 * 3 2 1 28 28 H 1.09001 * 109.47169 * 299.43026 * 3 2 1 29 29 H 1.08001 * 119.97136 * 359.97113 * 5 4 3 30 30 H 1.07996 * 119.98836 * 180.27025 * 6 5 4 31 31 H 1.07993 * 120.01475 * 179.71176 * 7 6 5 32 32 H 1.07996 * 120.01706 * 359.97438 * 10 4 3 33 33 H 1.08991 * 110.85127 * 20.03442 * 11 2 1 34 34 H 1.09003 * 110.84490 * 143.45492 * 11 2 1 35 35 H 1.09003 * 111.12863 * 207.94671 * 12 11 2 36 36 H 1.09004 * 111.12539 * 83.79143 * 12 11 2 37 37 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4393 0.0000 4 6 1.5394 2.1570 1.2233 5 6 0.3385 2.8404 1.1736 6 6 -0.1327 3.4945 2.2965 7 6 0.6018 3.4753 3.4673 8 6 1.8071 2.7960 3.5166 9 9 2.5255 2.7761 4.6605 10 6 2.2754 2.1364 2.3926 11 6 2.0537 -0.7476 -1.2450 12 6 2.3681 -2.1575 -0.6748 13 6 2.8407 -1.7976 0.7562 14 1 3.8900 -1.5029 0.7467 15 6 2.6349 -2.9666 1.6846 16 1 2.2525 -3.9006 1.3003 17 6 2.9348 -2.8436 3.0248 18 7 3.3999 -1.7061 3.4929 19 14 2.6804 -4.2928 4.1756 20 1 3.5147 -5.4356 3.7245 21 1 1.2494 -4.6896 4.1631 22 1 3.0753 -3.9059 5.5538 23 8 2.0158 -0.6917 1.1564 24 1 -0.3634 0.5227 0.8849 25 1 -0.3634 0.5050 -0.8950 26 1 -0.3634 -1.0277 0.0103 27 1 3.1388 1.4326 0.0102 28 1 1.6970 1.9524 -0.8950 29 1 -0.2337 2.8600 0.2579 30 1 -1.0730 4.0243 2.2578 31 1 0.2357 3.9902 4.3431 32 1 3.2153 1.6058 2.4300 33 1 1.2851 -0.8034 -2.0158 34 1 2.9551 -0.2725 -1.6321 35 1 3.1636 -2.6419 -1.2411 36 1 1.4730 -2.7791 -0.6482 37 1 3.5324 -0.9536 2.8952 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310087876.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:36 Heat of formation + Delta-G solvation = -85.073881 kcal Electronic energy + Delta-G solvation = -20569.852033 eV Core-core repulsion = 17418.736358 eV Total energy + Delta-G solvation = -3151.115676 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.43498 -39.49095 -38.11743 -33.81552 -32.17195 -31.22428 -30.34798 -29.58355 -26.70757 -25.97381 -23.14155 -22.33687 -21.44810 -20.55057 -19.14494 -16.99936 -16.80317 -15.99888 -15.85964 -15.53334 -15.11740 -14.58090 -13.94375 -13.68527 -13.51020 -13.19602 -13.04976 -12.99729 -12.43593 -12.26767 -11.81834 -11.62026 -11.49639 -11.23142 -11.06855 -10.82024 -10.75299 -10.67928 -10.41682 -10.08061 -9.99093 -9.83281 -8.85621 -8.55891 -8.43995 -8.30448 -7.92343 -6.30487 -4.08626 1.49221 1.58444 3.46041 3.48808 3.67352 3.90799 4.56223 4.61622 4.72933 4.98618 5.13208 5.27405 5.33993 5.39400 5.46360 5.54337 5.61276 5.67077 5.77639 5.87786 5.97895 6.04481 6.18144 6.23348 6.28803 6.40093 6.47915 6.51753 6.52414 6.57018 6.63668 6.66705 6.82372 6.93811 7.26271 7.36459 8.12584 8.35880 8.62709 8.93575 9.73528 11.10990 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.016125 B = 0.008234 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.993851 B = 3399.767669 C = 4635.224844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.105 3.895 3 C -0.086 4.086 4 C -0.032 4.032 5 C -0.134 4.134 6 C -0.099 4.099 7 C -0.168 4.168 8 C 0.101 3.899 9 F -0.141 7.141 10 C -0.121 4.121 11 C -0.147 4.147 12 C -0.138 4.138 13 C 0.192 3.808 14 H 0.017 0.983 15 C -0.610 4.610 16 H 0.053 0.947 17 C 0.033 3.967 18 N -0.887 5.887 19 Si 1.066 2.934 20 H -0.288 1.288 21 H -0.288 1.288 22 H -0.282 1.282 23 O -0.359 6.359 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.269 9.394 -6.770 12.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.064 3.936 3 C -0.123 4.123 4 C -0.033 4.033 5 C -0.152 4.152 6 C -0.117 4.117 7 C -0.187 4.187 8 C 0.082 3.918 9 F -0.119 7.119 10 C -0.140 4.140 11 C -0.185 4.185 12 C -0.176 4.176 13 C 0.137 3.863 14 H 0.035 0.965 15 C -0.647 4.647 16 H 0.071 0.929 17 C -0.175 4.175 18 N -0.521 5.521 19 Si 0.894 3.106 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.207 1.207 23 O -0.279 6.279 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.155 0.845 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.125 8.977 -4.942 11.458 hybrid contribution -0.078 0.336 -1.603 1.640 sum -5.203 9.313 -6.545 12.516 Atomic orbital electron populations 1.22096 0.95465 1.02101 1.00938 1.21781 0.93544 0.90294 0.87931 1.21073 1.01134 0.95621 0.94478 1.19566 0.93845 0.94840 0.95017 1.21022 0.96274 0.99141 0.98780 1.20831 0.99239 0.99372 0.92269 1.21015 0.94812 1.03091 0.99746 1.17730 0.91464 1.00016 0.82575 1.91493 1.77381 1.94976 1.48092 1.21109 1.02349 0.98970 0.91586 1.23151 1.00518 0.97483 0.97361 1.23176 1.00941 0.95013 0.98440 1.20675 0.89838 0.85290 0.90450 0.96527 1.21948 1.50383 0.96682 0.95713 0.92873 1.25786 0.93011 1.01696 0.97055 1.70686 1.39121 1.02891 1.39451 0.83611 0.76369 0.74442 0.76190 1.21472 1.21454 1.20720 1.88820 1.67719 1.44355 1.27007 0.92025 0.93157 0.92397 0.90802 0.90787 0.85967 0.85684 0.85473 0.84514 0.91564 0.91702 0.92104 0.91524 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.16 37.16 0.30 -2.22 16 2 C 0.11 1.96 0.93 -89.90 -0.08 1.87 16 3 C -0.09 -1.37 4.53 -27.88 -0.13 -1.50 16 4 C -0.03 -0.54 4.34 -104.63 -0.45 -1.00 16 5 C -0.13 -1.91 7.91 -39.58 -0.31 -2.22 16 6 C -0.10 -1.33 10.04 -39.59 -0.40 -1.73 16 7 C -0.17 -2.54 10.03 -39.51 -0.40 -2.94 16 8 C 0.10 1.85 7.30 -39.42 -0.29 1.56 16 9 F -0.14 -2.74 17.27 2.25 0.04 -2.71 16 10 C -0.12 -2.31 9.31 -39.51 -0.37 -2.67 16 11 C -0.15 -2.50 6.09 -24.79 -0.15 -2.65 16 12 C -0.14 -2.83 6.53 -24.48 -0.16 -2.99 16 13 C 0.19 4.87 2.82 -26.86 -0.08 4.80 16 14 H 0.02 0.46 8.04 -51.93 -0.42 0.04 16 15 C -0.61 -17.39 8.81 -34.44 -0.30 -17.69 16 16 H 0.05 1.49 7.77 -52.49 -0.41 1.09 16 17 C 0.03 0.97 5.42 -17.82 -0.10 0.87 16 18 N -0.89 -27.29 13.55 55.43 0.75 -26.53 16 19 Si 1.07 25.70 29.90 -169.99 -5.08 20.62 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 O -0.36 -8.77 8.56 -35.23 -0.30 -9.07 16 24 H 0.06 1.09 6.19 -51.93 -0.32 0.77 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 28 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.12 1.43 8.05 -52.49 -0.42 1.01 16 30 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.14 2.84 8.06 -52.49 -0.42 2.41 16 33 H 0.07 0.97 7.82 -51.93 -0.41 0.56 16 34 H 0.06 1.01 7.85 -51.93 -0.41 0.60 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.39 8.05 -51.93 -0.42 0.98 16 37 H 0.28 8.57 6.57 -40.82 -0.27 8.30 16 LS Contribution 307.94 15.07 4.64 4.64 Total: -1.00 -31.59 307.94 -8.11 -39.70 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.24 Total: 1.85 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: -2.91 Total: -28.49 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.75 Total: -26.53 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.30 Total: -9.07 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.59 -8.11 -39.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310087876.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.376 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds