Wall clock time and date at job start Mon Mar 30 2020 07:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.82298 * 2 1 4 4 C 1.50700 * 109.47398 * 59.43014 * 3 2 1 5 5 C 1.38266 * 119.98867 * 269.73027 * 4 3 2 6 6 C 1.38225 * 120.05238 * 179.72909 * 5 4 3 7 7 C 1.38223 * 120.02396 * 0.53859 * 6 5 4 8 8 C 1.38445 * 119.97213 * 359.73381 * 7 6 5 9 9 F 1.35099 * 120.01967 * 180.02562 * 8 7 6 10 10 C 1.38176 * 119.98410 * 90.00054 * 4 3 2 11 11 C 1.54379 * 109.82885 * 239.01629 * 2 1 3 12 12 C 1.55303 * 102.25177 * 261.84139 * 11 2 1 13 13 C 1.54943 * 100.94855 * 325.87043 * 12 11 2 14 14 H 1.09001 * 110.39025 * 277.48702 * 13 12 11 15 15 C 1.50695 * 110.31068 * 155.35767 * 13 12 11 16 16 H 1.07995 * 120.00496 * 2.83585 * 15 13 12 17 17 C 1.37880 * 119.99572 * 182.83518 * 15 13 12 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 O 1.43240 * 109.82749 * 120.88638 * 2 1 3 24 24 H 1.09004 * 109.47198 * 300.56895 * 1 2 3 25 25 H 1.09000 * 109.47523 * 60.56784 * 1 2 3 26 26 H 1.09007 * 109.47286 * 180.57195 * 1 2 3 27 27 H 1.09001 * 109.47149 * 179.43025 * 3 2 1 28 28 H 1.09001 * 109.47169 * 299.43026 * 3 2 1 29 29 H 1.08001 * 119.97136 * 359.97113 * 5 4 3 30 30 H 1.07996 * 119.98836 * 180.27025 * 6 5 4 31 31 H 1.07993 * 120.01475 * 179.71176 * 7 6 5 32 32 H 1.07996 * 120.01706 * 359.97438 * 10 4 3 33 33 H 1.08991 * 110.85127 * 20.03442 * 11 2 1 34 34 H 1.09003 * 110.84490 * 143.45492 * 11 2 1 35 35 H 1.09003 * 111.12863 * 207.94671 * 12 11 2 36 36 H 1.09004 * 111.12539 * 83.79143 * 12 11 2 37 37 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4393 0.0000 4 6 1.5394 2.1570 1.2233 5 6 0.3385 2.8404 1.1736 6 6 -0.1327 3.4945 2.2965 7 6 0.6018 3.4753 3.4673 8 6 1.8071 2.7960 3.5166 9 9 2.5255 2.7761 4.6605 10 6 2.2754 2.1364 2.3926 11 6 2.0537 -0.7476 -1.2450 12 6 2.3681 -2.1575 -0.6748 13 6 2.8407 -1.7976 0.7562 14 1 3.8900 -1.5029 0.7467 15 6 2.6349 -2.9666 1.6846 16 1 2.2525 -3.9006 1.3003 17 6 2.9348 -2.8436 3.0248 18 7 3.3999 -1.7061 3.4929 19 14 2.6804 -4.2928 4.1756 20 1 3.5147 -5.4356 3.7245 21 1 1.2494 -4.6896 4.1631 22 1 3.0753 -3.9059 5.5538 23 8 2.0158 -0.6917 1.1564 24 1 -0.3634 0.5227 0.8849 25 1 -0.3634 0.5050 -0.8950 26 1 -0.3634 -1.0277 0.0103 27 1 3.1388 1.4326 0.0102 28 1 1.6970 1.9524 -0.8950 29 1 -0.2337 2.8600 0.2579 30 1 -1.0730 4.0243 2.2578 31 1 0.2357 3.9902 4.3431 32 1 3.2153 1.6058 2.4300 33 1 1.2851 -0.8034 -2.0158 34 1 2.9551 -0.2725 -1.6321 35 1 3.1636 -2.6419 -1.2411 36 1 1.4730 -2.7791 -0.6482 37 1 3.5324 -0.9536 2.8952 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310087876.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:36 Heat of formation + Delta-G solvation = -103.016971 kcal Electronic energy + Delta-G solvation = -20570.630104 eV Core-core repulsion = 17418.736358 eV Total energy + Delta-G solvation = -3151.893746 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.88600 -40.93203 -39.54221 -35.56465 -33.96900 -32.83781 -31.69104 -31.01205 -28.09649 -27.71384 -24.94612 -23.60718 -22.96336 -22.14937 -20.60999 -19.08838 -18.15942 -17.38240 -17.16373 -17.02219 -16.58936 -16.12926 -15.67389 -15.45993 -15.07203 -14.77957 -14.43220 -14.39016 -13.93478 -13.76050 -13.27058 -12.98397 -12.86496 -12.71107 -12.64134 -12.40135 -12.38272 -12.15574 -12.09894 -11.95256 -11.50071 -11.29908 -10.74849 -10.62890 -10.03097 -9.76187 -9.47069 -8.60927 -6.39498 0.24465 0.34282 1.48345 1.57303 1.76074 2.55732 2.67213 3.05439 3.33868 3.45268 3.75890 3.86397 3.93911 4.01394 4.15053 4.18448 4.31491 4.36242 4.40501 4.50907 4.60132 4.75884 4.79411 4.85533 4.88668 4.99116 5.06332 5.11117 5.17012 5.25431 5.26308 5.40038 5.45426 5.49240 5.67197 6.00575 6.03069 6.13295 6.58941 6.86268 7.53693 8.79998 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.016125 B = 0.008234 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.993851 B = 3399.767669 C = 4635.224844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.087 3.913 3 C -0.080 4.080 4 C -0.045 4.045 5 C -0.123 4.123 6 C -0.087 4.087 7 C -0.165 4.165 8 C 0.065 3.935 9 F -0.160 7.160 10 C -0.154 4.154 11 C -0.134 4.134 12 C -0.133 4.133 13 C 0.185 3.815 14 H -0.018 1.018 15 C -0.626 4.626 16 H 0.052 0.948 17 C -0.021 4.021 18 N -0.919 5.919 19 Si 1.111 2.889 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.287 1.287 23 O -0.390 6.390 24 H 0.050 0.950 25 H 0.097 0.903 26 H 0.039 0.961 27 H 0.055 0.945 28 H 0.119 0.881 29 H 0.162 0.838 30 H 0.172 0.828 31 H 0.152 0.848 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.208 10.311 -8.990 15.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.048 3.952 3 C -0.117 4.117 4 C -0.045 4.045 5 C -0.141 4.141 6 C -0.104 4.104 7 C -0.183 4.183 8 C 0.046 3.954 9 F -0.139 7.139 10 C -0.173 4.173 11 C -0.171 4.171 12 C -0.171 4.171 13 C 0.129 3.871 14 H -0.001 1.001 15 C -0.663 4.663 16 H 0.070 0.930 17 C -0.222 4.222 18 N -0.554 5.554 19 Si 0.933 3.067 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.213 1.213 23 O -0.311 6.311 24 H 0.069 0.931 25 H 0.116 0.884 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.137 0.863 29 H 0.180 0.820 30 H 0.190 0.810 31 H 0.169 0.831 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.066 9.895 -7.194 14.653 hybrid contribution 0.803 0.112 -0.981 1.273 sum -7.263 10.007 -8.175 14.823 Atomic orbital electron populations 1.22070 0.93684 1.01490 1.02729 1.22242 0.94958 0.91279 0.86761 1.21064 1.00230 0.94371 0.96075 1.19747 0.94900 0.95665 0.94175 1.21464 0.94839 0.97184 1.00600 1.21400 1.00149 0.98048 0.90826 1.21382 0.93249 1.02000 1.01681 1.18156 0.93188 1.02101 0.81977 1.91429 1.78148 1.95332 1.48999 1.21022 1.01975 1.00578 0.93745 1.23139 1.02301 0.94377 0.97282 1.23059 1.00838 0.97501 0.95669 1.20496 0.88576 0.85041 0.92946 1.00069 1.22390 1.49513 0.97963 0.96480 0.93016 1.27263 0.92277 1.03277 0.99429 1.70803 1.41777 1.03494 1.39371 0.83043 0.77463 0.72210 0.73997 1.18974 1.19816 1.21266 1.88730 1.67549 1.44497 1.30305 0.93071 0.88415 0.94213 0.92587 0.86276 0.82026 0.81020 0.83065 0.88665 0.87806 0.90290 0.90972 0.92019 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 8.16 71.98 0.59 -3.78 16 2 C 0.09 3.12 0.93 -10.33 -0.01 3.11 16 3 C -0.08 -2.44 4.53 29.85 0.14 -2.30 16 4 C -0.04 -1.46 4.34 -19.87 -0.09 -1.55 16 5 C -0.12 -3.02 7.91 22.27 0.18 -2.84 16 6 C -0.09 -1.97 10.04 22.26 0.22 -1.75 16 7 C -0.16 -4.72 10.03 22.32 0.22 -4.50 16 8 C 0.06 2.47 7.30 22.38 0.16 2.64 16 9 F -0.16 -6.74 17.27 44.97 0.78 -5.96 16 10 C -0.15 -6.25 9.31 22.31 0.21 -6.04 16 11 C -0.13 -4.17 6.09 31.85 0.19 -3.98 16 12 C -0.13 -5.37 6.53 32.05 0.21 -5.16 16 13 C 0.18 9.75 2.82 30.51 0.09 9.84 16 14 H -0.02 -1.05 8.04 -2.39 -0.02 -1.07 16 15 C -0.63 -36.91 8.81 25.60 0.23 -36.68 16 16 H 0.05 2.97 7.77 -2.91 -0.02 2.94 16 17 C -0.02 -1.25 5.42 84.66 0.46 -0.79 16 18 N -0.92 -59.79 13.55 21.45 0.29 -59.50 16 19 Si 1.11 52.83 29.90 68.60 2.05 54.88 16 20 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 23 O -0.39 -19.74 8.56 -148.98 -1.28 -21.02 16 24 H 0.05 1.66 6.19 -2.38 -0.01 1.65 16 25 H 0.10 2.05 8.14 -2.39 -0.02 2.04 16 26 H 0.04 1.34 8.14 -2.38 -0.02 1.33 16 27 H 0.06 1.87 8.08 -2.39 -0.02 1.85 16 28 H 0.12 2.52 8.08 -2.39 -0.02 2.50 16 29 H 0.16 2.71 8.05 -2.91 -0.02 2.69 16 30 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.10 2.50 7.82 -2.39 -0.02 2.48 16 34 H 0.08 2.25 7.85 -2.39 -0.02 2.23 16 35 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.06 2.53 8.05 -2.38 -0.02 2.51 16 37 H 0.26 17.61 6.57 -92.70 -0.61 17.00 16 Total: -1.00 -75.42 307.94 5.85 -69.57 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 1.21 Total: 15.82 kcal Atomic # 6 Polarization: -56.59 SS G_CDS: 2.79 Total: -53.79 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.29 Total: -59.50 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -1.28 Total: -21.02 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 0.78 Total: -5.96 kcal Atomic # 14 Polarization: 52.83 SS G_CDS: 2.05 Total: 54.88 kcal Total: -75.42 5.85 -69.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310087876.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.447 kcal (2) G-P(sol) polarization free energy of solvation -75.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds